Software Packages in "sid", Subsection science

3depict (0.0.18-2+b3 [ppc64], 0.0.18-2+b2 [alpha, amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el, s390x], 0.0.18-2+b1 [sparc64], 0.0.18-2 [hppa, mips64el, x32], 0.0.13-1 [sh4])
visualisation and analysis for single valued point data
abacas (1.3.1-3)
Algorithm Based Automatic Contiguation of Assembled Sequences
abinit (7.8.2-3+b1 [ppc64], 7.8.2-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 7.8.2-2 [mips])
package for electronic structure calculations
abyss (1.9.0-1+b1) [non-free]
de novo, parallel, sequence assembler for short reads
acedb-other (4.9.39+dfsg.01-6+b1 [ppc64], 4.9.39+dfsg.01-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.01-6+b1 [ppc64], 4.9.39+dfsg.01-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
multiple sequence alignment editor
acedb-other-dotter (4.9.39+dfsg.01-6+b1 [ppc64], 4.9.39+dfsg.01-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
visualisation of sequence similarity
aces3 (3.0.8-5+b2 [ppc64, s390x], 3.0.8-5+b1 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sparc64, x32], 3.0.8-5 [alpha, kfreebsd-amd64, m68k, powerpcspe, sh4])
Advanced Concepts in Electronic Structure III
aces3-data (3.0.8-5)
Advanced Concepts in Electronic Structure III
achilles (2-8.2)
An artificial life and evolution simulator
adun-core (0.81-8+b1 [ppc64], 0.81-8 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32], 0.81-7 [hurd-i386])
Molecular Simulator
aegean (0.15.2+dfsg-1+b1 [ppc64], 0.15.2+dfsg-1 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mipsel, powerpc, ppc64el, s390x, x32], 0.15.1+dfsg-1 [hppa], 0.14.1+dfsg2-2 [m68k], 0.14.1+dfsg-1 [alpha])
integrated genome analysis toolkit
aeskulap (0.2.2b1-15+b3 [ppc64], 0.2.2b1-15+b2 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32], 0.2.2b1-15+b1 [alpha, kfreebsd-i386], 0.2.2b1-13 [m68k, sh4, sparc64])
medical image viewer and DICOM network client
aevol (4.4-1+b3 [amd64], 4.4-1+b2 [arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, ppc64el, s390x, sh4, sparc64, x32], 4.4-1 [alpha, mips64el, powerpcspe])
digital genetics model to run Evolution Experiments in silico
aghermann (1.0.9-1 [amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 1.0.7-1+b1 [m68k], 1.0.6-1 [mips64el], 1.0.5-1 [alpha, hurd-i386], 1.0.2-1 [sh4])
Sleep-research experiment manager
algotutor (0.8.6-1)
program for observing the intermediate steps of algorithm
alien-hunter (1.7-3)
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.3.1-4+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 1.3.1-4 [sh4, sparc64], 1.0.1-3 [m68k])
program to perform phylogeny-based association and localization analysis
altree-examples (1.3.1-4)
example files for ALTree
amap-align (2.2-5+b1 [ppc64], 2.2-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Protein multiple alignment by sequence annealing
ampliconnoise (1.29-5+b2 [ppc64], 1.29-5+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sparc64], 1.29-5 [powerpcspe, s390x, sh4, x32])
removal of noise from 454 sequenced PCR amplicons
andi (0.10-2)
Efficient Estimation of Evolutionary Distances
anfo (0.98-4+b3 [ppc64], 0.98-4+b2 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, x32], 0.98-4+b1 [arm64, hppa, m68k, ppc64el, sh4, sparc64], 0.98-4 [mips64el, powerpcspe])
Short Read Aligner/Mapper from MPG
ants (2.1.0-4.2 [amd64, i386], 1.9.2+svn680.dfsg-4 [alpha, ppc64, x32], 1.9+svn532-5 [hppa])
advanced normalization tools for brain and image analysis
apbs (1.4-1+b1 [ppc64], 1.4-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Adaptive Poisson Boltzmann Solver
apertium-af-nl (0.2.0~r57554-1)
Apertium translation data for the Afrikaans-Dutch pair
apertium-apy (0.1.0~r61425-1+b1 [ppc64], 0.1.0~r61425-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Apertium APY service
apertium-br-fr (0.5.0~r61325-1)
Apertium linguistic data to translate between Breton and French
apertium-cat (1.0.0~r65787-1)
Apertium single language data for Catalan
apertium-cy-en (0.1.1~r57554-2)
Apertium translation data for the Welsh-English pair
apertium-dan (0.4.0~r66063-1)
Apertium single language data for Danish
apertium-dan-nor (1.2.2~r65301-1)
Apertium translation data for the Danish-Norwegian pair
apertium-dev (3.4.0~r61013-5+b1 [mips, ppc64], 3.4.0~r61013-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Development tools and library for Apertium
apertium-fra (1.0.0~r65786-1)
Apertium single language data for French
apertium-fra-cat (1.1.0~r64309-1)
Apertium translation data for the French-Catalan pair
apertium-lex-tools (0.1.1~r60994-1+b2 [ppc64], 0.1.1~r60994-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 0.1.1~r60994-1 [m68k, mips64el, powerpcspe])
Constraint-based lexical selection module
apertium-nno (0.6.0~r66076-1)
Apertium single language data for Norwegian Nynorsk
apertium-nno-nob (1.1.0~r66076-1)
Apertium translation data for the Norwegian Nynorsk-Norwegian Bokmål pair
apertium-nob (0.6.0~r66076-1)
Apertium single language data for Norwegian Bokmål
apertium-swe (0.5.0~r66062-1)
Apertium single language data for Swedish
apertium-swe-dan (0.7.0~r66063-1)
Apertium translation data for the Swedish-Danish pair
aragorn (1.2.36-6+b1 [ppc64], 1.2.36-6 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
tRNA and tmRNA detection in nucleotide sequences
arb (6.0.3-1) [non-free]
phylogenetic sequence analysis suite - main program
arb-common (6.0.3-1) [non-free]
phylogenetic sequence analysis suite - common files
arden (1.0-1+b1 [alpha, ppc64], 1.0-1 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sparc64])
specificity control for read alignments using an artificial reference
artemis (16.0.0+dfsg-5)
genome browser and annotation tool
artfastqgenerator (0.0.20150519-1)
ouputs artificial FASTQ files derived from a reference genome
artfastqgenerator-examples (0.0.20150519-1)
ouputs artificial FASTQ files derived from a reference genome (examples)
asdftool (1.1.0-1)
Command line tool to manipulate ASDF scientific data files
ask (1.0.1-2)
Adaptive Sampling Kit for big experimental spaces
astro-tasks (0.3)
Debian Astronomy Pure Blend (tasksel tasks)
astromatic (1.1)
Astronomical pipeline software collection
astrometry-data-2mass (1.1) [contrib]
Astrometry.net 2MASS index files downloader
astrometry-data-2mass-00 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (2'-2.8')
astrometry-data-2mass-01 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (2.8'-4')
astrometry-data-2mass-02 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (4'-5.6')
astrometry-data-2mass-03 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (5.6'-8')
astrometry-data-2mass-04 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (8'-11')
astrometry-data-2mass-05 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (11'-16')
astrometry-data-2mass-06 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (16'-22')
astrometry-data-2mass-07 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (22'-30')
astrometry-data-2mass-08-19 (1.1) [contrib]
Astrometry.net 2MASS index files downloader (30'-2000')
astrometry-data-tycho2 (2-3)
Astrometry.net Tycho-2 index files
astrometry-data-tycho2-07 (2-3+b1 [ppc64], 2-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32])
Astrometry.net Tycho-2 index files (22'-30')
astrometry-data-tycho2-07-bigendian (2-3)
Astrometry.net Tycho-2 big endian index files (22'-30')
astrometry-data-tycho2-07-littleendian (2-3)
Astrometry.net Tycho-2 little endian index files (22'-30')
astrometry-data-tycho2-08 (2-3+b1 [ppc64], 2-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32])
Astrometry.net Tycho-2 index files (30'-44')
astrometry-data-tycho2-08-bigendian (2-3)
Astrometry.net Tycho-2 big endian index files (30'-44')
astrometry-data-tycho2-08-littleendian (2-3)
Astrometry.net Tycho-2 little endian index files (30'-44')
astrometry-data-tycho2-09 (2-3+b1 [ppc64], 2-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32])
Astrometry.net Tycho-2 index files (44'-60')
astrometry-data-tycho2-09-bigendian (2-3)
Astrometry.net Tycho-2 big endian index files (44'-60')
astrometry-data-tycho2-09-littleendian (2-3)
Astrometry.net Tycho-2 little endian index files (44'-60')
astrometry-data-tycho2-10-19 (2-3+b1 [ppc64], 2-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32])
Astrometry.net Tycho-2 index files (60'-2000')
astrometry-data-tycho2-10-19-bigendian (2-3)
Astrometry.net Tycho-2 big endian index files (60'-2000')
astrometry-data-tycho2-10-19-littleendian (2-3)
Astrometry.net Tycho-2 little endian index files (60'-2000')
astrometry.net (0.67+dfsg-1+b3 [ppc64], 0.67+dfsg-1+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 0.67+dfsg-1 [powerpcspe])
Astrometry plate solver
astronomical-almanac (5.6-4+b1 [armhf, hurd-i386, ppc64], 5.6-4 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
astronomical almanac - calculate planet and star positions
augustus (3.2.2+dfsg-1)
gene prediction in eukaryotic genomes
augustus-data (3.2.2+dfsg-1)
data files for AUGUSTUS
autodock (4.2.6-3+b1 [ppc64], 4.2.6-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
analysis of ligand binding to protein structure
autodock-getdata (4.2.6-3)
instructions for getData to collect compounds
autodock-test (4.2.6-3)
test files for AutoDock
autodock-vina (1.1.2-3+b4 [amd64], 1.1.2-3+b3 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x], 1.1.2-3+b2 [alpha, arm64, m68k, ppc64el, sh4, sparc64, x32], 1.1.2-3 [mips64el, powerpcspe], 1.1.1-3 [hppa])
docking of small molecules to proteins
autodocktools (1.5.7~rc1+cvs.20140424-1) [non-free]
GUI to help set up, launch and analyze AutoDock dockings
autogrid (4.2.6-3+b1 [ppc64], 4.2.6-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.6-3)
test files for AutoGrid
avce00 (2.0.0-5)
Conversion of ESRI Arcinfo Vector Coverage in E00 format
avogadro (1.0.3-13+b2 [ppc64], 1.0.3-13+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32], 1.0.3-13 [sh4, sparc64], 1.0.3-10.1 [m68k])
Molecular Graphics and Modelling System
avogadro-data (1.0.3-13)
Molecular Graphics and Modelling System (Data Files)
aweather (0.8.1-1+b2 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, x32], 0.8.1-1+b1 [arm64, hppa, m68k, mips64el, ppc64el, sh4, sparc64])
Advanced Weather Monitoring Program
axe-demultiplexer (0.3.1-4+b1 [mips, ppc64], 0.3.1-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Trie-based DNA sequencing read demultiplexer
bagel (0.0~git20160507-2)
Computational Chemistry Package
bagel-data (0.0~git20160507-2)
Computational Chemistry Package (data files)
ballview (1.4.3~beta1-1 [amd64, mipsel, x32], 1.4.2+20140406-1.1 [arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, ppc64, ppc64el, s390x, sparc64], 1.4.2+20140406-1+b2 [alpha], 1.4.2+20140406-1 [m68k], 1.4.1+20111206-4 [sh4])
free molecular modeling and molecular graphics tool
bamtools (2.4.0+dfsg-6+b1 [ppc64], 2.4.0+dfsg-6 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, x32], 2.4.0+dfsg-3+b1 [sparc64])
toolkit for manipulating BAM (genome alignment) files
barrnap (0.7+dfsg-2)
rapid ribosomal RNA prediction
bart (0.3.00-1+b2 [ppc64], 0.3.00-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 0.3.00-1 [powerpcspe])
tools for computational magnetic resonance imaging
bauble (0.9.7-2.1)
biodiversity collection manager software application
bcftools (1.3.1-1)
genomic variant calling and manipulation of VCF/BCF files
beagle (4.1~160222-8ef+dfsg-1)
Genotype calling, genotype phasing and imputation of ungenotyped markers
beast-mcmc (1.8.2-1) [contrib]
Bayesian MCMC phylogenetic inference
bedtools (2.25.0-1+b1 [hppa, ppc64, sh4, x32], 2.25.0-1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x], 2.19.1-1 [sparc64])
suite of utilities for comparing genomic features
bedtools-test (2.25.0-1)
test data for the bedtools package
berkeley-express (1.5.1-1+b1 [ppc64], 1.5.1-1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Streaming quantification for high-throughput sequencing
bibus (1.5.2-4)
bibliographic database
bio-rainbow (2.0.4-1+b1 [ppc64], 2.0.4-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
clustering and assembling short reads for bioinformatics
biogenesis (0.8-2)
artificial life program that simulates evolution of organisms
biomaj (1.2.3-7)
biological data-bank updater
biomaj-properties (1.2.3-7)
biological data-bank updater - example properties files
biomaj-watcher (1.2.2-2) [contrib]
biological data-bank updater - web interface
bioperl (1.6.924-3)
Perl tools for computational molecular biology
bioperl-run (1.6.9-3)
BioPerl wrappers: scripts
biosig-tools (1.3.0-2.1+b4 [hppa, ppc64], 1.3.0-2.1+b3 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x], 1.3.0-2.1+b2 [alpha, mips64el], 1.3.0-2.1 [sparc64], 1.3.0-2+b1 [x32], 1.3.0-2 [sh4])
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-5+b1 [ppc64], 1.9g+cvs20050121-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
utilities for biological sequence analysis
bist (0.5.2-1.1+b1 [ppc64], 0.5.2-1.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
chemical drawing tool
bkchem (0.13.0-5)
Chemical structures editor
blasr (0~20151014+git8e668be-1 [amd64, arm64, armel, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips64el, mipsel, ppc64el, sh4, x32], 0~20150724+git3ca7fe8-1+b2 [hppa, ppc64], 0~20150724+git3ca7fe8-1 [alpha])
mapping single-molecule sequencing reads
blast2 (1:2.2.26.20120620-10+b2 [ppc64], 1:2.2.26.20120620-10+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 1:2.2.26.20120620-10 [m68k], 1:2.2.26.20120620-8 [sh4, x32])
Basic Local Alignment Search Tool
blimps-utils (3.9-1) [non-free]
blocks database improved searcher
bmt (0.6-1)
software analysis benchmarking toolkit
bodr (10-1)
Blue Obelisk Data Repository
boinc-app-milkyway (0.18d-4+b1 [ppc64], 0.18d-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 0.18d-1.1 [m68k])
Milkyway@home application for the BOINC client
boinc-app-seti (8.00~svn3363-2+b1 [ppc64], 8.00~svn3363-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 6.97~svn1409-1 [m68k])
SETI@home application for the BOINC client
boinc-app-seti-graphics (8.00~svn3363-2+b1 [ppc64], 8.00~svn3363-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
SETI@home application for the BOINC client (with graphics)
boolector (1.5.118.6b56be4.121013-1+b1 [ppc64], 1.5.118.6b56be4.121013-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
SMT solver for bit-vectors and arrays
bowtie (1.1.2-3 [amd64, arm64, kfreebsd-amd64, ppc64el], 1.0.1-2 [x32], 1.0.0-6 [alpha, hppa, ppc64, sh4, sparc64])
Ultrafast memory-efficient short read aligner
bowtie-examples (1.1.2-3)
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.2.9-2 [amd64], 2.2.5-2+b1 [kfreebsd-amd64])
ultrafast memory-efficient short read aligner
bowtie2-examples (2.2.9-2)
Examples for bowtie2
boxshade (3.3.1-9+b1 [ppc64], 3.3.1-9 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Pretty-printing of multiple sequence alignments
bppphyview (0.3.0-1+b1 [ppc64], 0.3.0-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Bio++ Phylogenetic Viewer
bppsuite (0.8.0-1+build1)
Bio++ program suite
brig (0.95+dfsg-1)
BLAST Ring Image Generator
bwa (0.7.13-1 [amd64, kfreebsd-amd64], 0.7.5a-1 [x32], 0.6.2-1 [alpha, m68k, ppc64, sh4, sparc64], 0.5.9-2 [hppa])
Burrows-Wheeler Aligner
cafeobj (1.5.4-4)
new generation algebraic specification and programming language
cafeobj-mode (1.5.4-4)
Emacs major mode for editing CafeOBJ source code
cain (1.10+dfsg-1)
simulations of chemical reactions
cain-examples (1.10+dfsg-1)
examples for cain
cain-solvers (1.10+dfsg-1+b1 [ppc64], 1.10+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
solvers for cain
calculix-ccx (2.10-1+b1 [ppc64], 2.10-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Three-Dimensional Structural Finite Element Program
calculix-cgx (2.10.1+dfsg-1)
Calculix cgx is a 3-dimensional pre- and post-processor for fem
camitk-actionstatemachine (4.0.0~beta-2 [amd64, i386], 3.4.0-2+b1 [sparc64], 3.4.0-2 [hppa, x32], 3.4.0-1 [alpha], 3.2.2-2 [ppc64])
pipeline replay application for the CamiTK library
camitk-imp (4.0.0~beta-2 [amd64, i386], 3.4.0-2+b1 [sparc64], 3.4.0-2 [hppa, x32], 3.4.0-1 [alpha], 3.2.2-2 [ppc64])
workbench application for the CamiTK library
caret (5.6.4~dfsg.1-3) [debports]
Computerized Anatomical Reconstruction and Editing Toolkit
cassiopee (1.0.4+dfsg-1+b1 [amd64, ppc64], 1.0.4+dfsg-1 [alpha, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
index and search tool in genomic sequences
cba (0.3.6-4.1+b2 [ppc64], 0.3.6-4.1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x, x32], 0.3.6-4.1 [mips64el, sh4, sparc64], 0.3.6-4 [m68k])
Continuous Beam Analysis
cbflib-bin (0.9.2.2-1+b1 [ppc64], 0.9.2.2-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
utilities to manipulate CBF files
cbmc (5.4-2 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sparc64, x32], 5.3-1 [hppa, sh4])
bounded model checker for C and C++ programs
cclib (1.3.1-1)
Parsers and algorithms for computational chemistry
cclib-data (1.1-1) [non-free]
Parsers and algorithms for computational chemistry (data files)
cd-hit (4.6.5-1+b1 [ppc64], 4.6.5-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
suite of programs designed to quickly group sequences
cdbfasta (0.99-20100722-2+b1 [ppc64], 0.99-20100722-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Constant DataBase indexing and retrieval tools for multi-FASTA files
celestia-common-nonfree (1.6.1-1) [non-free]
Non-free datafiles for Celestia, a real-time visual space simulation
celestia-glut (1.6.1+dfsg-3.1) [debports]
real-time visual space simulation (GLUT frontend)
cernlib (20061220+dfsg3-4.2)
CERNLIB data analysis suite - general use metapackage
cernlib-core (20061220+dfsg3-4.2)
CERNLIB data analysis suite - main libraries and programs
cernlib-extras (20061220+dfsg3-4.2)
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-3)
CERNLIB Monte Carlo libraries
cg3 (0.9.9~r10793-1+b3 [ppc64, sh4], 0.9.9~r10793-1+b2 [hppa, sparc64, x32], 0.9.9~r10793-1+b1 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x], 0.9.9~r10793-1 [alpha, m68k, mips64el, powerpcspe])
Tools for using the 3rd edition of Constraint Grammar (CG-3)
cgns-convert (3.1.4.2-2+b3 [ppc64], 3.1.4.2-2+b2 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x], 3.1.4.2-2+b1 [arm64, hppa, m68k, ppc64el, sh4, sparc64, x32], 3.1.4.2-2 [mips64el])
CFD General Notation System - Conversion tools
cgview (0.0.20100111-1+b1 [ppc64], 0.0.20100111-1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4])
Circular Genome Viewer
ch5m3d (1.2.5+dfsg-1)
create and visualize 3-dimensional drawings of simple molecules
chemical-structures (2.2.dfsg.0-12)
set of molecular structures in open formats
chemps2 (1.6-3+b1 [ppc64], 1.6-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 1.6-1 [sh4])
Executable to call libchemps2-1 from the command line
chemtool (1.6.14-1+b1 [ppc64], 1.6.14-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
chemical structures drawing program
chimeraslayer (20101212+dfsg1-1)
detects likely chimeras in PCR amplified DNA
choreonoid (1.1.0+dfsg-6.2+b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x], 1.1.0+dfsg-6.2+b1 [mips64el], 1.1.0+dfsg-6.2 [hurd-i386])
Integrated robotics GUI environment
choreonoid-data (1.1.0+dfsg-6.2)
Integrated robotics GUI environment - shared data
choreonoid-plugins-base (1.1.0+dfsg-6.2+b2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x], 1.1.0+dfsg-6.2+b1 [mips64el], 1.1.0+dfsg-6.2 [hurd-i386])
Integrated robotics GUI environment - core plug-ins
circlator (1.2.1-1)
circularize genome assemblies
circos (0.69.2+dfsg-1)
plotter for visualizing data
circos-tools (0.21-1)
plotter for visualizing data - helper utilities
ckon (0.7.1-3+b2 [ppc64], 0.7.1-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 0.7.1-3 [m68k, mips64el, powerpcspe])
automatic build tool for ROOT data analysis software
clearcut (1.0.9-1+b2 [ppc64], 1.0.9-1+b1 [hppa], 1.0.9-1 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x])
extremely efficient phylogenetic tree reconstruction
clinica (0.3.0-1) [debports]
Simple medical records manager
clinica-dev (0.3.0-1) [debports]
Simple medical records manager (development files)
clinica-plugins (0.3.0-1) [debports]
Simple medical records manager (plugins)
clonalframe (1.2-4+b1 [ppc64], 1.2-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
inference of bacterial microevolution using multilocus sequence data
clustalo (1.2.1-2+b1 [ppc64], 1.2.1-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
General purpose multiple sequence alignment program for proteins
clustalw (2.1+lgpl-4+b2 [ppc64], 2.1+lgpl-4+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 2.1+lgpl-4 [mips64el, powerpcspe])
global multiple nucleotide or peptide sequence alignment
clustalx (2.1+lgpl-4+b1 [ppc64], 2.1+lgpl-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Multiple alignment of nucleic acid and protein sequences (graphical interface)
cluster3 (1.52a-1) [non-free]
Reimplementation of the Eisen-clustering software
cmor-tables (1.0-1)
MIP tables for the Climate Model Output Rewriter library
cmtk (3.2.2-1.4+b1 [ppc64], 3.2.2-1.4 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, x32], 3.2.2-1.3 [sparc64])
Computational Morphometry Toolkit
cnrun (1.1.14-1.1+b1 [ppc64], 1.1.14-1.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
NeuroML-capable neuronal network simulator
code-aster (11.5.0+dfsg2-4+b2 [amd64, armel, armhf, i386, mips, mipsel, powerpc], 11.3.0-2-2 [alpha])
Code_Aster finite element program - metapackage
code-aster-engine (11.3.0-2-2) [debports]
Code_Aster finite element program - sequential binary
code-aster-gui (1.13.1-2)
Graphical user interface for Code_Aster - client
code-aster-mpi-engine (11.5.0+dfsg2-4+b2 [amd64, armel, armhf, i386, mips, mipsel, powerpc], 11.3.0-2-2 [alpha])
Code_Aster finite element program - parallel binary
code-aster-run (1.13.1-2)
Graphical user interface for Code_Aster - server
code-aster-test (11.5.0+dfsg2-4)
Code_Aster finite element program - test files and examples
code-saturne (4.2.1+repack-1+b1 [mips, mips64el, mipsel, ppc64], 4.2.1+repack-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, s390x, sh4, sparc64, x32])
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (4.2.1+repack-1+b1 [mips, mips64el, mipsel, ppc64], 4.2.1+repack-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, s390x, sh4, sparc64, x32])
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (4.2.1+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-doc (4.2.1+repack-1)
General purpose Computational Fluid Dynamics (CFD) software - Documentation
code-saturne-include (4.2.1+repack-1+b1 [mips, mips64el, mipsel, ppc64], 4.2.1+repack-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, s390x, sh4, sparc64, x32])
General purpose Computational Fluid Dynamics (CFD) software - includes
codonw (1.4.4-3+b1 [ppc64], 1.4.4-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Correspondence Analysis of Codon Usage
coinor-cbc (2.8.12-1+b3 [hppa], 2.8.12-1+b1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 2.8.12-1 [m68k, mips64el])
Coin-or branch-and-cut mixed integer programming solver
coinor-clp (1.15.10-1+b3 [hppa], 1.15.10-1+b2 [ppc64], 1.15.10-1+b1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.15.10-1 [mips64el])
Coin-or linear programming solver
coinor-csdp (6.1.1-1+b3 [hppa, hurd-i386], 6.1.1-1+b2 [ppc64], 6.1.1-1+b1 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4], 6.1.1-1 [m68k, sparc64, x32])
A software package for semidefinite programming
coinor-libcbc3 (2.8.12-1+b3 [hppa], 2.8.12-1+b1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 2.8.12-1 [m68k, mips64el])
Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl0 (0.55.0-1.1) [debports]
Cut Generator Library, a library of cutting-plane generators
coinor-libcgl1 (0.58.9-1+b3 [hppa], 0.58.9-1+b1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 0.58.9-1 [m68k, mips64el])
COIN-OR Cut Generation Library
coinor-libclp0 (1.12.0-2.1) [debports]
Coin-or linear programming solver
coinor-libclp1 (1.15.10-1+b3 [hppa], 1.15.10-1+b2 [ppc64], 1.15.10-1+b1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.15.10-1 [mips64el])
Coin-or linear programming solver (shared libraries)
coinor-libcoinutils0 (2.6.4-3) [debports]
Coin-or collection of utility classes
coinor-libcoinutils3 (2.9.15-1) [debports]
Coin-or collection of utility classes (binaries and libraries)
coinor-libcoinutils3v5 (2.9.15-3.1+b1 [ppc64, sparc64], 2.9.15-3.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32])
Coin-or collection of utility classes (binaries and libraries)
coinor-libflopc++0 (1.0.6-3.1+b3 [hurd-i386], 1.0.6-3.1+b2 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x], 1.0.6-3.1+b1 [hppa, m68k, ppc64el, sh4, sparc64, x32], 1.0.6-3.1 [arm64, mips64el])
Formulation of Linear Optimization Problems in C++
coinor-libosi0 (0.103.0-1) [debports]
COIN-OR Open Solver Interface
coinor-libosi1 (0.106.9-1) [debports]
COIN-OR Open Solver Interface
coinor-libosi1v5 (0.106.9-2+b2 [ppc64], 0.106.9-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32], 0.106.9-2 [sparc64])
COIN-OR Open Solver Interface
coinor-libsymphony0 (5.2.4-1.2) [debports]
COIN-OR solver for mixed-integer linear programs
coinor-libsymphony3 (5.6.1-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 5.6.1-1 [m68k, mips64el])
COIN-OR solver for mixed-integer linear programs (shared libraries)
coinor-symphony (5.6.1-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 5.6.1-1 [m68k, mips64el])
COIN-OR solver for mixed-integer linear programs
comet-ms (2014022-3+b2 [ppc64], 2014022-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Tandem mass spectrometry (MS/MS) search engine
concavity (0.1+dfsg-1+b1 [ppc64], 0.1+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
predictor of protein ligand binding sites from structure and conservation
connectome-workbench (1.2.0-1)
brain visualization, analysis and discovery tool
conquest-common (1.4.17d-1+b1 [ppc64], 1.4.17d-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
ConQuest DICOM Server - common files
conquest-dbase (1.4.17d-1+b1 [ppc64], 1.4.17d-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
ConQuest DICOM Server - DBaseIII backend
conquest-mysql (1.4.17d-1+b1 [ppc64], 1.4.17d-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
ConQuest DICOM Server - MySQL backend
conquest-postgres (1.4.17d-1+b1 [ppc64], 1.4.17d-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
ConQuest DICOM Server - PostgreSQL backend
conquest-sqlite (1.4.17d-1+b1 [ppc64], 1.4.17d-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
ConQuest DICOM Server - SQLite backend
conservation-code (20110309.0-4)
protein sequence conservation scoring tool
cp2k (2.6.2-3+b1 [ppc64], 2.6.2-3 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 2.6.2-1+b1 [hppa])
Ab Initio Molecular Dynamics
cp2k-data (2.6.2-3)
Ab Initio Molecular Dynamics (data files)
cpl-plugin-amber (4.3.4+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 4.3.3+dfsg-5+b1 [x32], 4.3.3+dfsg-3 [sh4])
ESO data reduction pipeline for the AMBER instrument
cpl-plugin-amber-calib (4.3.4+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for AMBER
cpl-plugin-fors (5.3.5+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 5.1.4+dfsg-2+b1 [x32], 5.0.11+dfsg-3 [sh4])
ESO data reduction pipeline for the FORS1/2 instruments
cpl-plugin-fors-calib (5.3.5+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for FORS2
cpl-plugin-giraf (2.14.3+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.14.2+dfsg-1+b1 [x32], 2.14+dfsg-3 [sh4])
ESO data reduction pipeline for the GIRAFFE instrument
cpl-plugin-giraf-calib (2.14.3+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for GIRAFFE
cpl-plugin-hawki (1.8.21+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 1.8.18+dfsg-5+b1 [x32], 1.8.18+dfsg-3 [sh4])
ESO data reduction pipeline for the HAWK-I instrument
cpl-plugin-hawki-calib (1.8.21+dfsg-1)
ESO data reduction pipeline calibration data downloader for HAWK-I
cpl-plugin-kmos (1.3.19+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 1.3.17+dfsg-1+b1 [x32], 1.3.12+dfsg-3 [sh4])
ESO data reduction pipeline for the KMOS instrument
cpl-plugin-kmos-calib (1.3.19+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for KMOS
cpl-plugin-muse (1.6+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 1.2.1+dfsg-2+b1 [x32], 1.0.4+dfsg-3 [sh4])
ESO data reduction pipeline for the MUSE instrument
cpl-plugin-muse-calib (1.6+dfsg-2) [contrib]
ESO data reduction pipeline calibration data downloader for MUSE
cpl-plugin-naco (4.4.1+dfsg-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 4.4.1+dfsg-2+b1 [x32], 4.4.0+dfsg-1 [sh4])
ESO data reduction pipeline for the NaCo instrument
cpl-plugin-naco-calib (4.4.1+dfsg-3) [contrib]
ESO data reduction pipeline NaCo calibration data downloader
cpl-plugin-sinfo (2.9.0+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.7.0+dfsg-1+b1 [x32], 2.6.0+dfsg-3 [sh4])
ESO data reduction pipeline for the SINFONI instrument
cpl-plugin-sinfo-calib (2.9.0+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for SINFONI
cpl-plugin-uves (5.7.0+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 5.5.7+dfsg-1+b1 [x32], 5.5.2+dfsg-3 [sh4])
ESO data reduction pipeline for the UVES instrument
cpl-plugin-uves-calib (5.7.0+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for UVES
cpl-plugin-vimos (3.1.4+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 3.0.6+dfsg-4+b1 [x32], 2.9.15+dfsg-4 [sh4])
ESO data reduction pipeline for the VIMOS instrument
cpl-plugin-vimos-calib (3.1.4+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for VIMOS
cpl-plugin-visir (4.2.0+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 4.1.7+dfsg-1 [x32], 3.5.1+dfsg-2 [sh4])
ESO data reduction pipeline for the VISIR instrument
cpl-plugin-visir-calib (4.2.0+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for VISIR
cpl-plugin-xshoo (2.7.1+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.6.8+dfsg-4+b1 [x32], 2.6.0+dfsg-3 [sh4])
ESO data reduction pipeline for the XSHOOTER instrument
cpl-plugin-xshoo-calib (2.7.1+dfsg-2) [contrib]
ESO data reduction pipeline calibration data downloader for XSHOOTER
critterding (1.0-beta12.1-1.2+b1 [ppc64], 1.0-beta12.1-1.2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Evolving Artificial Life
ctsim (5.2.0-2.1+b2 [ppc64], 5.2.0-2.1+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 5.2.0-2.1 [sh4], 5.2.0-1.1 [m68k])
Computed tomography simulator
ctsim-help (5.2.0-2.1)
Online help file for CTSim
cufflinks (2.2.1-1+b1) [non-free]
Transcript assembly, differential expression and regulation for RNA-Seq
cwltool (1.0.20160209222805-1)
Common workflow language reference implementation
daligner (1.0+20151214-1+b1 [ppc64], 1.0+20151214-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64])
local alignment discovery between long nucleotide sequencing reads
dans-gdal-scripts (0.23-6+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 0.23-2 [sh4])
GDAL contributed tools by Geographic Information Network of Alaska
datalad (0.2-1)
data files crawler and data distribution
dawg (1.2-1+b1 [ppc64], 1.2-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
program to simulate the evolution of recombinant DNA sequences
dazzdb (1.0-1+b1 [ppc64], 1.0-1 [alpha, amd64, arm64, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64])
manage nucleotide sequencing read data
dcmtk (3.6.1~20150924-5+b2 [ppc64], 3.6.1~20150924-5+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 3.6.1~20150924-5 [powerpcspe])
OFFIS DICOM toolkit command line utilities
dialign (2.2.1-7+b1 [ppc64], 2.2.1-7 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Segment-based multiple sequence alignment
dialign-tx (1.0.2-8+b1 [ppc64], 1.0.2-8 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-8)
Segment-based multiple sequence alignment (data files)
dicomnifti (2.32.1-1+b1 [ppc64], 2.32.1-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
converts DICOM files into the NIfTI format
dicompyler (0.4.2-3)
radiation therapy research platform
diet-agent (2.8.0-1+b3 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x], 2.8.0-1+b2 [ppc64, sh4], 2.8.0-1+b1 [hurd-i386], 2.8.0-1 [arm64, hppa, m68k, ppc64el, sparc64])
DIET grid middleware - agent
dimbl (0.12-2+b2 [ppc64], 0.12-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 0.12-2 [mips64el, powerpcspe])
Distributed Memory Based Learner
dindel (1.01+dfsg-1+b1 [ppc64], 1.01+dfsg-1 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, x32])
determines indel calls from short-read data
discosnp (1.2.6-1+b2 [ppc64], 1.2.6-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 1.2.6-1 [mips64el, powerpcspe])
discovering Single Nucleotide Polymorphism from raw set(s) of reads
disulfinder (1.2.11-5+b1 [ppc64], 1.2.11-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-5)
data files for predictor of disulfide bonds in proteins
dnaclust (3-3+b2 [ppc64], 3-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 3-3 [mips64el, powerpcspe])
tool for clustering millions of short DNA sequences
doris (4.06~beta2+dfsg-3+b1) [contrib]
Delft object-oriented radar interferometric software
dozzaqueux (3.42-1 [amd64, arm64, armel, armhf, i386, powerpc], 3.33-1 [ppc64])
simulator for chemical mixtures
dozzaqueux-data (3.42-1)
databases for chemical mixtures
drawxtl (5.5-3+b1 [ppc64], 5.5-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
crystal structure viewer
drslib (0.3.0a3-5)
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.1+b2 [ppc64], 5.8-9.1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 5.8-9.1 [powerpcspe])
Software for Semidefinite Programming
dssp (2.2.1-2+b3 [ppc64], 2.2.1-2+b2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390x, sh4, sparc64, x32], 2.2.1-2+b1 [arm64, ppc64el], 2.2.1-2 [mips64el, powerpcspe])
protein secondary structure assignment based on 3D structure
dwgsim (0.1.11-3+b1 [ppc64], 0.1.11-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
short sequencing read simulator
dx (1:4.4.4-9+b1 [ppc64], 1:4.4.4-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.4.0-2)
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-3)
Program to read/write Arcinfo compressed E00 files
ea-utils (1.1.2+dfsg-3+b1 [ppc64], 1.1.2+dfsg-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
command-line tools for processing biological sequencing data
easychem (0.6-8+b1 [ppc64], 0.6-8 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Draw high-quality molecules and 2D chemical formulas
ecaccess (4.0.1-1)
clients to access ECMWF facilities
ecopcr (0.5.0-1+b1 [ppc64], 0.5.0-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
estimate PCR barcode primers quality
edfbrowser (1.57-1+b1 [ppc64], 1.57-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
viewer for biosignal storage files such as bdf and edf
edtsurf (0.2009-3+b2 [ppc64], 0.2009-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 0.2009-3 [mips64el, powerpcspe])
triangulated mesh surfaces for protein structures
eficas (6.4.0-1-1.1)
Graphical editor for Code Aster command files
eigensoft (6.0.1+ds-1) [non-free]
reduction of population bias for genetic analyses
elastix (4.8-8 [amd64, i386], 4.5-4 [alpha, ppc64, x32], 4.4-2 [hppa])
toolbox for rigid and nonrigid registration of images
elk-lapw (2.3.22-1+b3 [s390x], 2.3.22-1+b2 [ppc64], 2.3.22-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sparc64, x32], 2.3.22-1 [m68k, powerpcspe, sh4])
All-Electron Density-Functional Electronic Structure Code
elki (0.7.1-1)
Data mining algorithm development framework
elki-dev (0.7.1-1)
Data mining algorithm development framework - development files
elmer (6.1.0.svn.5396.dfsg2-4+b3 [alpha, armel, armhf], 6.1.0.svn.5396.dfsg2-4+b2 [amd64, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel], 6.1.0.svn.5396.dfsg2-4+b1 [mips64el, x32], 6.1.0.svn.5396.dfsg2-3 [ppc64, s390x], 6.1.0.svn.5396.dfsg-5 [sh4], 5.5.0.svn.4499.dfsg-1 [hppa])
finite element multiphysics suite - binaries
elmer-common (6.1.0.svn.5396.dfsg2-4)
finite element multiphysics suite - architecture-independent files
embassy-domainatrix (0.1.650-1+b1 [ppc64], 0.1.650-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.650-1+b1 [ppc64], 0.1.650-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.650-1+b1 [ppc64], 1:0.1.650-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.69.650-2) [non-free]
EMBOSS conversions of the programs in the phylip package
emboss (6.6.0+dfsg-3+b2 [ppc64], 6.6.0+dfsg-3+b1 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 6.6.0+dfsg-1 [hppa, m68k])
European molecular biology open software suite
emboss-data (6.6.0+dfsg-3)
data files for the EMBOSS package
emboss-explorer (2.2.0-8)
web-based GUI to EMBOSS
emboss-lib (6.6.0+dfsg-3+b2 [ppc64], 6.6.0+dfsg-3+b1 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 6.6.0+dfsg-1 [hppa, m68k])
EMBOSS Libraries
engauge-digitizer (7.2-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 5.2-1 [m68k, sh4])
interactively extracts numbers from bitmap graphs or maps
ent (1.2debian-1+b1 [ppc64], 1.2debian-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
pseudorandom number sequence test program
epigrass (2.4.0-4)
scientific tool for simulations and scenario analysis in network epidemiology
epsilon-bin (0.9.2+dfsg-2)
Library for wavelet image compression - tools
ergo (3.4.0-2+b1 [ppc64], 3.4.0-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 3.2.1-1 [x32])
Quantum chemistry program for large-scale calculations
eso-midas (15.09pl1.0-1+b1 [ppc64], 15.09pl1.0-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, x32], 13.09pl1.4-1 [sh4, sparc64])
European Southern Observatory Munich Image Data Analysis System
eso-pipelines (1.1)
ESO VLT Instrument pipeline collection
esorex (3.12.3-1+b1 [alpha, mips, mips64el, ppc64], 3.12.3-1 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Execution Tool for European Southern Observatory pipelines
esys-particle (2.3.3+dfsg1-2+b1 [ppc64, s390x], 2.3.3+dfsg1-2 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, x32], 2.3.3+dfsg1-1 [hppa], 2.3-2+b1 [alpha], 2.1-2 [sh4])
Software for particle-based numerical modelling. MPI version.
etsf-io (1.0.4-1~exp1.1+b2 [ppc64], 1.0.4-1~exp1.1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.0.4-1~exp1.1 [sh4])
Binary tools to check, merge and read ETSF files
exonerate (2.4.0-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sparc64, x32], 2.4.0-1 [sh4], 2.2.0-7 [m68k])
generic tool for pairwise sequence comparison
expeyes (4.1.1+dfsg-2)
hardware & software framework for developing science experiments
expeyes-clib (4.1.1+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 4.1.1+dfsg-1 [hurd-i386])
hardware & software framework for developing science experiments
falconkit (0.1.3+20140820-1)
genome assembly toolkit
fastaq (3.12.1-1)
FASTA and FASTQ file manipulation tools
fastdnaml (1.2.2-11+b1 [ppc64], 1.2.2-11 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix100+dfsg-1+b1 [ppc64], 4.1P-fix100+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
faster version of pedigree programs of Linkage
fastml (3.1-3)
maximum likelihood ancestral amino-acid sequence reconstruction
fastqc (0.11.5+dfsg-2)
quality control for high throughput sequence data
fasttree (2.1.9-1)
phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit (0.0.14-1+b1 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x], 0.0.14-1 [hppa, m68k, mips64el, powerpcspe, sh4, sparc64, x32])
FASTQ/A short nucleotide reads pre-processing tools
fcc (2.8-1+b1 [ppc64], 2.8-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64])
Script to compile C/C++ programs and link to Fortran libraries
feedgnuplot (1.37-1)
Pipe-oriented frontend to Gnuplot
ffindex (0.9.9.7-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sparc64, x32], 0.9.9.6-2 [m68k, sh4])
simple index/database for huge amounts of small files
figtree (1.4.2+dfsg-2)
graphical phylogenetic tree viewer
filo (1.1.0-3+b1 [ppc64], 1.1.0-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
FILe and stream Operations
fitgcp (0.0.20130418-2 [amd64, arm64, armel, kfreebsd-amd64, m68k, mipsel, ppc64el, sh4, x32], 0.0.20130418-1+b1 [alpha], 0.0.20130418-1 [sparc64])
fitting genome coverage distributions with mixture models
fitscut (1.4.4-4+b2 [ppc64], 1.4.4-4+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Extract cutouts from FITS image format files
fitspng (0.3.5-1)
FITS to PNG converter
fitsverify (4.18-1)
FITS File Format-Verification Tool
fityk (1.2.1-0.1+b2 [ppc64], 1.2.1-0.1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x, x32], 1.2.1-0.1 [mips64el, sh4, sparc64], 0.8.8-1 [m68k])
general-purpose nonlinear curve fitting and data analysis
flexbar (2.50-2+b1 [ppc64], 2.50-2 [amd64, arm64, armhf, hppa, i386, m68k, mips64el, mipsel, powerpc, powerpcspe, ppc64el, sh4, sparc64, x32])
flexible barcode and adapter removal for sequencing platforms
flextra (5.0-4+b1 [ppc64], 5.0-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Trajectory model for tracing air transport phenomena
foma-bin (0.9.18+r243-1+b2 [ppc64], 0.9.18+r243-1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4])
Xerox-compatible finite-state compiler - library
fractalnow (0.8.1-1+b1 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x], 0.8.1-1 [alpha, arm64, hppa, m68k, mips64el, ppc64el, sh4, sparc64, x32])
Fast, advanced fractal generator
(1.4.77-1.1+b1 [ppc64], 1.4.77-1.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Free42 is a re-implementation of the HP-42S calculator
freecad (0.16+dfsg2-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 0.12.5284-dfsg-7 [sh4])
Extensible Open Source CAx program (alpha)
freecontact (1.0.21-4+b1 [mips, ppc64], 1.0.21-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
fast protein contact predictor
freediams (0.9.4-1+b1 [ppc64], 0.9.4-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
pharmaceutical drug prescription and interaction manager
freefoam (0.1.0+dfsg+1-3)
programs for Computational Fluid Dynamics (CFD)
freemedforms-common-resources (0.9.4-1)
common data for the FreeMedForms project applications
freemedforms-emr (0.9.4-1+b1 [ppc64], 0.9.4-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
electronic medical record manager
freemedforms-emr-resources (0.9.4-1)
data for the FreeMedForms EMR
freemedforms-freedata (0.9.4-1)
free extra-data for the FreeMedForms project
freemedforms-libs (0.9.4-1+b1 [ppc64], 0.9.4-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
common libs for the FreeMedForms project
freemedforms-project (0.9.4-1)
FreeMedForms project
freemedforms-theme (0.9.4-1)
theme for the FreeMedForms project
frog (0.12.20-1+b1 [ppc64], 0.12.20-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
tagger and parser for natural languages (runtime)
frogdata (0.4-1)
Data files for Frog
fsl (5.0.8-5) [non-free]
transitional dummy package
fsl
virtual package provided by fsl-5.0-core
fsl-5.0-core (5.0.8-5+b1 [amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips64el, powerpc, ppc64el, s390x], 5.0.8-5 [mips, mipsel]) [non-free]
analysis tools for FMRI, MRI and DTI brain imaging
fsl-core (5.0.8-5) [non-free]
metapackage for the latest version of FSL
fslview (4.0.1-6+b1 [ppc64], 4.0.1-6 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, s390x, sparc64, x32], 3.0.2+4.1.2-2 [m68k])
viewer for (f)MRI and DTI data
fsm-lite (1.0-2)
frequency-based string mining (lite)
ftools-fv (5.4+dfsg-1)
Tool for viewing and editing FITS format files
ftools-pow (5.4+dfsg-1+b3 [ppc64], 5.4+dfsg-1+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 5.4+dfsg-1 [powerpcspe])
Curve plotting and image display interface tool
funtools (1.4.6+git150811-2+b1 [ppc64], 1.4.6+git150811-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64], 1.4.4+dfsg2-1 [x32])
Minimal buy-in FITS utility package
fxt-tools (0.3.1-1+b1 [amd64, ppc64], 0.3.1-1 [alpha, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Multithreaded tracing library
g3data (1:1.5.3-2.1+b1 [ppc64], 1:1.5.3-2.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
extract data from scanned graphs
gabedit (2.4.8-2+b1 [ppc64], 2.4.8-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
graphical user interface to Ab Initio packages
gamgi (0.17.1-1+b1 [ppc64], 0.17.1-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.17.1-1)
General Atomistic Modelling Graphic Interface (data)
garlic (1.6-1.1+b1 [armhf, hurd-i386, ppc64], 1.6-1.1 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
A visualization program for biomolecules
gasic (0.0.r18-3 [amd64, kfreebsd-amd64], 0.0.r18-1 [arm64, m68k, sh4, sparc64])
genome abundance similarity correction
gausssum (3.0.1-1)
parse and display Gaussian, GAMESS, and etc's output
gazebo7 (7.0.0+dfsg-2+b3 [amd64, arm64, armhf, i386, mipsel], 7.0.0+dfsg-2 [mips64el], 7.0.0+dfsg-1+b1 [hppa])
Open Source Robotics Simulator - Binaries
gazebo7-common (7.0.0+dfsg-2)
Open Source Robotics Simulator - Shared files
gazebo7-plugin-base (7.0.0+dfsg-2+b3 [amd64, arm64, armhf, i386, mipsel], 7.0.0+dfsg-2 [mips64el], 7.0.0+dfsg-1+b1 [hppa])
Open Source Robotics Simulator - base plug-ins
gbrowse (2.54+dfsg-6)
GMOD Generic Genome Browser
gbrowse-calign (2.54+dfsg-6+b2 [ppc64], 2.54+dfsg-6+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 2.54+dfsg-6 [kfreebsd-amd64, kfreebsd-i386, powerpcspe], 2.54+dfsg-3 [hurd-i386])
CAlign helper
gbrowse-data (2.54+dfsg-6)
Sample data to use GBrowse
gbutils (5.6.8-1+b1 [ppc64], 5.6.8-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
utilities for command line econometrics
gchempaint (0.14.10-2+b2 [ppc64], 0.14.10-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, x32], 0.14.10-2 [mips64el, sh4, sparc64])
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.14.10-2+b2 [ppc64], 0.14.10-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, x32], 0.14.10-2 [mips64el, sh4, sparc64])
lightweight crystal structures visualizer
gcu-bin (0.14.10-2+b2 [ppc64], 0.14.10-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, x32], 0.14.10-2 [mips64el, sh4, sparc64])
GNOME chemistry utils (helper applications)
gcu-plugin (0.14.10-2+b2 [ppc64], 0.14.10-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, x32], 0.14.10-2 [mips64el, sh4, sparc64])
GNOME chemistry utils (browser plugin)
gcx (1.3-1.1+b1 [armhf, hurd-i386, ppc64], 1.3-1.1 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
astronomical image processing and photometry gtk+ application
gdal-bin (2.1.0+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 1.10.1+dfsg-8 [sh4], 1.5.4-2 [m68k])
Geospatial Data Abstraction Library - Utility programs
gdis (0.90-5+b1 [ppc64], 0.90-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
molecular and crystal model viewer
gdis-data (0.90-5)
molecular and crystal model viewer (data files)
gdl-astrolib (2016.04.19+dfsg-1)
Low-level astronomy software for GDL
gdl-coyote (2016.01.14-1)
GDL library from D. Fannings IDL courses
gdl-mpfit (1.82+2013.08.14-3)
Robust non-linear least squares curve fitting for GDL
gdpc (2.2.5-4+b1 [ppc64], 2.2.5-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-4)
example files for the gdpc program
geant321 (1:3.21.14.dfsg-11)
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-11)
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-9+b2 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x], 1.2.0-9+b1 [alpha, hppa, m68k, sh4, sparc64, x32], 1.2.0-9 [mips64el])
Periodic Table viewer
genometools (1.5.8+ds-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sh4, x32], 1.5.7-3 [m68k])
versatile genome analysis toolkit
genometools-common (1.5.8+ds-3)
shared data files for GenomeTools
gentle (1.9+cvs20100605+dfsg1-4+b1 [ppc64], 1.9+cvs20100605+dfsg1-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 1.9+cvs20100605+dfsg1-2 [m68k])
suite to plan genetic cloning
geographiclib-tools (1.46-2+b1 [ppc64], 1.46-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
C++ library to solve some geodesic problems -- tools
geotiff-bin (1.4.1-3)
GeoTIFF (geografic enabled TIFF) library -- tools
gerris (20131206+dfsg-8 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sh4, sparc64, x32], 20131206+dfsg-6 [m68k])
Fluid Flow Solver
gerris-mpi (20131206+dfsg-6 [m68k], 20131206+dfsg-4 [arm64]) [debports]
Fluid Flow Solver
getdata (0.2-1)
management of external databases
gff2aplot (2.0-8+b1 [ppc64], 2.0-8 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-5)
produces PostScript graphical output from GFF-files
gfsview (20121130+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64], 20121130+dfsg-1+b1 [sh4, x32], 20121130+dfsg-1 [m68k])
graphical viewer for Gerris simulation files
gfsview-batch (20121130+dfsg-2)
batch-version of viewer for Gerris simulation files
ghkl (5.0.0.2080-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, x32], 4.99.99.1955-1 [sparc64], 4.0.3-4 [m68k, sh4])
diffractometer computation control application
giella-core (0.1.1~r129227+svn121148-1)
GTCORE files for building Giellatekno language packages
giira (0.0.20140210-2 [amd64, kfreebsd-amd64], 0.0.20140210-1+b1 [alpha], 0.0.20140210-1 [arm64])
RNA-Seq driven gene finding incorporating ambiguous reads
ginga (2.5.20160420043855-2)
Astronomical image viewer
ginkgocadx (3.8.2-1 [amd64, i386], 3.7.0.1465.37+dfsg-1 [alpha, hppa], 3.6.0.1228.33+dfsg-1 [ppc64])
Medical Imaging Software and complete DICOM Viewer
glam2 (1064-3+b2 [hppa], 1064-3+b1 [ppc64], 1064-3 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
gapped protein motifs from unaligned sequences
gliese (3.0.95-2) [non-free]
stellar data set from the Third Catalogue of Nearby Stars
glueviz (0.7.3+dfsg1-1)
Linked data visualization
gmap (2016-05-01-1) [non-free]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (5.2.1+dfsg-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 4.5.11-1 [sh4], 4.5.7-2 [m68k])
Generic Mapping Tools
gmt-common (5.2.1+dfsg-5)
Generic Mapping Tools - Architecture-independent files
gmt-dcw (1.1.2-1)
Digital Chart of the World (DCW) for GMT
gmt-gshhg (2.3.5-1)
Global Self-consistent Hierarchical High-resolution Geography (GSHHG)
gmt-gshhg-full (2.3.5-1)
Full resolution coastlines for the Generic Mapping Tools
gmt-gshhg-high (2.3.5-1)
High resolution coastlines for the Generic Mapping Tools
gmt-gshhg-low (2.3.5-1)
Low resolution coastlines for the Generic Mapping Tools
gpaw (0.11.0.13004-3+b2 [ppc64, s390x], 0.11.0.13004-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sh4, sparc64, x32], 0.11.0.13004-3 [powerpcspe])
DFT and beyond within the projector-augmented wave method
gpaw-data (0.9.20000-1)
gpaw datasets/setups
gperiodic (2.0.10-7+b1 [ppc64], 2.0.10-7 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
periodic table application
gpiv (0.6.1-2.3) [debports]
GUI program for Particle Image Velocimetry
gpiv-mpi (0.6.1-2.3) [debports]
GUI program for Particle Image Velocimetry - MPI version
gpivtools (0.6.0-3.1) [debports]
command line programs for Particle Image Velocimetry
gpivtools-mpi (0.6.0-3.1) [debports]
command line programs for Particle Image Velocimetry - MPI version
gpx (2.4.3-4)
Gcode to x3g conversion post processor
gpx2shp (0.71.0-3)
convert GPS or GPX file to ESRI Shape file
gr-fcdproplus (3.7.24.cf5db38-5+b1 [ppc64], 3.7.24.cf5db38-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32])
Funcube Dongle Pro Plus controller for GNU Radio
grass (7.0.4-1 [all], 6.4.0~rc3-3 [m68k])
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (7.0.4-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, x32], 6.4.2-2 [sh4])
GRASS GIS core components
grass-gui (7.0.4-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, x32], 6.4.2-2 [sh4])
GRASS GIS graphical user interfaces
gravit (0.5.1+dfsg-2+b2 [ppc64], 0.5.1+dfsg-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 0.5.1+dfsg-2 [powerpcspe])
visually stunning gravity simulator
gravit-data (0.5.1+dfsg-2)
data files for Gravit
gri (2.12.23-9+b2 [alpha, i386, ppc64], 2.12.23-9+b1 [amd64, arm64, armel, armhf, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64])
a language for scientific illustration
grinder (0.5.4-1)
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (5.1.2-1+b1 [ppc64], 5.1.2-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, x32], 5.1.1-2 [m68k])
Molecular dynamics simulator, with building and analysis tools
gromacs-data (5.1.2-1)
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (5.1.2-1+b1 [ppc64], 5.1.2-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, x32], 5.1.1-2 [m68k])
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (5.1.2-1+b1 [ppc64], 5.1.2-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32])
Molecular dynamics sim, binaries for OpenMPI parallelization
gubbins (1.4.9-1 [amd64, i386], 1.4.3-1 [kfreebsd-amd64])
phylogenetic analysis of genome sequences
gvb (1.4-1)
visual simulator of 1 and 2-dimensional vibrations
gwama (2.1+dfsg-2+b2 [ppc64, x32], 2.1+dfsg-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 2.1+dfsg-2 [mips64el, powerpcspe])
Genome-Wide Association Meta Analysis
gwyddion (2.45-1)
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.45-1)
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.45-1)
plugins for Gwyddion SPM analysis tool
gyoto (1.0.2-2+b2 [ppc64], 1.0.2-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 1.0.2-1 [sh4, x32], 0.0.3-5 [m68k])
General relativistic ray-tracing
h5utils (1.12.1-6)
HDF5 files visualization tools
harminv (1.4-1+b2 [ppc64, x32], 1.4-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 1.4-1 [mips64el, powerpcspe])
extraction of complex frequencies and amplitudes from time series
harvest-tools (1.2-2)
archiving and postprocessing for reference-compressed genomic multi-alignments
hdf5-helpers (1.8.16+docs-8 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 1.8.15-patch1+docs-4 [sh4])
Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools (1.8.16+docs-8 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 1.8.15-patch1+docs-4 [sh4])
Hierarchical Data Format 5 (HDF5) - Runtime tools
herisvm (0.7.0-1)
machine learning tools for classification algorithms
herwig++ (2.6.0-1.1 [amd64, kfreebsd-amd64, kfreebsd-i386, powerpc, x32], 2.6.0-1 [armel, armhf, i386])
Multi-purpose event generator for high energy physics
herwig++-data (2.6.0-1.1)
Herwig++ Data
herwig++-dev (2.6.0-1.1 [amd64, kfreebsd-amd64, kfreebsd-i386, powerpc, x32], 2.6.0-1 [armel, armhf, i386])
Herwig++ development files
hfst (3.9.0~r4595-3+b2 [ppc64], 3.9.0~r4595-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 3.9.0~r4595-3 [powerpcspe])
Helsinki Finite-State Transducer Technology
hfst-ospell (0.4.0~r4643-4)
Spell checker library and tool based on HFST
hhsuite (2.0.16-6)
sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data (2.0.16-6)
sensitive protein sequence searching based on HMM-HMM alignment (data)
hidrd (0.2.0-12 [amd64, arm64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpcspe, sh4, x32], 0.2.0-11 [armel, armhf, powerpc, ppc64el, s390x])
tools for parsing and generating HID report descriptors
hmmer (3.1b2-2 [amd64, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386], 3.1b2-1 [alpha, hppa, m68k, mips64el, ppc64, sh4, sparc64, x32], 3.1b1-3 [arm64])
profile hidden Markov models for protein sequence analysis
hmmer2 (2.3.2-9+b1 [ppc64], 2.3.2-9 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
profile hidden Markov models for protein sequence analysis
hmmer2-pvm (2.3.2-9+b1 [ppc64], 2.3.2-9 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.5-2+b1 [ppc64], 1.5-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
prints the date in latin
horae (071~svn537-2) [contrib]
interactive graphical processing and analysis of EXAFS data
hpcc (1.4.3-1+b3 [s390x], 1.4.3-1+b2 [ppc64], 1.4.3-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sh4, sparc64])
HPC Challenge benchmark
htcondor (8.4.2~dfsg.1-1+b3 [ppc64], 8.4.2~dfsg.1-1+b2 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el, s390x, x32], 8.4.2~dfsg.1-1 [hppa], 8.2.3~dfsg.1-5 [alpha])
distributed workload management system
hyphy-common (2.2.6+dfsg-3)
Hypothesis testing using Phylogenies (common files)
hyphy-mpi (2.2.6+dfsg-3+b3 [ppc64, s390x], 2.2.6+dfsg-3+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sh4, sparc64], 2.2.6+dfsg-3 [m68k])
Hypothesis testing using Phylogenies (MPI version)
hyphy-pt (2.2.6+dfsg-3+b3 [ppc64, s390x], 2.2.6+dfsg-3+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sh4, sparc64], 2.2.6+dfsg-3 [m68k])
Hypothesis testing using Phylogenies (pthreads version)
hyphygui (2.2.6+dfsg-3+b3 [ppc64, s390x], 2.2.6+dfsg-3+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sh4, sparc64], 2.2.6+dfsg-3 [m68k])
Hypothesis testing using Phylogenies (GTK+ gui)
idba (1.1.2-1+b2 [hppa, ppc64, s390x, x32], 1.1.2-1+b1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, ppc64el, sparc64], 1.1.2-1 [mips64el])
iterative De Bruijn Graph De Novo short read assembler for transcriptome
ifeffit (2:1.2.11d-10+b1 [amd64, i386], 2:1.2.11d-10 [arm64, armel, powerpc]) [contrib]
Interactive XAFS analysis program
ifrit (4.1.2-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, x32], 3.4.2-2 [sparc64], 3.3.4-2+b2 [sh4], 3.2.5-1 [m68k])
powerful tool for visualizing 3-dimensional data sets
igv (2.3.68+dfsg-1) [non-free]
Integrative Genomics Viewer
imagej (1.50i+dfsg-1)
Image processing program inspired by NIH Image
imagevis3d (3.1.0-4+b2 [ppc64], 3.1.0-4+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
desktop volume rendering application for large data
imview (1.1.9c-16)
Image viewing and analysis application
indelible (1.03-2+b1 [ppc64], 1.03-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
powerful and flexible simulator of biological evolution
indigo-utils (1.1.12-1.1+b1 [ppc64], 1.1.12-1.1 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64])
Organic Chemistry Toolkit Utilities
infernal (1.1.1-4 [amd64, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, x32], 1.0.2-2 [alpha, m68k, ppc64, sh4, sparc64], 1.0.2-1 [hppa])
inference of RNA secondary structural alignments
ipig (0.0.r5-2+b1 [ppc64], 0.0.r5-2 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
integrating PSMs into genome browser visualisations
iqtree (1.3.11.1+dfsg-1)
efficient phylogenetic software by maximum likelihood
ismrmrd-schema (1.3.2-3)
ISMRM Raw Data format (ISMRMRD) - XML schema
ismrmrd-tools (1.3.2-3+b1 [ppc64], 1.3.2-3 [alpha, amd64, arm64, armel, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, x32], 1.3.2-2 [sparc64], 1.2.3-3 [hppa])
ISMRM Raw Data format (ISMRMRD) - binaries
itksnap (3.4.0-2 [amd64, i386], 2.2.0-1.1 [alpha, hppa, ppc64, x32])
semi-automatic segmentation of structures in 3D images
iva (1.0.6+ds-1)
iterative virus sequence assembler
jaligner (1.0+dfsg-2)
Smith-Waterman algorithm with Gotoh's improvement
jalview (2.7.dfsg-5)
multiple alignment editor
jblas (1.2.3-6)
fast linear algebra library for Java
jellyfish (2.2.5-1 [amd64], 2.1.4-1 [kfreebsd-amd64])
count k-mers in DNA sequences
jellyfish-examples (2.2.5-1 [amd64], 2.1.4-1 [kfreebsd-amd64])
count k-mers in DNA sequences (examples for testing)
jemboss (6.6.0+dfsg-3)
graphical user interface to EMBOSS
jmodeltest (2.1.10+dfsg-1)
HPC selection of models of nucleotide substitution
jmol (12.2.32+dfsg2-1)
Molecular Viewer
julia (0.4.5-3+b1)
high-performance programming language for technical computing
julia-common (0.4.5-3)
high-performance programming language for technical computing (common files)
julia-factcheck (0.1.2-2)
Midje-like testing for Julia
kalign (1:2.03+20110620-2+b1 [armhf, hurd-i386, ppc64], 1:2.03+20110620-2 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Global and progressive multiple sequence alignment
kalzium (4:16.04.0-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64], 4:15.08.0-1 [kfreebsd-amd64, kfreebsd-i386], 4:4.12.2-2 [m68k], 4:4.7.4-2 [sh4])
periodic table and chemistry tools
kalzium-data (4:16.04.0-1)
data files for Kalzium
khmer-common (2.0+dfsg-6)
common files for the khmer project tools
kineticstools (0.5.1+20150828+git3aa3d96+dfsg-2)
detection of DNA modifications
kineticstools-data (0.5.1+20150828+git3aa3d96+dfsg-2)
detection of DNA modifications -- data files
king-probe (2.13.110909-2)
Evaluate and visualize protein interatomic packing
kissplice (2.3.1-1 [amd64, arm64, kfreebsd-amd64, mips64el, ppc64el, sparc64, x32], 2.2.1-1 [alpha, m68k], 2.1.0-1 [hppa, hurd-i386, ppc64, sh4])
Detection of various kinds of polymorphisms in RNA-seq data
klustakwik (2.0.1-1+b2 [hurd-i386, ppc64, x32], 2.0.1-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 2.0.1-1 [mips64el, powerpcspe])
automatic sorting of the samples (spikes) into clusters
kmc (2.3+dfsg-5)
count kmers in genomic sequences
kmer (0~20150903+r2013-1)
suite of tools for DNA sequence analysis
konclude (0.6.2~dfsg-2+b1 [ppc64], 0.6.2~dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
tableau-based description logic reasoner for the semantic web
kraken (0.10.5~beta-2+b1 [ppc64], 0.10.5~beta-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
assigning taxonomic labels to short DNA sequences
kst (2.0.3-5+b3 [ppc64], 2.0.3-5+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 2.0.3-3 [m68k])
scientific data plotting tool
kst-data (2.0.3-5)
set of data files for kst
kstars (4:15.08.3-1+b3 [ppc64], 4:15.08.3-1+b2 [amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 4:15.08.3-1+b1 [alpha], 4:4.13.1-1 [m68k])
desktop planetarium for KDE
kstars-data (4:15.08.3-1)
data files for KStars desktop planetarium
kstars-data-extra-tycho2 (1.1r1-9) [non-free]
Tycho-2 star catalog for KStars
kxterm (20061220+dfsg3-4.2+b1 [ppc64], 20061220+dfsg3-4.2 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32], 2006.dfsg.2-2 [m68k])
CERNLIB data analysis suite - KUIP terminal emulator
lammps (0~20151117.gite3c4db7-3+b3 [s390x], 0~20151117.gite3c4db7-3+b2 [ppc64], 0~20151117.gite3c4db7-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sparc64, x32], 0~20151117.gite3c4db7-3 [hurd-i386, m68k, powerpcspe, sh4])
Molecular Dynamics Simulator
last-align (737-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sh4, x32], 359-1 [sparc64])
genome-scale comparison of biological sequences
lbt (1.2.2-5+b2 [hurd-i386, ppc64, x32], 1.2.2-5+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 1.2.2-5 [mips64el, powerpcspe])
converts from LTL formulas to Büchi automata
leaff (0~20150903+r2013-1+b1 [ppc64], 0~20150903+r2013-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64])
biological sequence library utilities and applications
lhapdf-pdfsets-minimal (5.9.1-4)
Minimal PDF Sets of LHAPDF
libadios-bin (1.9.0-9+b1 [ppc64], 1.9.0-9 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.9.0-8 [hppa], 1.7.0-4 [sh4])
ADIOS Adaptable IO system for simulations - binaries
libadios-examples (1.7.0-4) [debports]
ADIOS Adaptable IO system for simulations - exampes
libapertium3-3.4-0 (3.4.0~r61013-5+b1 [mips, ppc64], 3.4.0~r61013-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Shared library for Apertium
libball1.4-data (1.4.3~beta1-1)
Biochemical Algorithms Library (data files)
libcamitk3 (3.4.0-2+b1 [sparc64], 3.4.0-2 [hppa, x32], 3.4.0-1 [alpha], 3.2.2-2 [ppc64]) [debports]
Computer Assisted Medical Intervention Tool Kit - runtime
libcamitk4 (4.0.0~beta-2)
Computer Assisted Medical Intervention Tool Kit - runtime
libcassie1 (1.0.1+dfsg-3) [debports]
library implementating search algorithms
libcassie1v5 (1.0.4+dfsg-1+b1 [amd64, ppc64], 1.0.4+dfsg-1 [alpha, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
library implementating search algorithms
libcg3-0 (0.9.9~r10793-1+b3 [ppc64, sh4], 0.9.9~r10793-1+b2 [hppa, sparc64, x32], 0.9.9~r10793-1+b1 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x], 0.9.9~r10793-1 [alpha, m68k, mips64el, powerpcspe])
Runtime for CG-3
libclassad3 (7.8.2~dfsg.1-1+deb7u1) [debports]
Condor classads expression language - runtime library
libclblas-bin (2.10-3 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sh4, sparc64, x32], 2.6-3 [alpha])
OpenCL BLAS library (executables)
libclhep2.1v5 (2.1.4.1-1.2+b1 [ppc64], 2.1.4.1-1.2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
CLHEP: A Class Library for High Energy Physics
libdivsufsort3 (2.0.1-2+b1 [ppc64], 2.0.1-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
fast suffix array construction
libdynamicedt3d1.6 (1.6.8+dfsg-2.1+b1 [ppc64], 1.6.8+dfsg-2.1 [alpha, amd64, arm64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.6.8+dfsg-1 [sh4])
Incrementally updatable Euclidean distance transform library
libgeotiff-epsg (1.4.1-3) [non-free]
GeoTIFF library -- EPSG Geodetic Parameter Dataset
libgfsgl0 (20121130+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64], 20121130+dfsg-1+b1 [sh4, x32], 20121130+dfsg-1 [m68k])
graphical viewer for Gerris simulation files. Shared library
libghemical-data (3.0.0-4.1)
Molecular Modelling Library (data files)
libgnuradio-fcdproplus0 (3.7.24.cf5db38-5+b1 [ppc64], 3.7.24.cf5db38-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32])
Funcube Dongle Pro Plus controller for GNU Radio
libgrits5 (0.8.1-2)
Grits is a Virtual Globe library
libgyoto0 (0.0.3-5) [debports]
General relativistic geodesic integration and ray-tracing
libgyoto2 (0.2.3-1) [debports]
General relativistic geodesic integration and ray-tracing
libgyoto4 (1.0.2-2+b2 [ppc64], 1.0.2-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 1.0.2-1 [sh4, x32])
General relativistic geodesic integration and ray-tracing
libhfst42 (3.9.0~r4595-3+b2 [ppc64], 3.9.0~r4595-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 3.9.0~r4595-3 [powerpcspe])
Helsinki Finite-State Transducer Technology Libraries
libhfstospell5 (0.4.0~r4643-4)
HFST spell checker runtime libraries
libismrmrd1.2 (1.2.3-3) [debports]
ISMRM Raw Data format (ISMRMRD) - shared library
libismrmrd1.3 (1.3.2-3+b1 [ppc64], 1.3.2-3 [alpha, amd64, arm64, armel, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, x32], 1.3.2-2 [sparc64])
ISMRM Raw Data format (ISMRMRD) - shared library
libjs-mgrs (0.0.3-2)
Javascript for converting between WGS84 lat/lng and MGRS coordinates
libjs-proj4 (2.3.14+ds-1)
JavaScript library to transform point coordinates systems
liblas-bin (1.8.0-10 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 1.8.0-1 [sh4])
ASPRS LiDAR data translation toolset
libliggghts3 (3.3.1+repack1-1+b1 [amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x], 3.3.1+repack1-1 [hppa, hurd-i386, mips64el, x32], 3.1.0+repack1-1 [alpha], 3.0.0+repack-1 [sparc64])
Open Source DEM Particle Simulation Software. Shared library
liblinear-tools (2.1.0+dfsg-2)
Standalone applications for LIBLINEAR
liblttoolbox3-3.3-0 (3.3.2~r63423-2) [debports]
Shared library for lttoolbox
liblttoolbox3-3.3-0v5 (3.3.2~r63423-3+b1 [ppc64], 3.3.2~r63423-3 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Shared library for lttoolbox
libncarg-bin (6.3.0-8+b2 [amd64], 6.3.0-8+b1 [alpha, arm64, armel, armhf, i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64])
NCAR command-language library - development tools
libncarg-data (6.3.0-8)
NCAR command-language library - Data
libocas-tools (0.97+dfsg-3)
Standalone applications implementing the OCAS solver
liboctomap1.6 (1.6.8+dfsg-1) [debports]
3D occupancy grid mapping approach library for mapping
liboctomap1.6v5 (1.6.8+dfsg-2.1+b1 [ppc64], 1.6.8+dfsg-2.1 [alpha, amd64, arm64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32])
3D occupancy grid mapping approach library for mapping
liboctovis1.6 (1.6.8+dfsg-1) [debports]
Visualization library for OctoMap
liboctovis1.6v5 (1.6.8+dfsg-2.1+b1 [ppc64], 1.6.8+dfsg-2.1 [alpha, amd64, arm64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32])
Visualization library for OctoMap
libopengm-bin (2.3.6+20160131-2 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips64el, mipsel, ppc64el, x32], 2.3.6+20160131-1 [sparc64])
command line tools for OpenGM
libotb (5.4.0+dfsg-1)
ORFEO Toolbox library metapackage
libotb-apps (5.4.0+dfsg-1)
Plugins for ORFEO Toolbox applications
libpwiz-tools (3.0.9393-1+b1 [ppc64], 3.0.9393-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
ProteoWizard command line tools
libqgis-customwidgets (2.14.3+dfsg-2)
QGIS custom widgets for Qt Designer
libqgis-server2.14.2 (2.14.2+dfsg-2) [debports]
QGIS - shared server library
libqgis-server2.14.3 (2.14.3+dfsg-2)
QGIS - shared server library
libqtpropertybrowser3 (3.4.0-2+b1 [sparc64], 3.4.0-2 [hppa, x32], 3.4.0-1 [alpha], 3.2.2-2 [ppc64]) [debports]
Qt Property Browser Library - runtime
libqtpropertybrowser4 (4.0.0~beta-2)
Qt Property Browser Library - runtime
librasterlite2-1 (1.0.0~rc0+devel1-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sh4, sparc64, x32], 1.0.0~rc0+devel1-2 [m68k])
library for huge raster coverages using a SpatiaLite DBMS
libsilo-bin (4.10.2-5+b4 [s390x], 4.10.2-5+b3 [ppc64], 4.10.2-5+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el], 4.10.2-5+b1 [mips64el, x32], 4.10.2-5 [m68k, sparc64], 4.8-13 [sh4])
Utilities to manipulate libsilo files
libsimgrid3.11 (3.11.1-10 [hppa, hurd-i386, m68k], 3.11.1-6 [arm64])
Toolkit for scalable simulation of distributed applications
libsimgrid3.12 (3.12-2+b1 [ppc64], 3.12-2 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64])
Toolkit for scalable simulation of distributed applications
libstxxl1v5 (1.4.1-2+b1 [ppc64], 1.4.1-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64])
C++ Standard Template Library for extra large datasets
libxy-bin (1.3-1.1+b1 [hppa, m68k, ppc64, sh4, sparc64, x32], 1.3-1.1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x])
xylib - utilities
libyade (1.20.0-9 [amd64, hppa, i386, kfreebsd-amd64, mips64el, powerpc, ppc64, ppc64el, s390x], 1.20.0-8+b1 [arm64], 1.20.0-8 [x32], 1.20.0-2 [kfreebsd-i386], 1.00.0-2 [alpha])
Platform for discrete element modeling. Libraries
liggghts (3.3.1+repack1-1+b1 [amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x], 3.3.1+repack1-1 [hppa, hurd-i386, mips64el, x32], 3.1.0+repack1-1 [alpha], 3.0.0+repack-1 [sparc64], 1.5.1-5 [sh4])
Open Source DEM Particle Simulation Software.
limereg (1.4.0-2+b1 [ppc64], 1.4.0-2 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Lightweight Image Registration
litl-tools (0.1.8-2+b1 [amd64, ppc64], 0.1.8-2 [alpha, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Lightweight Trace Library - tools
logcentral (2.7-1.1+b1 [ppc64], 2.7-1.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64])
Logging service for distributed applications
logcentral-tools (2.7-1.1+b1 [ppc64], 2.7-1.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64])
Logging service for distributed applications
logol (1.7.4-1)
Pattern matching tool using Logol language
logol-bin (1.7.4-1)
Pattern matching tool using Logol language
loki (2.4.7.4-6+b1 [ppc64], 2.4.7.4-6 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
MCMC linkage analysis on general pedigrees
looptools (2.8-1+b1 [ppc64], 2.8-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64])
Integral Evaluator of One-loop Feynman Diagram
ltrsift (1.0.2-7)
postprocessing and classification of LTR retrotransposons
ltrsift-examples (1.0.2-7)
example data for LTRsift
lttoolbox-dev (3.3.2~r63423-3+b1 [ppc64], 3.3.2~r63423-3 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32], 3.3.2~r63423-2 [hppa])
Development tools and library for lttoolbox
lutefisk (1.0.7+dfsg-4+b1 [ppc64], 1.0.7+dfsg-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
de novo interpretation of peptide CID spectra
macs (2.1.1.20160309-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sparc64, x32], 2.0.9.1-1 [sh4])
Model-based Analysis of ChIP-Seq on short reads sequencers
macsyfinder (1.0.2-1)
Detection of macromolecular systems in protein datasets.
maffilter (1.1.0-1+dfsg-2)
process genome alignment in the Multiple Alignment Format
maffilter-examples (1.1.0-1+dfsg-2)
process genome alignment in the Multiple Alignment Format (example data)
mafft (7.294-1)
Multiple alignment program for amino acid or nucleotide sequences
mapsembler2 (2.2.3+dfsg-2 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, ppc64el, s390x], 2.2.3+dfsg-1 [alpha, hppa, ppc64, x32], 2.1.6+dfsg-1 [m68k, sh4, sparc64])
bioinformatics targeted assembly software
maq (0.7.1-6+b1 [ppc64], 0.7.1-6 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-7+b1 [ppc64], 0.2.5-7 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
graphical read alignment viewer for short gene sequences
massxpert (3.6.0-1+b1 [ppc64], 3.6.0-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
linear polymer mass spectrometry software
massxpert-data (3.6.0-1)
linear polymer mass spectrometry software - arch-indep data
matlab-gdf (0.1.2-2) [contrib]
IO library for the GDF -- Matlab interface
maude (2.7-2)
high-performance logical framework
mauve-aligner (2.4.0+4734-3+b1 [ppc64], 2.4.0+4734-3 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
multiple genome alignment
mayavi2 (4.4.3-2.1+b1 [ppc64], 4.4.3-2.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32], 4.3.1-4.1 [sparc64], 4.0.0-3+b1 [sh4], 3.1.0-1 [m68k])
scientific visualization package for 2-D and 3-D data
mbt (3.2.10-5+b2 [ppc64], 3.2.10-5+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 3.2.10-5 [mips64el, powerpcspe])
memory-based tagger-generator and tagger
mbtserver (0.9-1+b1 [ppc64], 0.9-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Server extensions for the MBT tagger
meep (1.3-4+b1 [ppc64], 1.3-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 1.3-1 [sh4], 0.10-2+b1 [m68k])
software package for FDTD simulation
meep-lam4 (1.3-2+b1 [ppc64], 1.3-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64])
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpi (0.10-2+b1) [debports]
MIT Electromagnetic Equation Propagation, parallel (mpich) version
meep-mpi-default (1.3-3+b2 [ppc64, s390x], 1.3-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sh4, sparc64])
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpich2 (1.3-3+b1 [ppc64], 1.3-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 1.3-2+b1 [sh4])
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.3-3+b2 [ppc64], 1.3-3+b1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sparc64], 1.3-3 [s390x], 1.3-2+b1 [hppa])
software package for FDTD simulation, parallel (OpenMPI) version
melting (4.3.1+dfsg-2+b1 [ppc64], 4.3.1+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
compute the melting temperature of nucleic acid duplex
melting-gui (4.3.1+dfsg-2)
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.18.2-7+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, x32], 0.18.2-7 [sparc64], 0.18.1-3 [sh4], 0.12-1 [m68k])
map editor for OpenStreetMap.org
meryl (0~20150903+r2013-1+b1 [ppc64], 0~20150903+r2013-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64])
in- and out-of-core kmer counting and utilities
metastudent (2.0.1-1)
predictor of Gene Ontology terms from protein sequence
metastudent-data (2.0.0-3)
predictor of Gene Ontology terms from protein sequence - data files
metastudent-data-2 (1.0.0-2)
predictor of Gene Ontology terms from protein sequence - data #2
metview (4.6.5-2 [alpha, amd64, arm64, armel, armhf, kfreebsd-amd64, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 4.6.5-1 [hppa, i386, kfreebsd-i386], 4.6.1-5 [sparc64])
Interactive data visualization and analysis environment,
metview-data (4.6.5-2)
Data needed for the Metview data analysis environment
mgltools-bhtree (1.5.7~rc1+cvs.20140424-1) [non-free]
Bhtree library extension module
mgltools-cadd (1.5.7~rc1+cvs.20140424-1) [non-free]
Computer Aided Drug Discovery (CADD) Pipeline
mgltools-cmolkit (1.5.7~rc1+cvs.20140424-1) [non-free]
Python classes to interpret trajectories of Gromacs
mgltools-dejavu (1.5.7~rc1+cvs.20140424-1) [non-free]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.7~rc1+cvs.20140424-1) [non-free]
Python library for geometric analyses
mgltools-mglutil (1.5.7~rc1+cvs.20140424-1) [non-free]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.7~rc1+cvs.20140424-1) [non-free]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.7~rc1+cvs.20140424-1) [non-free]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.7~rc1+cvs.20140424-1) [non-free]
Opengltk Python extension
mgltools-pmv (1.5.7~rc1+cvs.20140424-2) [non-free]
Python-based Molecular Viewer
mgltools-pmv-test (1.5.7~rc1+cvs.20140424-2) [non-free]
Python-based Molecular Viewer (functionality tests)
mgltools-pyautodock (1.5.7~rc1+cvs.20140424-1) [non-free]
Python implementation of autodock
mgltools-pybabel (1.5.7~rc1+cvs.20140424-1) [non-free]
molecular structure file access and interpretation
mgltools-pyglf (1.5.7~rc1+cvs.20140424-1) [non-free]
GLF library Python extension to write text in OpenGL
mgltools-scenario2 (1.5.7~rc1+cvs.20140424-1) [non-free]
Python-based viewer of molecular structures
mgltools-sff (1.5.7~rc1+cvs.20140424-1) [non-free]
Simple Force Field for Python
mgltools-support (1.5.7~rc1+cvs.20140424-1) [non-free]
Update mechanism of MGLTools
mgltools-symserv (1.5.7~rc1+cvs.20140424-1) [non-free]
Symetry server
mgltools-utpackages (1.5.7~rc1+cvs.20140424-1) [non-free]
UT Austin software Python extensions
mgltools-viewerframework (1.5.7~rc1+cvs.20140424-1) [non-free]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.7~rc1+cvs.20140424+dfsg-1) [non-free]
Python-based Visual Programming Environment
mgltools-visionlibraries (1.5.7~rc1+cvs.20140424-1) [non-free]
Extensions for Python-based Visual Programming Environment
mgltools-volume (1.5.7~rc1+cvs.20140424-1) [non-free]
Volume rendering Python package
mgltools-webservices (1.5.7~rc1+cvs.20140424-1) [non-free]
webservices for components of autodocktools
mhap (1.6+dfsg-1)
locality-sensitive hashing to detect long-read overlaps
mia-tools (2.2.7-5)
Command line tools for gray scale image processing
mia-viewit (1.0.2-1+b1 [ppc64], 1.0.2-1 [amd64, arm64, armhf, i386, mips64el, mipsel, powerpc, ppc64el, x32])
Viewer program for 3D data sets created by using MIA
mialmpick (0.2.12-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 0.2.11-1+b1 [sh4], 0.2.11-1 [m68k])
Tools for landmark picking in 3D volume data sets
microbegps (1.0.0-2 [all], 1.0.0-1 [alpha, hppa, ppc64, x32])
explorative taxonomic profiling tool for metagenomic data
microbiomeutil (20101212+dfsg1-1)
Microbiome Analysis Utilities
microbiomeutil-data (20101212+dfsg1-1)
Reference 16S sequences and NAST-alignments used by microbiomeutil tools
microhope (4.1.1+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 4.1.1+dfsg-1 [hurd-i386])
hardware & software framework to learn microcontrollers
minc-tools (2.3.00+dfsg-1+b2 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, ppc64, ppc64el], 2.3.00+dfsg-1+b1 [hppa, m68k, mips, powerpc, s390x, sparc64, x32], 2.3.00+dfsg-1 [sh4])
MNI medical image format tools
minia (1.6906-1+b2 [ppc64, x32], 1.6906-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 1.6906-1 [mips64el, powerpcspe])
short-read biological sequence assembler
miniasm (0.2+dfsg-1+b1 [ppc64], 0.2+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
ultrafast de novo assembler for long noisy DNA sequencing reads
minimap (0.2-2+b1 [ppc64], 0.2-2 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4])
tool for approximate mapping of long biosequences such as DNA reads
minisat (1:2.2.1-5+b2 [ppc64, s390x, x32], 1:2.2.1-5+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, sh4, sparc64], 1:2.2.1-5 [mips64el, powerpcspe])
Fast and lightweight SAT solver
minisat+ (1.0-2+b1 [armhf, hurd-i386, ppc64], 1.0-2 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
solver for pseudo-Boolean constraints
minisat2 (1:2.2.1-5+b2 [ppc64, s390x, x32], 1:2.2.1-5+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, sh4, sparc64], 1:2.2.1-5 [mips64el, powerpcspe])
Transitional package for minisat
minisat2
virtual package provided by minisat
mipe (1.1-5)
Tools to store PCR-derived data
mira-assembler (4.9.6-1)
Whole Genome Shotgun and EST Sequence Assembler
mira-rfam-12s-rrna (4.9.6-1)
extract of RFAM 12 rRNA database
missfits (2.8.0-1+b1 [ppc64], 2.8.0-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Basic maintenance and packaging tasks on FITS files
mitools (2.0.1-0.2 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.0.1-0.1 [hppa], 1.8.8-2.1 [sparc64], 1.8.4-1 [sh4])
view, convert and perform basic maths with medical image datasets
mldemos (0.5.1-3+b3 [ppc64], 0.5.1-3+b2 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390x], 0.5.1-3+b1 [arm64, hppa, mipsel, ppc64el, sh4, sparc64, x32], 0.5.1-3 [m68k, mips64el])
Machine Learning Demos (MLDemos) with Visualization
mlpack-bin (2.0.1-1+b1 [ppc64], 2.0.1-1 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 2.0.0-1 [m68k], 1.0.12-5+b1 [alpha], 1.0.12-3 [sh4])
intuitive, fast, scalable C++ machine learning library (binaries)
mlv-smile (1.47-4+b1 [ppc64], 1.47-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Find statistically significant patterns in sequences
mmass (5.5.0-4)
Mass spectrometry tool for proteomics
mmass-modules (5.5.0-4+b1 [ppc64], 5.5.0-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Mass spectrometry tool for proteomics - extension modules
mobyle (1.5.5+dfsg-1)
Web portal that provides web forms for command-line software
mobyle-programs (5.1.2-1)
Program descriptions for the mobyle portal
mobyle-tutorials (1.5.0-2)
program tutorials for the mobyle portal
mobyle-utils (1.5.5+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sh4, x32], 1.5.1+dfsg-1 [sparc64])
binary tools used by Mobyle
molds (0.3.1-1+b2 [amd64, arm64, armhf, i386, powerpc, ppc64], 0.3.1-1+b1 [kfreebsd-amd64, kfreebsd-i386, ppc64el])
Semi-empirical electronic structure and molecular dynamics
mona (1.4-17-1+b1 [ppc64], 1.4-17-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
theorem prover based on automata
montage (4.0+dfsg-3+b2 [ppc64], 4.0+dfsg-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 4.0+dfsg-3 [powerpcspe])
Toolkit for assembling FITS images into mosaics
montage-gridtools (4.0+dfsg-3+b2 [ppc64], 4.0+dfsg-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 4.0+dfsg-3 [powerpcspe])
Create files to run montage on the grid
montecarlo-base (20061220+dfsg3-3)
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-3)
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-6+b1 [ppc64], 1.15-6 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Semi-empirical Quantum Chemistry Library (binaries)
morse-simulator (1.4-2+b1 [ppc64], 1.4-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Multi-OpenRobot Simulation Engine
morse-simulator-data (1.4-2)
Multi-OpenRobot Simulation Engine
mothur (1.37.3-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sparc64], 1.36.1-1 [sh4, x32], 1.24.1-1 [m68k])
sequence analysis suite for research on microbiota
mothur-mpi (1.37.3-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sparc64], 1.36.1-1 [sh4, x32])
mpi-enabled binary for mothur
mpb (1.5-2+b6 [ppc64], 1.5-2+b5 [s390x], 1.5-2+b3 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc], 1.5-2+b2 [arm64, hppa, ppc64el, sh4, sparc64, x32], 1.5-2+b1 [m68k, mips64el])
MIT Photonic-Bands
mpb-mpi (1.5-2+b6 [ppc64], 1.5-2+b5 [s390x], 1.5-2+b3 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc], 1.5-2+b2 [arm64, hppa, ppc64el, sh4, sparc64, x32], 1.5-2+b1 [m68k, mips64el])
MIT Photonic-Bands, parallel (mpich) version
mpb-scm (1.5-2)
MIT Photonic-Bands initialisation files
mpqc (2.3.1-16.1+b3 [s390x], 2.3.1-16.1+b2 [mips, mips64el, mipsel, ppc64], 2.3.1-16.1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, sh4, sparc64, x32], 2.3.1-16.1 [m68k, powerpcspe])
Massively Parallel Quantum Chemistry Program
mpqc-openmpi (2.3.1-16.1)
Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)
mpqc-support (2.3.1-16.1+b3 [s390x], 2.3.1-16.1+b2 [mips, mips64el, mipsel, ppc64], 2.3.1-16.1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, sh4, sparc64, x32], 2.3.1-16.1 [m68k, powerpcspe])
Massively Parallel Quantum Chemistry Program (support tools)
mpqc3 (0.0~git20160216-3+b1 [ppc64], 0.0~git20160216-3 [amd64, arm64, armel, armhf, i386, mips64el, mipsel, powerpc, ppc64el])
Massively Parallel Quantum Chemistry Program
mpqc3-data (0.0~git20160216-3)
Massively Parallel Quantum Chemistry Program (data files)
mrbayes (3.2.6+dfsg-1+b2 [ppc64, s390x], 3.2.6+dfsg-1+b1 [alpha, amd64, arm64, armel, armhf, i386, mips, mips64el, mipsel, powerpc, ppc64el, x32], 3.2.6+dfsg-1 [sh4], 3.1.2-2 [sparc64])
Bayesian Inference of Phylogeny
mrbayes-mpi (3.2.6+dfsg-1+b2 [ppc64, s390x], 3.2.6+dfsg-1+b1 [alpha, amd64, arm64, armel, armhf, i386, mips, mips64el, mipsel, powerpc, ppc64el, x32], 3.2.6+dfsg-1 [sh4], 3.1.2-2 [sparc64])
Bayesian Inference of Phylogeny - mpi version
mriconvert (1:2.0.8-3+b1 [ppc64], 1:2.0.8-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
medical image file conversion utility
mricron (0.20140804.1~dfsg.1-1)
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20140804.1~dfsg.1-1)
data files for MRIcron
mrpt-apps (1:1.3.2-1+b1 [alpha, amd64, armel, armhf, hppa, i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32], 1:1.3.2-1 [arm64, ppc64], 1:1.3.0-1.1 [hurd-i386, kfreebsd-amd64, kfreebsd-i386], 1:0.9.5svn2563-1 [sh4])
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-common (1:1.3.2-1)
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-libs (1:0.9.5svn2563-1) [debports]
Mobile Robot Programming Toolkit - All the libraries
mrs (6.0.5+dfsg-1+b2)
Information Retrieval System for Biomedical databanks
mrtrix (0.2.12-2+b1 [ppc64], 0.2.12-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 0.2.12-1 [x32], 0.2.11-1 [sh4])
diffusion-weighted MRI white matter tractography
mssstest (3.0-4) [non-free]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.23~dfsg-3+b2 [ppc64, x32], 3.23~dfsg-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 3.23~dfsg-3 [mips64el, powerpcspe])
Efficient sequence alignment of full genomes
murasaki (1.68.6-5+b2 [ppc64], 1.68.6-5+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, s390x, sh4, sparc64, x32], 1.68.6-5 [mips, mips64el, mipsel, powerpcspe])
homology detection tool across multiple large genomes
murasaki-common (1.68.6-5)
homology detection tool across multiple large genomes (common files)
murasaki-mpi (1.68.6-5+b2 [ppc64], 1.68.6-5+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, s390x, sh4, sparc64, x32], 1.68.6-5 [mips, mips64el, mipsel, powerpcspe])
homology detection tool across multiple large genomes (MPI-version)
muscle (1:3.8.31+dfsg-1+b1 [ppc64], 1:3.8.31+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Multiple alignment program of protein sequences
music-bin (1.0.7-1.2+b3 [ppc64], 1.0.7-1.2+b2 [alpha, amd64, armel, armhf, i386, mips, mips64el, mipsel, powerpc], 1.0.7-1.2+b1 [arm64, hppa, ppc64el], 1.0.7-1.2 [s390x, sparc64, x32])
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.2-1+b2 [ppc64, s390x, x32], 3.2.2-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, sh4, sparc64], 3.2.2-1 [mips64el, powerpcspe])
multiple structural alignment of proteins
mustang-testdata (3.2.2-1)
multiple structural alignment of proteins, test data
nanopolish (0.4.0-1)
consensus caller for nanopore sequencing data
nast-ier (20101212+dfsg1-1+b1 [ppc64], 20101212+dfsg1-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 20101212+dfsg-1 [sh4, x32])
NAST-based DNA alignment tool
nastran (0.1.95-1) [non-free]
NASA Structural Analysis System
nautic (1.5-1.1+b2 [ppc64], 1.5-1.1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x, sh4, x32], 1.5-1.1 [mips64el, sparc64], 1.5-1 [m68k])
computation of observer position in astro-navigation
ncbi-blast+ (2.3.0-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sh4, sparc64], 2.2.31-4 [x32], 2.2.29-3 [hurd-i386])
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.3.0-1)
NCBI Blast legacy call script
ncbi-epcr (2.3.12-1-3+b1 [ppc64], 2.3.12-1-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20120620-10)
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-seg (0.0.20000620-3+b1 [ppc64], 0.0.20000620-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin (6.1.20120620-10+b2 [ppc64], 6.1.20120620-10+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 6.1.20120620-10 [m68k], 6.1.20120620-8 [sh4, x32])
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20120620-10+b2 [ppc64], 6.1.20120620-10+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 6.1.20120620-10 [m68k], 6.1.20120620-8 [sh4, x32])
NCBI libraries for biology applications (X-based utilities)
ncl-ncarg (6.3.0-8+b2 [amd64], 6.3.0-8+b1 [alpha, arm64, armel, armhf, i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64])
NCAR Command Language and NCAR graphics
ncl-tools (2.1.18+dfsg-2+b1 [ppc64], 2.1.18+dfsg-2 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4])
tools to deal with NEXUS files
nco (4.6.0-1)
Command-line operators to analyze netCDF files
ncoils (2002-4+b1 [ppc64], 2002-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
coiled coil secondary structure prediction
ncview (2.1.7+ds-1+b2 [ppc64], 2.1.7+ds-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
X11 visual browser for NetCDF format files
neat (2.0-1)
Nebular Empirical Analysis Tool
neobio (0.0.20030929-2)
computes alignments of amino acid and nucleotide sequences
netcdf-bin (1:4.4.0-2+b1 [ppc64], 1:4.4.0-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Programs for reading and writing NetCDF files
neurodebian (0.37.4)
neuroscience-oriented distribution - repository configuration
neurodebian-archive-keyring (0.37.4)
neuroscience-oriented distribution - GnuPG archive keys
neurodebian-desktop (0.37.4)
neuroscience-oriented distribution - desktop integration
neurodebian-dev (0.37.4)
neuroscience-oriented distribution - development tools
neurodebian-popularity-contest (0.37.4)
neuroscience-oriented distribution - popcon integration
nexus-tools (4.3.2-svn1921-3+b1 [ppc64], 4.3.2-svn1921-3 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 4.2.1-svn1614-1+b1 [sh4])
NeXus scientific data file format - applications
nifti2dicom (0.4.11-1 [amd64, i386], 0.4.9-1 [alpha, hppa], 0.4.6-2 [ppc64], 0.4.6-1 [x32])
convert 3D medical images to DICOM 2D series
nifti2dicom-data (0.4.11-1)
data files for nifti2dicom
njplot (2.4-3+b1 [ppc64], 2.4-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 2.4-2+b1 [x32], 2.4-2 [sh4])
phylogenetic tree drawing program
node-mgrs (0.0.3-2)
Utility for converting between WGS84 lat/lng and MGRS coordinates
node-proj4 (2.3.14+ds-1)
Node.js module to transform point coordinates systems
node-sphericalmercator (1.0.1-2)
Spherical Mercator projection support for NodeJS
node-srs (0.4.8+dfsg-2+b4 [ppc64], 0.4.8+dfsg-2+b3 [amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, powerpc, ppc64el, s390x], 0.4.8+dfsg-2+b1 [mipsel])
spatial reference library for Node.js
norsnet (1.0.17-2)
tool to identify unstructured loops in proteins
norsp (1.0.6-2)
predictor of non-regular secondary structure
numdiff (5.8.1-2+b1 [ppc64], 5.8.1-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Compare similar files with numeric fields
nwchem (6.6+r27746-2 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, x32], 6.5+r26243-6+b1 [hppa], 6.5+r26243-6 [ppc64, s390x], 6.3+r1-1 [sparc64], 6.1-6 [alpha])
High-performance computational chemistry software
nwchem-data (6.6+r27746-2)
High-performance computational chemistry software (data files)
oar-common (2.5.7-2)
OAR batch scheduler common package
oar-node (2.5.7-2)
OAR batch scheduler node package
oar-server (2.5.7-2)
OAR batch scheduler server package
oar-server-mysql (2.5.7-2)
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.7-2)
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.7-2)
OAR batch scheduler user package
oar-user-mysql (2.5.7-2)
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.7-2)
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.7-2)
OAR batch scheduler visualization tool package
obdgpslogger (0.16-1.2+b2 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, x32], 0.16-1.2+b1 [arm64, hppa, m68k, mips64el, ppc64el, sh4, sparc64])
suite of tools to log OBDII and GPS data
objcryst-fox (1.9.6.0-2.1+b2 [ppc64], 1.9.6.0-2.1+b1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x, sh4, x32], 1.9.6.0-2.1 [hppa, mips64el, sparc64], 1.9.6.0-2 [m68k])
Free Objects for Xtallography
oce-draw (0.17.1-2)
OpenCASCADE Community Edition CAE platform shared library
octave-bart (0.3.00-1)
Octave bindings for BART
octave-biosig (1.3.0-2.1+b4 [hppa, ppc64], 1.3.0-2.1+b3 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x], 1.3.0-2.1+b2 [alpha, mips64el], 1.3.0-2.1 [sparc64], 1.3.0-2+b1 [x32], 1.3.0-2 [sh4])
Octave bindings for BioSig library
octave-gdf (0.1.2-2+b6 [ppc64], 0.1.2-2+b5 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x], 0.1.2-2+b4 [alpha], 0.1.2-2+b3 [ppc64el], 0.1.2-2+b2 [arm64, sh4], 0.1.2-2+b1 [hppa, sparc64], 0.1.2-2 [mips64el, x32])
IO library for the GDF -- Octave interface
octave-lhapdf (5.9.1-4+b1 [ppc64], 5.9.1-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 5.9.1-3 [x32])
Octave Bindings for LHAPDF
octave-psychtoolbox-3 (3.0.12.20160414.dfsg1-1 [alpha, amd64, armel, armhf, hppa, i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 3.0.11.20131017.dfsg1-3 [sh4, sparc64], 3.0.9+svn2579.dfsg1-1 [x32])
toolbox for vision research -- Octave bindings
octomap-tools (1.6.8+dfsg-2.1+b1 [ppc64], 1.6.8+dfsg-2.1 [alpha, amd64, arm64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.6.8+dfsg-1 [sh4])
Tools for 3D occupancy grid mapping
octovis (1.6.8+dfsg-2.1+b1 [ppc64], 1.6.8+dfsg-2.1 [alpha, amd64, arm64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.6.8+dfsg-1 [sh4])
Visualization tool for OctoMap
odil (0.6.0-1)
C++11 library for the DICOM standard (application)
odin (2.0.1-0.2 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 2.0.1-0.1 [hppa], 1.8.8-2.1 [sparc64], 1.8.4-1 [sh4])
develop, simulate and run magnetic resonance sequences
ogdi-bin (3.2.0~beta2-9)
Open Geographic Datastore Interface Library -- utilities
openbabel (2.3.2+dfsg-2.2+b2 [ppc64], 2.3.2+dfsg-2.2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 2.3.2+dfsg-2.2 [sh4], 2.3.2+dfsg-1.1 [m68k])
Chemical toolbox utilities (cli)
openbabel-gui (2.3.2+dfsg-2.2+b2 [ppc64], 2.3.2+dfsg-2.2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 2.3.2+dfsg-2.2 [sh4], 2.3.2+dfsg-1.1 [m68k])
Chemical toolbox utilities (graphical user interface)
opencaster (3.2.2+dfsg-1.1+b1 [ppc64], 3.2.2+dfsg-1.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
MPEG2 transport stream data generator and packet manipulator
openmeeg-tools (2.3.0~20160502-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el], 2.0.0.dfsg-5.2 [sparc64], 2.0.0.dfsg-5.1 [hurd-i386, ppc64, s390x])
openmeeg library -- command line tools
openmolar (0.6.2-2)
dental practice management software
openms (2.0.0-4)
package for LC/MS data management and analysis
openms-common (2.0.0-4)
package for LC/MS data management and analysis - shared data
openmx (3.7.6-1+b4 [ppc64, s390x], 3.7.6-1+b2 [mips, mipsel], 3.7.6-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips64el, powerpc, ppc64el, sh4, sparc64, x32], 3.7.6-1 [m68k, powerpcspe])
package for nano-scale material simulations
openmx-data (3.7.6-1)
package for nano-scale material simulations (data)
openrocket (15.03)
Model Rocket Simulator
opensesame (0.27.4-2.1)
graphical experiment builder for the social sciences
openturns-examples (1.5-7+b3 [ppc64], 1.5-7+b2 [amd64, arm64, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, s390x, sh4, sparc64, x32], 1.5-7+b1 [alpha, mips64el], 1.5-7 [armel])
examples of OpenTURNS functionalities
openturns-validation (1.5-7)
validation files for OpenTURNS
openuniverse (1.0beta3.1+dfsg-5)
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-5)
3D Universe Simulator data files
opj2dat (20080225-2.1) [debports]
OriginLab Origin project files to data files converter
optgeo (2.23-1 [amd64, arm64, armhf, i386, powerpc], 2.21-1 [ppc64])
simulator for geometrical optics
opticalraytracer (3.2-1.1)
Virtual lens design workshop
origami (1.2.7+really0.7.4-1)
command-line management tool for Folding @ Home clients
orthanc (1.0.0+dfsg-4)
Lightweight, RESTful DICOM server for medical imaging
orthanc-dicomweb (0.2+dfsg-1+b2 [mips64el], 0.2+dfsg-1+b1 [amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x, sparc64], 0.2+dfsg-1 [alpha])
Plugin to extend Orthanc with support of WADO and DICOMweb
orthanc-imagej (1.1+dfsg-1)
ImageJ plugin to import images from Orthanc
orthanc-postgresql (2.0-1)
Plugins to use PostgreSQL as a database back-end to Orthanc
orthanc-webviewer (2.1-1+b2 [mips64el], 2.1-1+b1 [amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x, sparc64], 2.1-1 [alpha], 1.2-1 [hppa, x32])
Web viewer of medical images for Orthanc
ossim-core (1.8.20.3+ds-3)
OSSIM core utilities
otb-bin (5.4.0+dfsg-1)
ORFEO Toolbox command line applications
otb-bin-qt (5.4.0+dfsg-1)
ORFEO Toolbox graphical user interface applications
otb-testdriver (5.4.0+dfsg-1)
ORFEO Toolbox library - OTBTestDriver
otf-trace (1.12.5+dfsg-1+b4 [ppc64, s390x], 1.12.5+dfsg-1+b2 [alpha, amd64, hppa, sh4, sparc64, x32], 1.12.5+dfsg-1+b1 [arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el], 1.12.5+dfsg-1 [powerpcspe])
Open Trace Format support library - development files
ovito (2.3.3+dfsg1-2+b2 [alpha, amd64, arm64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 2.3.3+dfsg1-2+b1 [ppc64], 0.9.5-3 [sh4], 0.9.5-2 [x32])
visualization and analysis tool for atomistic simulation data
p4vasp (0.3.29+dfsg-3+b1 [ppc64], 0.3.29+dfsg-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, sh4, x32])
visualization suite for the Vienna Ab-initio Simulation Package (VASP)
paje.app (1.98-1+b2 [amd64, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, ppc64, s390x], 1.98-1+b1 [alpha, armel, armhf, mips, mipsel, powerpc, x32], 1.98-1 [arm64, hppa, m68k, mips64el, ppc64el, sh4, sparc64])
generic visualization tool (Gantt chart and more)
paml (4.8+dfsg-1) [non-free]
Phylogenetic Analysis by Maximum Likelihood (PAML)
paraclu (9-1+b2 [ppc64, x32], 9-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 9-1 [mips64el, powerpcspe])
Parametric clustering of genomic and transcriptomic features
parafly (0.0.2013.01.21-3 [amd64, arm64, ppc64el, s390x], 0.0.2013.01.21-1 [kfreebsd-amd64, ppc64, sparc64])
parallel command processing using OpenMP
paraview (5.0.1+dfsg1-5.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, x32], 4.1.0+dfsg+1-3 [sparc64], 3.14.1-1 [sh4])
Parallel Visualization Application
parsinsert (1.04-2)
Parsimonious Insertion of unclassified sequences into phylogenetic trees
paw (1:2.14.04.dfsg.2-9+b2 [ppc64], 1:2.14.04.dfsg.2-9+b1 [alpha, amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1:2.14.04.dfsg.2-9 [arm64, hppa, mips64el, powerpcspe, ppc64el, sh4, sparc64, x32], 1:2.14.04.dfsg.2-1 [m68k])
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-9+b2 [ppc64], 1:2.14.04.dfsg.2-9+b1 [alpha, amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x], 1:2.14.04.dfsg.2-9 [arm64, hppa, mips64el, powerpcspe, ppc64el, sh4, sparc64, x32], 1:2.14.04.dfsg.2-1 [m68k])
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-9)
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-9)
Physics Analysis Workstation examples and tests
pbbarcode (0.8.0-2)
annotate PacBio sequencing reads with barcode information
pbdagcon (0~20151114+git1d12e13+ds-2)
sequence consensus using directed acyclic graphs
pbgenomicconsensus (2.0.0+20151210-1)
Pacific Biosciences variant and consensus caller
pbh5tools (0.8.0+dfsg-5)
tools for manipulating Pacific Biosciences HDF5 files
pbhoney (15.8.24+dfsg-1)
genomic structural variation discovery
pbjelly (15.8.24+dfsg-1)
genome assembly upgrading tool
pbsim (1.0.3-2+b1 [ppc64], 1.0.3-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
simulator for PacBio sequencing reads
pdb2pqr (2.1.1+dfsg-1)
Preparation of protein structures for electrostatics calculations
pegasus-wms (4.4.0+dfsg-5+b1 [ppc64], 4.4.0+dfsg-5 [alpha, amd64, arm64, armel, armhf, i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Scientific workflow management system for HTCondor
perlprimer (1.1.21-2)
Graphical design of primers for PCR
perm (0.4.0-1+b2 [ppc64, x32], 0.4.0-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 0.4.0-1 [mips64el, powerpcspe])
efficient mapping of short reads with periodic spaced seeds
phybin (0.3-1)
binning/clustering newick trees by topology
phylip (1:3.696+dfsg-2+b1 [ppc64], 1:3.696+dfsg-2 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
package of programs for inferring phylogenies
phyml (3:3.2.0+dfsg-2+b1 [ppc64], 3:3.2.0+dfsg-2 [alpha, amd64, arm64, armel, armhf, i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, x32], 2:20120412-2 [hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, m68k, sparc64])
Phylogenetic estimation using Maximum Likelihood
phyutility (2.7.3-1+b1 [ppc64], 2.7.3-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
simple analyses or modifications on both phylogenetic trees and data matrices
picard-tools (2.1.1+dfsg-1)
Command line tools to manipulate SAM and BAM files
picosat (960-1+b1 [ppc64], 960-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
SAT solver with proof and core support
piler (0~20140707-1+b1 [ppc64], 0~20140707-1 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4])
genomic repeat analysis
pktools (2.6.7-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 2.5.3-1 [sh4])
GDAL add-on tools to perform useful raster processing
placnet (1.03-2)
Plasmid Constellation Network project
planets (0.1.13-16)
Gravitation simulation of planetary bodies
plast (2.3.1+dfsg-3)
Parallel Local Sequence Alignment Search Tool
plast-example (2.3.1+dfsg-3)
Parallel Local Sequence Alignment Search Tool (example data)
plastimatch (1.6.2+dfsg-3 [amd64, i386], 1.6.2+dfsg-1 [hppa, sparc64, x32], 1.6.0+dfsg-1 [alpha], 1.5.15+dfsg-1 [ppc64])
medical image reconstruction and registration
plink (1.07-6+b2 [ppc64, x32], 1.07-6+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 1.07-6 [mips64el, powerpcspe])
whole-genome association analysis toolset
plink1.9 (1.90~b3.36-160416-1 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mipsel], 1.90~b3b-150117-1+b1 [hppa], 1.90~b3b-150117-1 [sh4])
whole-genome association analysis toolset
pnetcdf-bin (1.7.0~pre1-1+b1 [ppc64], 1.7.0~pre1-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, x32])
Programs for reading and writing parallel NetCDF files
poa (2.0+20060928-4+b1 [ppc64], 2.0+20060928-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106-2.1+b1 [hurd-i386, ppc64], 1.2.33+svn0120106-2.1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
population genetic software
poretools (0.5.1-1)
toolkit for nanopore nucleotide sequencing data
pp-popularity-contest (1.0.6-2+b3 [ppc64], 1.0.6-2+b2 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, x32], 1.0.6-2+b1 [arm64, hppa, ppc64el, sh4, sparc64], 1.0.6-2 [m68k, mips64el, powerpcspe])
PredictProtein popularity contest
pprepair (0.0~20160321-87ffae5-1)
planar partition repair tool
praat (6.0.15-1+b1 [ppc64], 6.0.15-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
program for speech analysis and synthesis
prank (0.0.150803-2)
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
predictnls (1.0.20-2)
prediction and analysis of protein nuclear localization signals
predictprotein (1.1.07-1)
suite of protein sequence analysis tools
prepair (0.7-6)
polygon repair tool
prepair-data (0.7-6)
polygon repair tool -- example data
prime-phylo (1.0.11-2+b3 [ppc64], 1.0.11-2+b2 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sparc64], 1.0.11-2 [powerpcspe, s390x])
bayesian estimation of gene trees taking the species tree into account
primer3 (2.3.7-1+b1 [ppc64], 2.3.7-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Tool to design flanking oligo nucleotides for DNA amplification
proalign (0.603-2+b1 [ppc64], 0.603-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 0.603-1 [m68k])
Probabilistic multiple alignment program
probabel (0.4.5-3 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips64el, mipsel, powerpcspe, ppc64el, sh4, x32], 0.4.5-2 [sparc64])
Toolset for Genome-Wide Association Analysis
probabel-examples (0.4.5-3)
Example files for ProbABEL
probalign (1.4-4+b1 [ppc64], 1.4-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-10+b1 [ppc64], 1.12-10 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-10+b1 [ppc64], 1.12-10 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Extra programs from the probcons package
proda (1.0-10)
multiple alignment of protein sequences
prodigal (1:2.6.3-1+b1 [ppc64], 1:2.6.3-1 [alpha, amd64, arm64, armel, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Microbial (bacterial and archaeal) gene finding program
profbval (1.0.22-2)
predictor of flexible/rigid protein residues from sequence
profisis (1.0.11-2)
prediction of protein-protein interaction sites from sequence
profnet-bval (1.0.22-2+b1 [ppc64], 1.0.22-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
neural network architecture for profbval
profnet-chop (1.0.22-2+b1 [ppc64], 1.0.22-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
neural network architecture for profchop
profnet-con (1.0.22-2+b1 [ppc64], 1.0.22-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
neural network architecture for profcon
profnet-isis (1.0.22-2+b1 [ppc64], 1.0.22-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
neural network architecture for profisis
profnet-md (1.0.22-2+b1 [ppc64], 1.0.22-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
neural network architecture for metadisorder
profnet-norsnet (1.0.22-2+b1 [ppc64], 1.0.22-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
neural network architecture for norsnet
profnet-prof (1.0.22-2+b1 [ppc64], 1.0.22-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
neural network architecture for profacc
profnet-snapfun (1.0.22-2+b1 [ppc64], 1.0.22-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
neural network architecture for snapfun
profphd (1.0.42-1)
secondary structure and solvent accessibility predictor
profphd-net (1.0.22-2+b1 [ppc64], 1.0.22-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
neural network architecture for profphd
profphd-utils (1.0.10-2+b1 [ppc64], 1.0.10-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
profphd helper utilities convert_seq and filter_hssp
proftmb (1.1.12-3+b1 [ppc64], 1.1.12-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
per-residue prediction of bacterial transmembrane beta barrels
progressivemauve (1.2.0+4713-2+b1 [ppc64], 1.2.0+4713-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
multiple genome alignment algorithms
proj-bin (4.9.2-2+b1 [ppc64], 4.9.2-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 4.9.2-1 [m68k])
Cartographic projection library (tools)
proj-rdnap (2008-5) [non-free]
RDNAP grid correction files for PROJ.4
prooftree (0.12-2+b1 [ppc64], 0.12-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
proof-tree visualization for Proof General
proteinortho (5.13+dfsg-1)
Detection of (Co-)orthologs in large-scale protein analysis
prottest (3.4.2+dfsg-2)
selection of best-fit models of protein evolution
psfex (3.17.1+dfsg-3+b2 [ppc64], 3.17.1+dfsg-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x], 3.17.1+dfsg-3 [sparc64])
Point Spread Function model extractor
psi3 (3.4.0-6+b1 [ppc64], 3.4.0-6 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 3.4.0-5 [sh4])
Quantum Chemical Program Suite
psi4 (1:0.3-5+b1 [ppc64], 1:0.3-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 4.0~beta5+dfsg-2 [sh4])
Quantum Chemical Program Suite
psi4-data (1:0.3-5)
Quantum Chemical Program Suite (data files)
psychopy (1.83.04.dfsg-2)
environment for creating psychology stimuli in Python
psychtoolbox-3-common (3.0.12.20160414.dfsg1-1)
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (3.0.12.20160414.dfsg1-1 [alpha, amd64, armel, armhf, hppa, i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x], 3.0.11.20131017.dfsg1-3 [sh4, sparc64], 3.0.9+svn2579.dfsg1-1 [x32])
toolbox for vision research -- arch-specific parts
pyfai (0.11.0+dfsg-5 [all], 0.10.2-1 [m68k, sh4], 0.3.5-1 [arm64, sparc64])
Fast Azimuthal Integration scripts
pyformex (0.8.6-4)
program to create 3D geometry from Python scripts.
pyformex-lib (0.8.6-4+b1 [hurd-i386, ppc64], 0.8.6-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
program to create 3D geometry from Python scripts.
pyfr (1.4.0-2)
flux reconstruction in Python
pymca (4.7.4+dfsg-1+b2 [ppc64], 4.7.4+dfsg-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Python applications and toolkit for X-ray fluorescence analysis
pymca-data (4.7.4+dfsg-1)
Architecture independent data files for PyMca
pymol (1.7.2.1-2.2+b2 [ppc64], 1.7.2.1-2.2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 1.7.2.1-2.2 [powerpcspe])
Molecular Graphics System
pythia8-data (8.1.86-1.2)
PYTHIA8 data files
python-expyriment (0.7.0+git34-g55a4e7e-3.1)
Python library for cognitive and neuroscientific experiments
python-pynlpl (0.7.7.1-2)
PyNLPl is a library for Natural Language Processing.
python-pyzolib (0.3.4-1)
Utilities for the Pyzo environment (Python 2)
python-shogun (3.2.0-5.2 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, s390x], 3.2.0-5 [ppc64])
Large Scale Machine Learning Toolbox
python3-pynlpl (0.7.7.1-2)
PyNLPl is a library for Natural Language Processing.
python3-pyzolib (0.3.4-1)
Utilities for the Pyzo environment (Python 3)
pyzo (4.1-2)
interactive editor for scientific Python
qfits-tools (6.2.0-8+b1 [ppc64, s390x], 6.2.0-8 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, sh4, sparc64, x32])
FITS manipulation tools
qgis (2.14.3+dfsg-2)
Geographic Information System (GIS)
qgis-api-doc (2.14.3+dfsg-2)
QGIS API documentation
qgis-common (2.14.3+dfsg-2)
QGIS - architecture-independent data
qgis-mapserver (2.2.0-1) [debports]
QGIS mapserver
qgis-mapserver
virtual package provided by qgis-server
qgis-plugin-globe (2.14.3+dfsg-2)
OSG globe plugin for QGIS
qgis-plugin-globe-common (2.14.3+dfsg-2)
OSG globe plugin for QGIS - architecture-independent data
qgis-plugin-grass (2.14.3+dfsg-2)
GRASS plugin for QGIS
qgis-plugin-grass-common (2.14.3+dfsg-2)
GRASS plugin for QGIS - architecture-independent data
qgis-provider-grass (2.14.3+dfsg-2)
GRASS provider for QGIS
qgis-providers (2.14.3+dfsg-2)
collection of data providers to QGIS
qgis-providers-common (2.14.3+dfsg-2)
collection of data providers to QGIS - architecture-independent files
qgis-server (2.14.3+dfsg-2)
QGIS server providing various OGC services
qgis-sqlanywhere (2.2.0-1) [debports]
QGIS sql anywhere plugin and provider
qiime (1.9.1+dfsg-1+b1 [ppc64], 1.9.1+dfsg-1 [alpha, amd64, arm64, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32])
Quantitative Insights Into Microbial Ecology
qiime-data (1.9.1+dfsg-1)
Quantitative Insights Into Microbial Ecology (supporting data)
qmapshack (1.6.1-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, x32], 1.6.0-1+b1 [sparc64])
GPS mapping (GeoTiff and vector) and GPSr management
qmc (0.94-3+b3 [hppa, hurd-i386], 0.94-3+b2 [alpha, i386, m68k, mips, mipsel, powerpc, ppc64, x32], 0.94-3+b1 [amd64, arm64, armel, armhf, kfreebsd-amd64, kfreebsd-i386, ppc64el, s390x, sh4, sparc64], 0.94-3 [mips64el, powerpcspe])
Quine McClusky Simplification Tool
qnifti2dicom (0.4.11-1 [amd64, i386], 0.4.9-1 [alpha, hppa], 0.4.6-2 [ppc64], 0.4.6-1 [x32])
convert 3D medical images to DICOM 2D series (gui)
qrisk2 (0.1.20150729-1+b1 [ppc64], 0.1.20150729-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32], 0.0.r31-1 [hurd-i386, kfreebsd-amd64, kfreebsd-i386])
cardiovascular disease risk calculator
qthid-fcd-controller (4.1-3+b1 [ppc64], 4.1-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Funcube Dongle controller
quantum-espresso (5.1+dfsg-4 [alpha, amd64, arm64, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 5.1+dfsg-3 [armel])
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
quantum-espresso-data (5.1+dfsg-4)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
qutemol (0.4.1~cvs20081111-5+b2 [ppc64], 0.4.1~cvs20081111-5+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 0.4.1~cvs20081111-5 [sh4], 0.4.1~cvs20081111-3 [m68k])
interactive visualization of macromolecules
raccoon (1.0b-2) [contrib]
preparation of in silico drug screening projects
rasmol (2.7.5.2-2)
Visualize biological macromolecules
raster3d (3.0-3-2+b1 [ppc64], 3.0-3-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
tools for generating images of proteins or other molecules
rate4site (3.0.0-2+b1 [ppc64], 3.0.0-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
detector of conserved amino-acid sites
rawtran (0.3.8-2)
RAW photo to FITS converter
raxml (8.2.8+dfsg-1)
Randomized Axelerated Maximum Likelihood of phylogenetic trees
ray (2.3.1-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sh4, sparc64, x32], 2.3.1-2 [m68k])
de novo genome assemblies of next-gen sequencing data
ray-extra (2.3.1-4)
Scripts and XSL sheets for post-processing for ray
rdkit-data (201503-3)
Collection of cheminformatics and machine-learning software (data files)
rdp-classifier (2.10.2-1)
extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
readseq (1-11+b1 [ppc64], 1-11 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Conversion between sequence formats
reapr (1.0.18+dfsg-2)
universal tool for genome assembly evaluation
relion-bin (1.4+dfsg-1+b1)
toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+gui (1.4+dfsg-1+b1)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi (1.4+dfsg-1+b1)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
relion-bin+mpi+gui (1.4+dfsg-1+b1)
parallel toolkit for 3D reconstructions in cryo-electron microscopy
repeatmasker-recon (1.08-3)
finds repeat families from biological sequences
reprof (1.0.1-2)
protein secondary structure and accessibility predictor
rivet (1.8.3-1.3)
Robust Independent Validation of Experiment and Theory
rivet-plugins (1.8.3-1.3+b1 [ppc64], 1.8.3-1.3 [alpha, amd64, arm64, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 1.8.3-1.1 [armel, armhf])
Analysis plugins of Rivet
rivet-plugins-data (1.8.3-1.3)
Data files of Rivet analysis plugins
rivet-plugins-dev (1.8.3-1.3)
Template generator of Rivet analysis plugin
rivet-root-converter (1.8.3-1.3)
Rivet and ROOT file format converter
rna-star (2.5.2a+dfsg-2 [amd64, arm64, mips64el, ppc64el, x32], 2.4.2a+dfsg-1+b1 [armel, i386, m68k], 2.4.2a+dfsg-1 [sh4], 2.4.0k-1 [mipsel])
ultrafast universal RNA-seq aligner
rnahybrid (2.1.2-1+b1 [ppc64], 2.1.2-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Fast and effective prediction of microRNA/target duplexes
roary (3.6.2+dfsg-1)
high speed stand alone pan genome pipeline
root-plugin-geom-gdml (5.34.19+dfsg-1.2)
GDML import/export module for ROOT geometries
root-plugin-geom-geombuilder (5.34.19+dfsg-1.2)
Geometry builder plugin for ROOT
root-plugin-geom-geompainter (5.34.19+dfsg-1.2)
Geometry painter plugin for ROOT
root-plugin-graf2d-asimage (5.34.19+dfsg-1.2)
AfterImage plugin for ROOT
root-plugin-graf2d-qt (5.34.19+dfsg-1.2)
Graf2d Qt plugin for ROOT
root-plugin-graf2d-x11 (5.34.19+dfsg-1.2)
X window system plugin for ROOT
root-plugin-graf3d-x3d (5.34.19+dfsg-1.2)
X 3D plugin for ROOT
root-plugin-gui-fitpanel (5.34.19+dfsg-1.2)
GUI element for fits plugin for ROOT
root-plugin-gui-guibuilder (5.34.19+dfsg-1.2)
GUI editor plug-in for ROOT
root-plugin-gui-qt (5.34.19+dfsg-1.2)
Qt plugin for ROOT
root-plugin-gui-sessionviewer (5.34.19+dfsg-1.2)
GUI to browse an interactive PROOF session
root-plugin-hist-hbook (5.34.19+dfsg-1.2)
Hbook plugin for ROOT
root-plugin-hist-histpainter (5.34.19+dfsg-1.2)
Histogram painter plugin for ROOT
root-plugin-hist-spectrumpainter (5.34.19+dfsg-1.2)
Spectrum painter plugin for ROOT
root-plugin-io-sql (5.34.19+dfsg-1.2)
SQL plugin for ROOT
root-plugin-io-xml (5.34.19+dfsg-1.2)
XML reader plugin for ROOT
root-plugin-math-fftw3 (5.34.19+dfsg-1.2)
FFTw plugin for ROOT
root-plugin-math-fumili (5.34.19+dfsg-1.2)
Fumili plugin for ROOT
root-plugin-math-minuit2 (5.34.19+dfsg-1.2)
Minuit version 2 plugin for ROOT
root-plugin-montecarlo-pythia8 (5.34.19+dfsg-1.2)
Pythia version 8 plugin for ROOT
root-plugin-net-globus (5.34.19+dfsg-1.2)
Globus plugin for ROOT
root-plugin-net-krb5 (5.34.19+dfsg-1.2)
Kerberos (version 5) plugin for ROOT
root-plugin-sql-mysql (5.34.19+dfsg-1.2)
MySQL client plugin for ROOT
root-plugin-sql-odbc (5.34.19+dfsg-1.2)
ODBC plugin for ROOT
root-plugin-sql-pgsql (5.34.19+dfsg-1.2)
PostgreSQL client plugin for ROOT
root-plugin-tree-treeviewer (5.34.19+dfsg-1.2)
GUI to browse a ROOT tree
root-system (5.34.19+dfsg-1.2)
metapackage to install all ROOT packages
root-system-bin (5.34.19+dfsg-1.2)
Numerical data analysis framework - general applications
root-system-common (5.34.19+dfsg-1.2)
Common files for ROOT
root-system-proofd (5.34.19+dfsg-1.2)
Parallel ROOt Facility - distributed, parallel computing
root-system-rootd (5.34.19+dfsg-1.2)
ROOT remote file server
rsem (1.2.30+dfsg-1 [alpha, amd64, arm64, hppa, kfreebsd-amd64, ppc64, ppc64el, sh4, sparc64, x32], 1.2.26+dfsg-2 [m68k, powerpcspe])
RNA-Seq by Expectation-Maximization
rtax (0.984-3)
Classification of sequence reads of 16S ribosomal RNA gene
saga (2.2.7+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 2.0.8+dfsg-4 [sh4])
System for Automated Geoscientific Analyses
saga-common (2.2.7+dfsg-2)
SAGA GIS architecture independent files
saint (2.5.0+dfsg-2+b1 [ppc64], 2.5.0+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Significance Analysis of INTeractome
salmon (0.4.2+ds1-3)
wicked-fast transcript quantification from RNA-seq data
salome-kernel (6.5.0-8.1) [debports]
Numerical simulation pre- and post-processor
samtools (1.3.1-2 [amd64, arm64, armel, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips64el, mipsel, powerpcspe, ppc64el, sh4, x32], 0.1.19-1 [alpha, hppa, ppc64])
processing sequence alignments in SAM and BAM formats
samtools-test (1.3.1-2)
test files for the samtools package
saods9 (7.4.1+repack-1 [all], 7.3.2+repack-1 [arm64, x32])
Image display tool for astronomy
saods9-tclpackages (7.4.1+repack-1+b1 [ppc64], 7.4.1+repack-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64], 7.4+repack-1 [hurd-i386])
Tcl/Tk packages provided with DS9
sat4j (2.3.3-1)
Efficient library of SAT solvers in Java
savi (1.4.9-1+b1 [ppc64], 1.4.9-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
satellite constellation visualisation
sbmltoolbox (4.1.0-3)
libsbml toolbox for octave and matlab
scamp (2.0.4-2+b2 [ppc64], 2.0.4-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x], 2.0.4-2 [sparc64])
Compute astrometric and photometric solutions
science-astronomy (1.5)
Debian Science Astronomy transitional package
science-astronomy-dev (1.5)
Debian Science Astronomy-dev transitional package
science-biology (1.5)
Debian Science Biology packages
science-chemistry (1.5)
Debian Science Chemistry packages
science-config (1.5)
Debian Science Project config package
science-dataacquisition (1.5)
Debian Science data acquisition packages
science-dataacquisition-dev (1.5)
Debian Science data acquisition development packages
science-distributedcomputing (1.5)
Debian Science Distributed Computing packages
science-economics (1.5)
Debian Science Economics packages
science-electronics (1.5)
Debian Science Electronics packages
science-electrophysiology (1.5)
Debian Science packages for Electrophysiology
science-engineering (1.5)
Debian Science Engineering packages
science-engineering-dev (1.5)
Debian Science Engineering-dev packages
science-financial (1.5)
Debian Science financial engineering and computational finance
science-geography (1.5)
Debian Science Geography packages
science-geometry (1.5)
Debian Science geometry packages
science-highenergy-physics (1.5)
Debian Science High Energy Physics packages
science-highenergy-physics-dev (1.5)
Debian Science High Energy Physics development packages
science-imageanalysis (1.5)
Debian Science image analysis packages
science-linguistics (1.5)
Debian Science Linguistics packages
science-logic (1.5)
Debian Science Logic packages
science-machine-learning (1.5)
Debian Science Machine Learning packages
science-mathematics (1.5)
Debian Science Mathematics packages
science-mathematics-dev (1.5)
Debian Science Mathematics-dev packages
science-meteorology (1.5)
Debian Science Meteorology packages
science-meteorology-dev (1.5)
Debian Science Meteorology-dev packages
science-nanoscale-physics (1.5)
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (1.5)
Debian Science Nanoscale Physics development packages
science-neuroscience-cognitive (1.5)
Debian Science packages for Cognitive Neuroscience
science-neuroscience-modeling (1.5)
Debian Science packages for modeling of neural systems
science-numericalcomputation (1.5)
Debian Science Numerical Computation packages
science-physics (1.5)
Debian Science Physics packages
science-physics-dev (1.5)
Debian Science Physics-dev packages
science-presentation (1.5)
Debian Science generic tools for presentations
science-psychophysics (1.5)
Debian Science packages for Psychophysics
science-robotics (1.5)
Debian Robotics packages
science-robotics-dev (1.5)
Debian Robotics development packages
science-simulations (1.5)
Debian Science Simulation packages
science-social (1.5)
Debian Science social sciences packages
science-statistics (1.5)
Debian Science Statistics packages
science-tasks (1.5)
Debian Science tasks for tasksel
science-typesetting (1.5)
Debian Science typesetting packages
science-viewing (1.5)
Debian Science data visualisation packages
science-viewing-dev (1.5)
Debian Science development of visualisation applications
scrm (1.7.2-1)
simulator of evolution of genetic sequences
sctk (2.4.10-20151007-1312Z+dfsg2-2)
speech recognition scoring toolkit
scythe (0.994-3)
Bayesian adaptor trimmer for sequencing reads
sdrangelove (0.0.1.20150707-1+b2 [ppc64], 0.0.1.20150707-1+b1 [alpha, amd64, arm64, hppa, i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x])
Osmocom Software Defined Radio
seaview (1:4.6-2)
Multiplatform interface for sequence alignment and phylogeny
seelablet (1.0.6-1)
python library and scripts for SEELablet experiment box
seelablet-common (1.0.6-1)
common files for SEELablet
seer (1.1.1-2)
genomic sequence element (kmer) enrichment analysis
seq-gen (1.3.3-1+b1 [armhf, hurd-i386], 1.3.3-1 [amd64, armel, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x]) [non-free]
simulate the evolution of nucleotide or amino acid sequences
seqan-apps (1.4.1+dfsg-2+b1 [ppc64], 1.4.1+dfsg-2 [alpha, amd64, arm64, armhf, hppa, i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.3.1-1 [sh4])
C++ library for the analysis of biological sequences
seqprep (1.2-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, x32], 1.1-4 [m68k, sh4, sparc64])
stripping adaptors and/or merging paired reads of DNA sequences with overlap
seqprep-data (1.2-1)
example data set for seqprep - only used for testing
seqtk (1.0-1+b1 [alpha, ppc64], 1.0-1 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x])
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sextractor (2.19.5+dfsg-4+b1 [ppc64], 2.19.5+dfsg-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 2.4.4-1 [m68k])
Source extractor for astronomical images
sga (0.10.14-1+b1 [ppc64], 0.10.14-1 [alpha, amd64, arm64, armel, armhf, hppa, kfreebsd-amd64, m68k, mips, mipsel, powerpc, ppc64el, s390x, sparc64, x32])
de novo genome assembler that uses string graphs
shelxle (1.0.748-1+b1 [ppc64], 1.0.748-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
graphical user interface for SHELXL
shogun-cmdline-static (3.2.0-7.3+b3 [amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, s390x], 3.2.0-7.3+b2 [hurd-i386], 3.2.0-7.3+b1 [alpha], 3.2.0-7.3 [hppa, sh4], 3.2.0-7 [ppc64])
Large Scale Machine Learning Toolbox
sibsim4 (0.20-2+b1 [ppc64], 0.20-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
align expressed RNA sequences on a DNA template
sickle (1.33-1+b1 [ppc64], 1.33-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
windowed adaptive trimming tool for FASTQ files using quality
sift (4.0.3b-4) [non-free]
predicts if a substitution in a protein has a phenotypic effect
sigma-align (1.1.3-4+b1 [ppc64], 1.1.3-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.5.1+svn556-4+b3 [ppc64], 0.5.1+svn556-4+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x], 0.5.1+svn556-4 [sparc64, x32], 0.5.1+svn556-1 [sh4])
GUI viewer for biosignals such as EEG, EMG, and ECG
sim4 (0.0.20121010-3)
tool for aligning cDNA and genomic DNA
sim4db (0~20150903+r2013-1+b1 [ppc64], 0~20150903+r2013-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64])
batch spliced alignment of cDNA sequences to a target genome
simgrid-java (3.12-2+b1 [ppc64], 3.12-2 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 3.11.1-10 [hppa, hurd-i386, m68k])
Java bindings for the SimGrid Toolkit
siril (0.9.3-1)
astronomical image processing tool
skycat (3.1.2+starlink1~b+dfsg-2+b2 [ppc64], 3.1.2+starlink1~b+dfsg-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 3.1.2+starlink1~b+dfsg-2 [powerpcspe])
Image visualization and access to catalogs and data for astronomy
slang-xfig (0.2.0~.35-1.1+b1 [hurd-i386, ppc64], 0.2.0~.35-1.1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
produce plots and drawings through Xfig's fig2dev in S-Lang
sleepyhead (1.0.0-beta-2+dfsg-1)
Sleep tracking software with a focus on monitoring CPAP treatment
smalt (0.7.6-6 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mipsel, ppc64, ppc64el], 0.7.6-5 [mips64el, x32], 0.7.6-4 [hurd-i386, m68k, sh4])
Sequence Mapping and Alignment Tool
smalt-examples (0.7.6-6)
Sequence Mapping and Alignment Tool (examples)
smrtanalysis (0~20160416)
software suite for single molecule, real-time sequencing
snakemake (3.5.5+dfsg-1)
pythonic workflow management system
snap (2013-11-29-2)
location of genes from DNA sequence with hidden markov model
snap-aligner (0.18~1.0~beta.18+dfsg1-3)
Scalable Nucleotide Alignment Program
snaphu (1.4.2-2) [non-free]
Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
snp-sites (2.3.2-1)
Binary code for the package snp-sites
snpomatic (1.0-3+b1 [ppc64], 1.0-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
fast, stringent short-read mapping software
soapdenovo (1.05-2+b1 [ppc64], 1.05-2 [amd64, kfreebsd-amd64])
short-read assembly method to build de novo draft assembly
soapdenovo2 (240+dfsg-2+b2 [ppc64], 240+dfsg-2 [amd64])
short-read assembly method to build de novo draft assembly
sortmerna (2.1-1)
tool for filtering, mapping and OTU-picking NGS reads
spaced (1.0.2+dfsg-1+b1 [ppc64], 1.0.2+dfsg-1 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, x32])
alignment-free sequence comparison using spaced words
spades (3.7.1+dfsg-3)
genome assembler for single-cell and isolates data sets
spass (3.7-3+b1 [armhf, hurd-i386, ppc64], 3.7-3 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
An automated theorem prover for first-order logic with equality
spatialite-bin (4.3.0-2+b1 [alpha, ppc64], 4.3.0-2 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Geospatial extension for SQLite - tools
spd (1.3.0-1+b1 [armhf, hurd-i386, ppc64], 1.3.0-1 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Synchrotron image corrections and azimuthal integration
splash (2.6.0-1+b1 [ppc64], 2.6.0-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Visualisation tool for Smoothed Particle Hydrodynamics simulation
sprai (0.9.9.14+dfsg-1)
single-pass sequencing read accuracy improver
spread-phy (1.0.7+dfsg-1)
analyze and visualize phylogeographic reconstructions
squizz (0.99b+dfsg-3+b1 [ppc64], 0.99b+dfsg-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Converter for genetic sequences and alignments
sra-toolkit (2.3.5-2+dfsg-1)
utilities for the NCBI Sequence Read Archive
sra-toolkit-libs-dev (2.3.5-2+dfsg-1)
Development files for the NCBI SRA Toolkit's libraries
sra-toolkit-libs0 (2.3.5-2+dfsg-1)
Libraries for the SRA Toolkit
ssake (3.8.4-1)
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.8.4-1)
example data for SSAKE, a genomic assembler of short reads
stacks (1.40-1 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips64el, mipsel, powerpcspe, ppc64, ppc64el, sh4, x32], 1.38-1 [armhf, hurd-i386, mips, powerpc, s390x, sparc64])
pipeline for building loci from short-read DNA sequences
stacks-web (1.40-1)
web interface for displaying loci from short-read sequences
staden (2.0.0+b10-5)
DNA sequence assembly (Gap4/Gap5), editing and analysis tools
staden-common (2.0.0+b10-5)
Architecture independent files for Staden
staden-io-lib-examples (1.14.8-1)
programs for maniuplating DNA sequencing files (usage examples)
staden-io-lib-utils (1.14.8-1)
programs for maniuplating DNA sequencing files
stardata-common (0.8+b1 [ppc64], 0.8 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Common framework to manage astronomy packages
starplot (0.95.5-8.1+b2 [ppc64, x32], 0.95.5-8.1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 0.95.5-8.1 [mips64el, powerpcspe])
3-dimensional perspective star map viewer
starpu-contrib-examples (1.1.4+dfsg-5+b1) [contrib]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples (1.1.4+dfsg-5+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sh4, sparc64, x32], 1.1.4+dfsg-3 [m68k])
Task scheduler for heterogeneous multicore machines - exs
starpu-examples
virtual package provided by starpu-contrib-examples
stellarium (0.14.3-1+b1 [ppc64], 0.14.3-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 0.13.3-2 [m68k], 0.12.4-1 [sh4])
real-time photo-realistic sky generator
stellarium-data (0.14.3-1)
Stellarium data files
step (4:15.08.3-1+b1 [ppc64], 4:15.08.3-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 4:4.14.2-2 [hurd-i386], 4:4.14.2-1 [m68k], 4:4.7.4-2 [sh4])
interactive physical simulator for KDE
stiff (2.4.0-2+b1 [ppc64], 2.4.0-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
convert scientific FITS images to the TIFF format
stimfit (0.15.2-1+b1)
Program for viewing and analyzing electrophysiological data
subread (1.5.0-p2+dfsg-3 [amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, ppc64el], 1.4.6-p2+dfsg-2 [x32])
toolkit for processing next-gen sequencing data
subread-data (1.5.0-p2+dfsg-3)
data files for subread package
suitename (0.3.070628-1+b1 [ppc64], 0.3.070628-1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4])
categorize each suite in an RNA backbone
sumaclust (1.0.20-1)
fast and exact clustering of genomic sequences
sumatra (1.0.20-1+b1 [ppc64], 1.0.20-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
fast and exact comparison and clustering of sequences
sumo (0.26.0+dfsg1-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 0.21.0+dfsg-1 [sh4])
Simulation of Urban MObility (SUMO)
surankco (0.0.r5+dfsg-1)
Supervised Ranking of Contigs in de novo Assemblies
survex (1.2.26-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.2.26-1 [ppc64, sh4], 1.2.11-1 [m68k])
cave surveying and mapping software
survex-aven (1.2.26-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.2.26-1 [ppc64, sh4], 1.2.11-1 [m68k])
sophisticated cave survey viewer for Survex
swarm (2.1.8-1)
robust and fast clustering method for amplicon-based studies
swarp (2.38.0+dfsg-3+b1 [ppc64], 2.38.0+dfsg-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Resample and co-add together FITS images
swarp
virtual package provided by suckless-tools
swe-basic-data (1.80.00.0002-1)
basic data files for the libswe package
swe-standard-data (00004-1)
standard data for the Swiss Ephemeris
synphot-data (0.9.7+dfsg-1) [contrib]
Optional data files for pysynphot
syrthes (4.3.0-dfsg1-1+b3 [ppc64], 4.3.0-dfsg1-1+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x], 4.3.0-dfsg1-1 [mips64el, sh4, sparc64, x32], 3.4.3-dfsg1-8 [m68k])
Transient thermal simulations in complex solid geometries
syrthes-gui (4.3.0-dfsg1-1)
Transient thermal simulations in complex solid geometries - GUI
syrthes-tests (4.3.0-dfsg1-1)
Test cases for SYRTHES
syrthes-tools (4.3.0-dfsg1-1+b3 [ppc64], 4.3.0-dfsg1-1+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x], 4.3.0-dfsg1-1 [mips64el, sh4, sparc64, x32])
Transient thermal simulations in complex solid geometries - tools
t-coffee (11.00.8cbe486-3)
Multiple Sequence Alignment
t-coffee-examples (11.00.8cbe486-3)
annotated examples for the use of T-Coffee
tabix (1.3.1-1)
generic indexer for TAB-delimited genome position files
tandem-mass (1:20151215-4+b1 [ppc64], 1:20151215-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
mass spectrometry software for protein identification
tantan (13-4+b1 [ppc64], 13-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
low complexity and tandem repeat masker for biosequences
tcd-utils (20061127-2+b2 [hppa], 20061127-2+b1 [armhf, hurd-i386, ppc64], 20061127-2 [alpha, amd64, arm64, armel, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
convert Tide Constituent Database (TCD) files
terraintool (1.12a-1)
Generates survex format terrain models from SRTM and ASTER data
tessa (0.3.1-6.1+b5 [s390x], 0.3.1-6.1+b4 [ppc64], 0.3.1-6.1+b3 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc], 0.3.1-6.1+b2 [arm64, hppa, ppc64el, sh4, sparc64, x32], 0.3.1-6.1+b1 [m68k, mips64el])
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-6.1+b5 [s390x], 0.3.1-6.1+b4 [ppc64], 0.3.1-6.1+b3 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc], 0.3.1-6.1+b2 [arm64, hppa, ppc64el, sh4, sparc64, x32], 0.3.1-6.1+b1 [m68k, mips64el])
simulation of 3D optical systems using FDTD on MPI clusters
thepeg (1.8.0-1.1+b1 [ppc64], 1.8.0-1.1 [alpha, amd64, arm64, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64el, s390x, sparc64, x32], 1.8.0-1 [armel, armhf])
Toolkit for High Energy Physics Event Generation
thepeg-gui (1.8.0-1.1)
Java GUI of ThePEG
thepeg-reference (1.8.0-1.1)
Code reference of ThePEG
therion (5.3.16-10+b2 [ppc64], 5.3.16-10+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32], 5.3.16-10 [hurd-i386], 5.3.9-1+b1 [sh4], 5.3.8-2 [sparc64], 0.5.1+nmu1 [m68k])
Cave surveying - 2D and 3D drawing software
therion-viewer (5.3.16-10+b2 [ppc64], 5.3.16-10+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32], 5.3.16-10 [hurd-i386], 5.3.9-1+b1 [sh4], 5.3.8-2 [sparc64], 0.5.1+nmu1 [m68k])
Cave surveying - 3D viewer for therion models
theseus (3.3.0-5)
superimpose macromolecules using maximum likelihood
theseus-examples (3.3.0-5)
superimpose macromolecules using maximum likelihood (examples)
tigr-glimmer (3.02-4+b1 [ppc64], 3.02-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Gene detection in archea and bacteria
timbl (6.4.6-1+b2 [ppc64], 6.4.6-1+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 6.4.6-1 [mips64el, powerpcspe])
Tilburg Memory Based Learner
timblserver (1.8-1.1+b1 [ppc64], 1.8-1.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Server extensions for Timbl
tksao (7.4.1+repack-1+b1 [ppc64], 7.4.1+repack-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64], 7.4+repack-1 [hurd-i386])
Tk widgets for astronomical imaging and data visualization
tm-align (20150914+dfsg-1+b1 [ppc64], 20150914+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
structual alignment of proteins
tophat (2.1.1+dfsg-2 [amd64, kfreebsd-amd64], 2.0.12+dfsg-2 [alpha, arm64, hppa, ppc64, sh4, x32])
fast splice junction mapper for RNA-Seq reads
topp (2.0.0-4+b2 [ppc64], 2.0.0-4+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32])
set of programs implementing The OpenMS Proteomic Pipeline
toppred (1.10-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 1.10-1 [sh4])
transmembrane topology prediction
transcalc (0.14-5+b2 [hppa], 0.14-5+b1 [armhf, hurd-i386, ppc64], 0.14-5 [alpha, amd64, armel, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, s390x, sh4, sparc64, x32])
microwave and RF transmission line calculator
transdecoder (3.0.0+dfsg-1)
find coding regions within RNA transcript sequences
transrate-tools (1.0.0-1+b1 [ppc64], 1.0.0-1 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
helper for transrate
transtermhp (2.09-3+b1 [ppc64], 2.09-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
find rho-independent transcription terminators in bacterial genomes
travis (151107-1+b1 [ppc64], 151107-1 [alpha, amd64, arm64, armel, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32], 150916-1 [armhf])
trajectory analyzer and visualizer
tree-ppuzzle (5.2-8+b2 [ppc64], 5.2-8+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sparc64], 5.2-8 [powerpcspe, s390x, sh4, x32], 5.2-5 [m68k])
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-8+b2 [ppc64], 5.2-8+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sparc64], 5.2-8 [powerpcspe, s390x, sh4, x32], 5.2-5 [m68k])
Reconstruction of phylogenetic trees by maximum likelihood
treeview (1.1.6.4+dfsg1-1)
Java re-implementation of Michael Eisen's TreeView
treeviewx (0.5.1+20100823-3+b2 [ppc64, s390x], 0.5.1+20100823-3+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, sh4, x32], 0.5.1+20100823-3 [mips64el, sparc64], 0.5.1+20100823-2 [m68k])
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [non-free]
High-quality 2-D mesh generator binary programs
trimmomatic (0.36+dfsg-1)
flexible read trimming tool for Illumina NGS data
trinityrnaseq (2.2.0+dfsg-1 [amd64], 2.1.1+dfsg2-1 [kfreebsd-amd64])
RNA-Seq De novo Assembly
trinityrnaseq-examples (2.2.0+dfsg-1)
RNA-Seq De novo Assembly common example and testing files
tunnelx (20140102-3)
Cave Survey drawing software
twms (0.05t-2)
tiny web map service
ubertooth (2015.09.R2-4+b1 [ppc64], 2015.09.R2-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32])
2.4 GHz wireless development platform for Bluetooth experimentation
ubertooth-firmware (2015.09.R2-4)
Firmware for Ubertooth
ubertooth-firmware-source (2015.09.R2-4)
Source code for the Ubertooth firmware
uc-echo (1.12-9+b1 [ppc64], 1.12-9 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
error correction algorithm designed for short-reads from NGS
ucto (0.8.0-2+b1 [ppc64], 0.8.0-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Unicode Tokenizer
ugene (1.21.0+dfsg-1) [non-free]
integrated bioinformatics toolkit
ugene-data (1.21.0+dfsg-1) [non-free]
required data for UGENE - integrated bioinformatics toolkit
uhd-host (3.9.4-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 3.9.3-2 [sh4])
universal hardware driver for Ettus Research products - host apps
units-filter (3.7-1+b1 [ppc64], 3.7-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Parser for expressions concerning physical values
urg-utils (0.8.18-2) [debports]
utilities for Hokuyo URG/UTM laser range scanners
utopia-documents (2.4.4-2.1+b1 [mips64el, x32], 2.4.4-2.1 [alpha, amd64, arm64, hppa, i386, mips, mipsel, powerpc, ppc64, ppc64el, s390x], 2.4.4-2 [m68k])
PDF reader that displays interactive annotations on scientific articles.
v-sim (3.7.2-1+b4 [ppc64], 3.7.2-1+b3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, x32], 3.7.2-1+b1 [mips64el, sparc64])
Visualize atomic structures
v-sim-common (3.7.2-1)
Visualize atomic structures (support files)
v-sim-plugins (3.7.2-1+b4 [ppc64], 3.7.2-1+b3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, x32], 3.7.2-1+b1 [mips64el, sparc64])
Plugins for V_Sim (a 3D visualization package)
varna (3-93+ds-1)
Visualization Applet for RNA
varscan (2.3.9+dfsg-1) [non-free]
variant detection in next-generation sequencing data
vcftools (0.1.14+dfsg-2+b1 [ppc64], 0.1.14+dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Collection of tools to work with VCF files
velvet (1.2.10+dfsg1-3+b1 [ppc64], 1.2.10+dfsg1-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg1-3)
Example data for the Velvet sequence assembler
velvet-long (1.2.10+dfsg1-3+b1 [ppc64], 1.2.10+dfsg1-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Nucleic acid sequence assembler for very short reads, long version
velvet-tests (1.2.10+dfsg1-3)
Test data for the Velvet sequence assembler
velvetoptimiser (2.2.5-2)
automatically optimise Velvet do novo assembly parameters
veusz (1.21.1-1)
2D scientific plotting application with graphical interface
veusz-helpers (1.21.1-1+b1 [ppc64], 1.21.1-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.15-1 [sh4])
Architecture-specific helper module for Veusz
viewmol (2.4.1-23+b2 [ppc64], 2.4.1-23+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 2.4.1-23 [powerpcspe])
A graphical front end for computational chemistry programs.
visp-images-data (3.0.0-2)
visual servoing library - dataset reference files
vistrails (2.2-1 [all], 2.0.alpha~1-2 [alpha, sh4, sparc64])
Science visualisation workflow toolkit
vmtk (1.3-2) [non-free]
the Vascular Modeling Toolkit
votca-csg (1.3.0-1)
VOTCA's coarse-graining engine
votca-csg-scripts (1.3.0-1)
VOTCA's coarse-graining scripts
votca-csg-tutorials (1.3.0-1)
VOTCA's coarse-graining tutorials
vowpal-wabbit (8.1.1-1 [amd64, kfreebsd-amd64, x32], 7.3-1.1+b3 [alpha, ppc64], 7.3-1.1+b2 [armel, armhf, hppa, hurd-i386, i386, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390x, sh4, sparc64], 7.3-1.1+b1 [arm64, mips64el, ppc64el])
fast and scalable online machine learning algorithm
voxbo (1.8.5~svn1246-2+b2 [ppc64], 1.8.5~svn1246-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
processing, statistical analysis, and display of brain imaging data
vsearch (1.11.1-1)
tool for processing metagenomic sequences
wcslib-tools (5.15-1)
Command line tools utilizing wcslib
wcslib-tools-wcsgrid (5.15-1) [contrib]
Command line tool utilizing libpgsbox
wcstools (3.9.2-5+b1 [ppc64], 3.9.2-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sparc64, x32], 3.9.2-3 [sh4])
Handle the WCS of a FITS image
weightwatcher (1.12-1+b1 [ppc64], 1.12-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Combine maps and polygon data for astronomical image processing
weka (3.6.13-1)
Machine learning algorithms for data mining tasks
wfrog (0.8.2+svn973-1)
Web-based customizable weather station software
wigeon (20101212+dfsg1-1)
reimplementation of the Pintail 16S DNA anomaly detection utility
wise (2.4.1-18 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sh4, sparc64, x32], 2.4.1-17 [powerpcspe])
comparison of biopolymers, like DNA and protein sequences
wxastrocapture (1.8.1+git20140821+dfsg-1+b2 [ppc64], 1.8.1+git20140821+dfsg-1+b1 [amd64, arm64, armel, armhf, i386, mips, mipsel, powerpc, ppc64el, s390x], 1.8.1+git20140821+dfsg-1 [mips64el, sh4, x32])
Windows linuX Astronomy Capture
xbs (0-10+b1 [ppc64], 0-10 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
3-d models and movies of molecules
xcrysden (1.5.60-1+b1 [ppc64], 1.5.60-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Crystalline and Molecular Structure Visualizer
xcrysden-data (1.5.60-1)
Crystalline and Molecular Structure Visualizer (Data Files)
xdrawchem (2.0-4+b1 [ppc64], 2.0-4 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 2.0-3 [m68k], 2.0-2 [sh4])
Chemical structures and reactions editor
xflr5 (6.09.06-2+b3 [ppc64], 6.09.06-2+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 6.09.06-2 [mips64el])
analysis tool for airfoils
xfoil (6.99.dfsg-2+b1 [ppc64], 6.99.dfsg-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
program for the design and analysis of subsonic airfoils
xmakemol (5.16-9+b1 [ppc64], 5.16-9 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
program for visualizing atomic and molecular systems
xmakemol-gl (5.16-9+b1 [ppc64], 5.16-9 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
program for visualizing atomic and molecular systems (OpenGL)
xmds (1.6.6-7) [debports]
eXtensible Multi-Dimensional Simulator
xmds2 (2.2.2+dfsg-2)
eXtensible Multi-Dimensional Simulator
xpa-tools (2.1.17-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64, ppc64el, s390x, sh4, sparc64], 2.1.17-1 [hurd-i386])
Tools for seamless communication between Unix programs
xplot (1.19-9+b2 [hppa], 1.19-9+b1 [alpha, armhf, hurd-i386, powerpc, ppc64], 1.19-9 [amd64, arm64, armel, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
simple on-screen x-y column data plotter
xplot-xplot.org (0.90.7.1-2+b2 [hppa], 0.90.7.1-2+b1 [armhf, hurd-i386, ppc64], 0.90.7.1-2 [alpha, amd64, arm64, armel, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
fast tool to graph and visualize lots of data
xppaut (6.11b+1.dfsg-1+b1 [armhf, hurd-i386, ppc64], 6.11b+1.dfsg-1 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Phase Plane Plus Auto: Solves many kinds of equations
xtide (2.13.2-1+b3 [ppc64, x32], 2.13.2-1+b2 [amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64el, s390x, sh4, sparc64], 2.13.2-1+b1 [alpha, mips64el], 2.13.2-1 [powerpcspe])
provides tide and current predictions
xtide-coastline (20020202-1)
coastline data for xtide
xtide-data (20100529-1)
Harmonics data for xtide
xtide-data-nonfree (20100529-1) [non-free]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xyscan (3.33-1+b1 [ppc64], 3.33-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 3.31-3 [sh4])
data thief for scientists
yade (1.20.0-9 [amd64, hppa, i386, kfreebsd-amd64, mips64el, powerpc, ppc64, ppc64el, s390x], 1.20.0-8+b1 [arm64], 1.20.0-8 [x32], 1.20.0-2 [kfreebsd-i386], 1.00.0-2 [alpha])
Platform for discrete element modeling
yagv (0.4~20130422.r5bd15ed+dfsg-1)
yet another G-code viewer
yale (5.0.95-2) [non-free]
stellar data set from the Yale Bright Star Catalog
yorick (2.2.04+dfsg1-5+b1 [ppc64], 2.2.04+dfsg1-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 2.2.04+dfsg1-3 [sh4], 2.2.02+dfsg-6 [m68k])
interpreted language and scientific graphics
yorick-av (0.0.3-4+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, x32], 0.0.3-4 [ppc64, sparc64], 0.0.3-3+b2 [sh4], 0.0.3-2 [m68k])
write movies from Yorick in various formats
yorick-cubeview (2.2-2)
3D FITS data viewer specialized in spectro-imaging
yorick-curses (0.1-6+b2 [ppc64], 0.1-6+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 0.1-6 [m68k])
interface to the (n)curses library for the Yorick language
yorick-data (2.2.04+dfsg1-5)
interpreted library for the Yorick language
yorick-dev (2.2.04+dfsg1-5+b1 [ppc64], 2.2.04+dfsg1-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 2.2.04+dfsg1-3 [sh4], 2.2.02+dfsg-6 [m68k])
development files for the Yorick interpreted language
yorick-full (2.2.04+dfsg1-5+b1 [ppc64], 2.2.04+dfsg1-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 2.2.04+dfsg1-3 [sh4], 2.2.02+dfsg-6 [m68k])
full installation of the Yorick interpreter and add-ons
yorick-gl (1.1+cvs20070922+dfsg-6.1+b1 [ppc64], 1.1+cvs20070922+dfsg-6.1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
OpenGL 3D graphics support for the Yorick language
yorick-gy (0.0.5-1+b1 [ppc64], 0.0.5-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
GObject introspection and Gtk bindings for Yorick
yorick-gyoto (1.0.2-2+b2 [ppc64], 1.0.2-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64], 1.0.2-1 [sh4, x32], 0.0.3-5 [m68k])
General relativistic geodesic integration for the Yorick language
yorick-hdf5 (0.8.0-5+b3 [ppc64], 0.8.0-5+b2 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x], 0.8.0-5+b1 [arm64, hppa, hurd-i386, ppc64el, sh4, sparc64, x32], 0.8.0-5 [mips64el], 0.8.0-4 [m68k])
Hierarchical Data Format 5 interface for the Yorick language
yorick-imutil (0.5.7-3+b1 [ppc64], 0.5.7-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
fast image manipulation routines for the Yorick language
yorick-mira (0.9.10+dfsg-1)
optical interferometry image reconstruction within Yorick
yorick-ml4 (0.6.0-3+b1 [ppc64], 0.6.0-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
Matlab file format support for the Yorick language
yorick-mpeg (0.1-3+b1 [ppc64], 0.1-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
MPEG output support for the Yorick language
yorick-mpy-common (2.2.04+dfsg1-5)
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.04+dfsg1-5+b1 [ppc64], 2.2.04+dfsg1-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 2.2.04+dfsg1-3 [sh4], 2.2.02+dfsg-6 [m68k])
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.04+dfsg1-5+b1 [ppc64], 2.2.04+dfsg1-5 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x, sparc64, x32])
Message Passing Yorick (OpenMPI build)
yorick-optimpack (1.3.2+dfsg-1+b1 [ppc64], 1.3.2+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
optimization of large scale problems for the Yorick language
yorick-soy (1.4.0-3+b1 [ppc64], 1.4.0-3 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
sparse matrix operations for the Yorick language
yorick-spydr (0.8.2-3)
FITS image display and simple analysis
yorick-svipc (0.16-2+b3 [ppc64], 0.16-2+b2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 0.16-2 [sh4])
interprocess communication (shared memory...) for Yorick
yorick-yao (5.4.0-1+b1 [ppc64], 5.4.0-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 5.3.1-1 [m68k])
Yorick-based adaptive optics system simulator
yorick-yeti (6.3.3-2+b1 [ppc64], 6.3.3-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
utility plugin for the Yorick language
yorick-yeti-fftw (6.3.3-2+b1 [ppc64], 6.3.3-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
FFT plugin for the Yorick language
yorick-yeti-gsl (6.3.3-2)
dummy transitional package
yorick-yeti-gsl
virtual package provided by yorick-ygsl
yorick-yeti-regex (6.3.3-2+b1 [ppc64], 6.3.3-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
POSIX regular expressions for the Yorick language
yorick-yeti-tiff (6.3.3-2+b1 [ppc64], 6.3.3-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32])
TIFF image format input for the Yorick language
yorick-ygsl (1.2.0-2+b1 [ppc64], 1.2.0-2 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sh4, sparc64, x32], 1.1.1-3 [m68k])
GSL special functions plugin for the Yorick language
yorick-ynfft (1.0.3-1+b1 [ppc64], 1.0.3-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, s390x, sparc64, x32], 1.0.2-2 [sh4])
nonequispaced fast Fourier transform for Yorick
yorick-yutils (1.5.2-1)
various utilities for the Yorick language
yorick-z (1.2.0+cvs20080115-5+b4 [ppc64], 1.2.0+cvs20080115-5+b3 [alpha], 1.2.0+cvs20080115-5+b2 [amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64el, s390x], 1.2.0+cvs20080115-5+b1 [hppa, mips64el, sparc64, x32], 1.2.0+cvs20080115-5 [m68k, sh4])
zlib, jpeg and png support for the Yorick language
z3 (4.4.0-5 [amd64, armel, armhf, i386, powerpc], 4.4.0-2+b1 [mips, mipsel, x32], 4.4.0-2 [alpha, sparc64])
theorem prover from Microsoft Research
z88 (13.0.0+dfsg2-3+b1 [armhf, hurd-i386, ppc64], 13.0.0+dfsg2-3 [alpha, amd64, arm64, armel, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
Finite Element Analysis Program - runtime
z88-data (13.0.0+dfsg2-3)
Finite Element Analysis Program - data
zalign (0.9.1-2+b2 [ppc64], 0.9.1-2+b1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64el, sparc64], 0.9.1-2 [powerpcspe, s390x, sh4, x32])
parallel local alignment of biological sequences
zegrapher (3.0-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mips64el, mipsel, powerpc, ppc64, ppc64el, s390x, sparc64, x32], 2.0-4 [m68k, sh4])
plotting mathematical functions and sequences on the plane
zimpl (3.3.2-1+b1 [ppc64], 3.3.2-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mips64el, mipsel, powerpc, powerpcspe, ppc64el, s390x, sh4, sparc64, x32])
mathematical modeling language for optimization problems
ztex-bmp (20120314-2+b1 [ppc64], 20120314-2 [amd64, arm64, armel, armhf, i386, powerpc])
universal macro processor