Software Packages in "sid", Subsection science

3depict (0.0.15-3 [alpha, amd64, armel, armhf, hppa, i386, mips, mipsel, powerpc, ppc64, s390x, sparc, x32], 0.0.13-1 [powerpcspe, sh4, sparc64])
visualisation and analysis for single valued point data
abacas (1.3.1-2)
Algorithm Based Automatic Contiguation of Assembled Sequences
abinit (5.3.4.dfsg-4)
package for electronic structure calculations
abyss (1.3.6-1) [non-free]
de novo, parallel, sequence assembler for short reads
acedb-other (4.9.39+dfsg.01-5)
retrieval of DNA or protein sequences
acedb-other-belvu (4.9.39+dfsg.01-5)
multiple sequence alignment editor
acedb-other-dotter (4.9.39+dfsg.01-5)
visualisation of sequence similarity
aces3 (3.0.6-7+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 3.0.6-7 [mips, mipsel, powerpcspe, ppc64, s390x, sh4, sparc64, x32], 3.0.6-6 [m68k])
Advanced Concepts in Electronic Structure III
achilles (2-8+b2 [hppa], 2-8+b1 [hurd-i386], 2-8 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
An artificial life and evolution simulator
aeskulap (0.2.2b1-13 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 0.2.2b1-12 [m68k], 0.2.2b1-11 [sh4])
medical image viewer and DICOM network client
aevol (4.2-1)
digital genetics model to run Evolution Experiments in silico
aghermann (1.0-3)
Sleep-research experiment manager
algotutor (0.8.6-1)
program for observing the intermediate steps of algorithm
alien-hunter (1.7-3)
Interpolated Variable Order Motifs to identify horizontally acquired DNA
altree (1.3.1-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.3.1-1 [powerpcspe], 1.3.0-1 [sh4], 1.0.1-5+b2 [sparc64], 1.0.1-3 [m68k])
program to perform phylogeny-based association and localization analysis
altree-examples (1.3.1-2)
example files for ALTree
amap-align (2.2-4)
Protein multiple alignment by sequence annealing
ampliconnoise (1.29-2 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, sparc, sparc64], 1.22-2 [sh4])
removal of noise from 454 sequenced PCR amplicons
anfo (0.98-4)
Short Read Aligner/Mapper from MPG
ants (2.0.0-1 [amd64, i386], 1.9.2+svn680.dfsg-4 [alpha, armel, armhf, hurd-i386, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 1.9+svn532-5 [hppa])
advanced normalization tools for brain and image analysis
apbs (1.4-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 1.3.0-2 [m68k])
Adaptive Poisson Boltzmann Solver
aragorn (1.2.36-2)
tRNA and tmRNA detection in nucleotide sequences
arb (5.5-5+b1) [non-free]
Integrated package for sequence database handling and analysis
arb-common (5.5-5) [non-free]
Integrated package for sequence database handling and analysis (data+scripts)
arden (1.0-1)
specificity control for read alignments using an artificial reference
ask (1.0.1-1)
Adaptive Sampling Kit for big experimental spaces
astronomical-almanac (5.6-4+b1 [hurd-i386], 5.6-4 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
astronomical almanac - calculate planet and star positions
autodock (4.2.5.1-4 [amd64], 4.2.5.1-3 [alpha, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
analysis of ligand binding to protein structure
autodock-getdata (4.2.5.1-4)
instructions for getData to collect compounds
autodock-test (4.2.5.1-4)
test files for AutoDock
autodock-vina (1.1.2-3 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sparc64, x32], 1.1.2-2+b2 [sh4, sparc], 1.1.2-2 [powerpcspe], 1.1.1-3 [hppa])
docking of small molecules to proteins
autodocktools (1.5.7~rc1~cvs.20130519-1) [non-free]
GUI to help set up, launch and analyze AutoDock dockings
autogrid (4.2.5.1-4 [amd64], 4.2.5.1-3 [alpha, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
pre-calculate binding of ligands to their receptor
autogrid-test (4.2.5.1-4)
test files for AutoGrid
avce00 (2.0.0-2+b100 [powerpcspe], 2.0.0-2+b2 [hppa], 2.0.0-2+b1 [hurd-i386], 2.0.0-2 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc, sparc64, x32])
Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.
avida-base (2.0b7-4.2) [debports]
Auto-adaptive genetic system for Artificial Life research
avida-qt-viewer (2.0b7-4.2) [debports]
qt viewer for avida
avida-viewer (2.0b7-4.2) [debports]
ncurses viewer for avida
avogadro (1.0.3-10.1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 1.0.3-10+b1 [m68k, x32])
Molecular Graphics and Modelling System
avogadro-data (1.0.3-10.1)
Molecular Graphics and Modelling System (Data Files)
aweather (0.8.1-1+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc], 0.8.1-1 [hppa, hurd-i386, powerpcspe, ppc64, sh4, sparc64, x32])
Advanced Weather Monitoring Program
ballview (1.4.2+20140406-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.4.1+20111206-4 [m68k, powerpcspe, sh4, sparc64, x32])
free molecular modeling and molecular graphics tool
bamtools (2.3.0+dfsg-1)
toolkit for manipulating BAM (genome alignment) files
bauble (0.9.7-2)
biodiversity collection manager software application
beast-mcmc (1.7.5-1) [contrib]
Bayesian MCMC phylogenetic inference
beast-mcmc-lib (1.6.2-3) [contrib]
Bayesian MCMC phylogenetic inference
beast-mcmc-lib
virtual package provided by libnucleotidelikelihoodcore0
bedtools (2.19.1-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sparc], 2.19.0-1 [powerpcspe, sh4, sparc64, x32])
suite of utilities for comparing genomic features
bedtools-test (2.19.1-1)
test data for the bedtools package
bibus (1.5.2-3)
bibliographic database
biococoa.app (1.6.0-8) [debports]
biological sequence file format conversion applet for GNUstep
biogenesis (0.8-2)
artificial life program that simulates evolution of organisms
biomaj (1.2.3-3)
biological data-bank updater
biomaj-properties (1.2.3-3)
biological data-bank updater - example properties files
biomaj-watcher (1.2.1-1) [contrib]
biological data-bank updater - web interface
bioperl (1.6.923-1)
Perl tools for computational molecular biology
bioperl-run (1.6.9-2)
BioPerl wrappers: scripts
biosig-tools (1.3.0-2+b2 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.3.0-2+b1 [alpha, powerpcspe], 1.3.0-2 [hppa, sh4, sparc64, x32])
format conversion tools for biomedical data formats
biosquid (1.9g+cvs20050121-3)
utilities for biological sequence analysis
bist (0.5.2-1+b1 [hurd-i386], 0.5.2-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
chemical drawing tool
bkchem (0.13.0-4)
Chemical structures editor
blast2 (1:2.2.26.20120620-7)
Basic Local Alignment Search Tool
blimps-utils (3.9-1) [non-free]
blocks database improved searcher
bodr (10-1)
Blue Obelisk Data Repository
boinc-app-milkyway (0.18d-4 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 0.18d-1.1 [m68k])
Milkyway@home application for the BOINC client
boinc-app-seti (7.28~svn2203-1 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 7.19~svn2051-2 [alpha, x32], 7.19~svn2050-2.is.7.00~svn1933-2 [powerpcspe, sh4, sparc64], 6.97~svn1409-1 [m68k])
SETI@home application for the BOINC client
boinc-app-seti-graphics (7.28~svn2203-1 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 7.19~svn2051-2 [alpha, x32], 7.19~svn2050-2.is.7.00~svn1933-2 [powerpcspe, sh4, sparc64])
SETI@home application for the BOINC client (with graphics)
boolector (1.5.118.6b56be4.121013-1)
SMT solver for bit-vectors and arrays
bowtie (1.0.0-6 [alpha, amd64, arm64, armel, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 1.0.0-5 [armhf, i386, mips, mipsel])
Ultrafast memory-efficient short read aligner
bowtie-examples (1.0.0-6)
Examples for bowtie, the ultrafast memory-efficient short read aligner
bowtie2 (2.2.2-1)
ultrafast memory-efficient short read aligner
bowtie2-examples (2.2.2-1)
Examples for bowtie2
boxshade (3.3.1-8)
Pretty-printing of multiple sequence alignments
bppphyview (0.3.0-1)
Bio++ Phylogenetic Viewer
bppsuite (0.8.0-1+build1)
Bio++ program suite
bwa (0.7.8-1 [amd64, kfreebsd-amd64], 0.7.5a-1 [x32], 0.6.2-1 [alpha, hurd-i386, m68k, powerpcspe, ppc64, sh4, sparc64], 0.5.9-2 [hppa])
Burrows-Wheeler Aligner
cain (1.9-7)
simulations of chemical reactions
cain-examples (1.9-7)
simulations of chemical reactions
cain-solvers (1.9-7)
simulations of chemical reactions
camitk-actionstatemachine (3.2.2-2)
pipeline replay application for the CamiTK library
camitk-imp (3.2.2-2)
workbench application for the CamiTK library
caret (5.6.4~dfsg.1-3+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 5.6.4~dfsg.1-3 [hppa, powerpcspe, x32], 5.6.4~dfsg.1-1 [sh4])
Computerized Anatomical Reconstruction and Editing Toolkit
cassbeam (1.0-8) [debports]
A program for Cassegrain antenna modelling
cassiopee (1.0.1+dfsg-1)
index and search tool in genomic sequences
cba (0.3.6-4+b2 [hppa], 0.3.6-4+b1 [hurd-i386], 0.3.6-4 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Continuous Beam Analysis
cbflib-bin (0.9.2.2-1)
utilities to manipulate CBF files
cbmc (4.5-2 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390x, sparc], 4.3-6 [sh4, sparc64], 4.1-1.2 [ppc64])
bounded model checker for C and C++ programs
cclib (1.1-1)
Parsers and algorithms for computational chemistry
cclib-data (1.1-1) [non-free]
Parsers and algorithms for computational chemistry (data files)
cd-hit (4.6.1-2012-08-27-2)
suite of programs designed to quickly group sequences
cdbfasta (0.99-20100722-1)
Constant DataBase indexing and retrieval tools for multi-FASTA files
celestia (1.6.1+dfsg-3)
real-time visual space simulation
celestia-common (1.6.1+dfsg-3)
datafiles for Celestia, a real-time visual space simulation
celestia-common-nonfree (1.6.1-1) [non-free]
Non-free datafiles for Celestia, a real-time visual space simulation
celestia-glut (1.6.1+dfsg-3 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 1.6.1+dfsg-2 [sh4])
real-time visual space simulation (GLUT frontend)
cernlib (20061220+dfsg3-4)
CERNLIB data analysis suite - general use metapackage
cernlib-core (20061220+dfsg3-4)
CERNLIB data analysis suite - main libraries and programs
cernlib-extras (20061220+dfsg3-4)
CERNLIB data analysis suite - extra programs
cernlib-montecarlo (20061220+dfsg3-3)
CERNLIB Monte Carlo libraries
cgns-convert (3.1.4.2-1)
CFD General Notation System - Conversion tools
ch5m3d (1.2.5+dfsg-1)
create and visualize 3-dimensional drawings of simple molecules
chemical-structures (2.2.dfsg.0-11)
set of molecular structures in open formats
chemtool (1.6.14-1)
chemical structures drawing program
chimeraslayer (20101212+dfsg-1)
detects likely chimeras in PCR amplified DNA
choreonoid (1.1.0+dfsg-6.1)
Integrated robotics GUI environment
choreonoid-data (1.1.0+dfsg-6.1)
Integrated robotics GUI environment - shared data
choreonoid-plugins-base (1.1.0+dfsg-6.1)
Integrated robotics GUI environment - core plug-ins
circos (0.64-1)
plotter for visualizing data
circos-tools (0.16-3)
plotter for visualizing data - helper utilities
clearcut (1.0.9-1)
extremely efficient phylogenetic tree reconstruction
clinica (0.3.0-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 0.2.1~dfsg-1 [sh4])
Simple medical records manager
clinica-common (0.3.0-1)
Simple medical records manager (architecture independent files)
clinica-dev (0.3.0-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 0.2.1~dfsg-1 [sh4])
Simple medical records manager (development files)
clinica-plugins (0.3.0-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 0.2.1~dfsg-1 [sh4])
Simple medical records manager (plugins)
clonalframe (1.2-3+b1 [hurd-i386], 1.2-3 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
inference of bacterial microevolution using multilocus sequence data
clustalo (1.2.1-1 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64], 1.2.0-1 [alpha, x32], 1.1.0-1 [sh4])
General purpose multiple sequence alignment program for proteins
clustalw (2.1+lgpl-4)
global multiple nucleotide or peptide sequence alignment
clustalw-mpi (0.15-3) [non-free]
MPI-distributed global sequence alignment with ClustalW
clustalx (2.1+lgpl-2+b1 [hurd-i386], 2.1+lgpl-2 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Multiple alignment of nucleic acid and protein sequences (graphical interface)
cluster3 (1.52-2) [non-free]
Reimplementation of the Eisen-clustering software
cmtk (3.0.0-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 2.2.2-2 [m68k])
Computational Morphometry Toolkit
cnrun (1.1.14-1)
NeuroML-capable neuronal network simulator
code-aster (11.5.0+dfsg2-1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, sparc], 11.3.0-2-2 [alpha, hurd-i386])
Code_Aster finite element program - metapackage
code-aster-engine (11.3.0-2-2)
Code_Aster finite element program - sequential binary
code-aster-gui (1.13.1-1)
Graphical user interface for Code_Aster - client
code-aster-mpi-engine (11.5.0+dfsg2-1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, sparc], 11.3.0-2-2 [alpha, hurd-i386])
Code_Aster finite element program - parallel binary
code-aster-run (1.13.1-1)
Graphical user interface for Code_Aster - server
code-aster-test (11.5.0+dfsg2-1)
Code_Aster finite element program - test files and examples
code-saturne (3.2.1-1)
General purpose Computational Fluid Dynamics (CFD) software
code-saturne-bin (3.2.1-1)
General purpose Computational Fluid Dynamics (CFD) software - binaries
code-saturne-data (3.2.1-1)
General purpose Computational Fluid Dynamics (CFD) software - data
code-saturne-doc (3.2.1-1)
General purpose Computational Fluid Dynamics (CFD) software - Documentation
code-saturne-include (3.2.1-1)
General purpose Computational Fluid Dynamics (CFD) software - includes
coinor-cbc (2.8.7-1)
Coin-or branch-and-cut mixed integer programming solver
coinor-clp (1.15.5-1)
Coin-or linear programming solver
coinor-csdp (6.1.1-1+b2 [hppa, hurd-i386], 6.1.1-1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, x32])
A software package for semidefinite programming
coinor-libcbc3 (2.8.7-1)
Coin-or branch-and-cut mixed integer programming solver (shared libraries)
coinor-libcgl0 (0.55.0-1.1 [powerpcspe, sh4], 0.55.0-1 [hppa]) [debports]
Cut Generator Library, a library of cutting-plane generators
coinor-libcgl1 (0.58.4-2)
COIN-OR Cut Generation Library
coinor-libclp0 (1.12.0-2.1 [powerpcspe, sh4], 1.12.0-2 [hppa]) [debports]
Coin-or linear programming solver
coinor-libclp1 (1.15.5-1)
Coin-or linear programming solver (shared libraries)
coinor-libcoinutils0 (2.6.4-3) [debports]
Coin-or collection of utility classes
coinor-libcoinutils3 (2.9.10-1)
Coin-or collection of utility classes (binaries and libraries)
coinor-libflopc++0 (1.0.6-3.1+b2 [hurd-i386], 1.0.6-3.1+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc], 1.0.6-3.1 [hppa, m68k, powerpcspe, ppc64, sh4, sparc64, x32])
Formulation of Linear Optimization Problems in C++
coinor-libosi0 (0.103.0-1) [debports]
COIN-OR Open Solver Interface
coinor-libosi1 (0.106.4-1)
COIN-OR Open Solver Interface
coinor-libsymphony0 (5.2.4-1.2 [powerpcspe, sh4], 5.2.4-1 [hppa]) [debports]
COIN-OR solver for mixed-integer linear programs
coinor-libsymphony3 (5.5.6-1)
COIN-OR solver for mixed-integer linear programs (shared libraries)
coinor-symphony (5.5.6-1)
COIN-OR solver for mixed-integer linear programs
complearn-gui (1.0.7-1) [debports]
interactive 3d data mining tool and demo for universal machine learning
complearn-tools (1.1.5-1) [debports]
complearn machine-learning command-line utilities
concavity (0.1-2)
predictor of protein ligand binding sites from structure and conservation
condor (7.8.8~dfsg.1-2.1 [alpha], 7.8.2~dfsg.1-1+deb7u1 [sh4]) [debports]
distributed workload management system
conservation-code (20110309.0-3)
protein sequence conservation scoring tool
cp2k (2.5.1-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc], 2.5.0-1 [mips, x32])
Ab Initio Molecular Dynamics
cp2k-data (2.5.1-1)
Ab Initio Molecular Dynamics (data files)
cpl-plugin-amber (4.3.1+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x], 4.2.2+dfsg-1 [powerpcspe])
ESO data reduction pipeline for AMBER
cpl-plugin-amber-calib (4.3.1+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for AMBER
cpl-plugin-fors (4.12.8+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x], 4.11.13+dfsg-1 [powerpcspe])
ESO data reduction pipeline for FORS
cpl-plugin-fors-calib (4.12.8+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for FORS2
cpl-plugin-giraf (2.12.1+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x], 2.11.1+dfsg-3 [powerpcspe, x32])
ESO data reduction pipeline for GIRAFFE
cpl-plugin-giraf-calib (2.12.1+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for GIRAFFE
cpl-plugin-hawki (1.8.14+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x], 1.8.12+dfsg-2 [powerpcspe, x32])
ESO data reduction pipeline for HAWK-I
cpl-plugin-hawki-calib (1.8.14+dfsg-1)
ESO data reduction pipeline calibration data downloader for HAWK-I
cpl-plugin-kmos (1.3.1+dfsg-1)
ESO data reduction pipeline for KMOS
cpl-plugin-kmos-calib (1.3.1+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for KMOS
cpl-plugin-sinfo (2.5.2+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x], 2.4.0+dfsg-3 [powerpcspe, x32])
ESO data reduction pipeline SINFONI
cpl-plugin-sinfo-calib (2.5.2+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for SINFONI
cpl-plugin-uves (5.4.0+dfsg-1)
ESO data reduction pipeline for UVES
cpl-plugin-uves-calib (5.4.0+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for UVES
cpl-plugin-vimos (2.9.14+dfsg-1)
ESO data reduction pipeline for VIMOS
cpl-plugin-vimos-calib (2.9.14+dfsg-1) [contrib]
ESO data reduction pipeline calibration data downloader for VIMOS
cpl-plugin-xsh (2.3.0+dfsg-3)
ESO data reduction pipeline for XSHOOTER
cpl-plugin-xsh-calib (2.3.0+dfsg-3) [contrib]
ESO data reduction pipeline calibration data downloader for XSHOOTER
critterding (1.0-beta12.1-1.2)
Evolving Artificial Life
ctsim (5.2.0-1.1)
Computed tomography simulator
ctsim-help (5.2.0-1.1)
Online help file for CTSim
cufflinks (2.2.0-1) [non-free]
Transcript assembly, differential expression and regulation for RNA-Seq
dans-gdal-scripts (0.23-2+b1 [alpha], 0.23-2 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64], 0.18-1.1 [sh4])
GDAL contributed tools by Geographic Information Network of Alaska
dcmtk (3.6.0-15+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 3.6.0-15 [hppa, m68k, powerpcspe, sparc64, x32], 3.6.0-14 [sh4])
OFFIS DICOM toolkit command line utilities
dialign (2.2.1-6)
Segment-based multiple sequence alignment
dialign-tx (1.0.2-5)
Segment-based multiple sequence alignment
dialign-tx-data (1.0.2-5)
Segment-based multiple sequence alignment (data files)
dicomnifti (2.31.1-1)
converts DICOM files into the NIfTI format
dicompyler (0.4.1-1-2)
radiation therapy research platform
diet-agent (2.8.0-1+b2 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sh4, sparc], 2.8.0-1+b1 [ppc64], 2.8.0-1 [hppa, hurd-i386, powerpcspe, sparc64])
DIET grid middleware - agent
dimbl (0.12-2)
Distributed Memory Based Learner
discosnp (1.2.1-1)
discovering Single Nucleotide Polymorphism from raw set(s) of reads
disulfinder (1.2.11-3)
cysteines disulfide bonding state and connectivity predictor
disulfinder-data (1.2.11-3)
data files for predictor of disulfide bonds in proteins
dnaclust (3-2)
tool for clustering millions of short DNA sequences
doris (4.06~beta2+dfsg-3) [contrib]
Delft object-oriented radar interferometric software
dotur (1.53-2) [debports]
distance based OTU and richness estimation
dozzaqueux (3.33-1)
simulator for chemical mixtures
dozzaqueux-data (3.33-1)
databases for chemical mixtures
drawxtl (5.5-3)
crystal structure viewer
drslib (0.3.0a3-5)
Command-line tools for the Data Reference Syntax library
dsdp (5.8-9.1)
Software for Semidefinite Programming
dssp (2.2.1-2)
protein secondary structure assignment based on 3D structure
dx (1:4.4.4-7 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 1:4.4.4-4+b2 [sh4])
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.4.0-1)
Sample programs for the OpenDX Data Explorer
e00compr (1.0.1-2+b2 [hppa], 1.0.1-2+b1 [hurd-i386], 1.0.1-2 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
A program to read/write Arcinfo compressed E00 files
easychem (0.6-8)
Draw high-quality molecules and 2D chemical formulas
ecaccess (4.0.1-1)
clients to access ECMWF facilities
edfbrowser (1.53-1)
viewer for biosignal storage files such as bdf and edf
edtsurf (0.2009-3)
triangulated mesh surfaces for protein structures
eficas (6.4.0-1-1.1)
Graphical editor for Code Aster command files
elastix (4.7-1 [amd64, i386], 4.5-4 [alpha, powerpcspe, ppc64, x32], 4.4-2 [hppa])
toolbox for rigid and nonrigid registration of images
elk-lapw (2.2.10-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc, sparc64], 2.2.10-1 [powerpcspe], 2.1.25-2 [x32])
All-Electron Density-Functional Electronic Structure Code
elki (0.6.0-2)
Data mining algorithm development framework
elmer (6.1.0.svn.5396.dfsg2-4 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, sparc, x32], 6.1.0.svn.5396.dfsg2-3 [powerpcspe, ppc64, s390x], 6.1.0.svn.5396.dfsg-5 [sh4], 5.5.0.svn.4499.dfsg-1 [hppa])
finite element multiphysics suite - binaries
elmer-common (6.1.0.svn.5396.dfsg2-4)
finite element multiphysics suite - architecture-independent files
embassy-domainatrix (0.1.650-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 0.1.0+20100721-3 [sh4], 0.1.0-1 [m68k])
Extra EMBOSS commands to handle domain classification file
embassy-domalign (0.1.650-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 0.1.0+20100721-3 [sh4], 0.1.0-1 [m68k])
Extra EMBOSS commands for protein domain alignment
embassy-domsearch (1:0.1.650-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 0.1.0++20100721-3 [sh4])
Extra EMBOSS commands to search for protein domains
embassy-phylip (3.69.650-2) [non-free]
EMBOSS conversions of the programs in the phylip package
emboss (6.6.0-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 6.3.1-6 [sh4], 5.0.0-7 [m68k])
european molecular biology open software suite
emboss-data (6.6.0-1)
data files for the EMBOSS package
emboss-explorer (2.2.0-8)
web-based GUI to EMBOSS
emboss-lib (6.6.0-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 6.3.1-6 [sh4], 5.0.0-7 [m68k])
EMBOSS Libraries
engauge-digitizer (5.2-1)
interactively extracts numbers from bitmap graphs or maps
ent (1.1debian-3)
pseudorandom number sequence test program
epigrass (2.3.1-2)
scientific tool for simulations and scenario analysis in network epidemiology
epsilon-bin (0.9.2-2)
Library for wavelet image compression - tools
ergo (3.3.1-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc], 3.2.1-1 [sparc64, x32])
Quantum chemistry program for large-scale calculations
esorex (3.10.2-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x], 3.10-1 [x32], 3.9.0-1 [sh4])
Execution Tool for European Southern Observatory pipelines
esys-particle (2.3-1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390x, sparc], 2.1-4 [ppc64, x32], 2.1-2 [sh4])
Software for particle-based numerical modelling. MPI version.
etsf-io (1.0.3-4+b2 [hurd-i386], 1.0.3-4+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sh4, sparc], 1.0.3-4 [hppa, powerpcspe, ppc64, sparc64, x32])
Binary tools to check, merge and read ETSF files
exonerate (2.2.0-6+b1 [hurd-i386], 2.2.0-6 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
generic tool for pairwise sequence comparison
expeyes (3.1.8-2)
hardware & software framework for developing science experiments
expeyes-clib (3.1.8-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 3.1.7-1 [x32], 3.1.5-3 [sparc64], 3.1.1-2 [powerpcspe])
hardware & software framework for developing science experiments
extrema (4.4.5.dfsg-3+b1 [hurd-i386], 4.4.5.dfsg-3 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
powerful visualization and data analysis tool
fastdnaml (1.2.2-10+b1 [hurd-i386], 1.2.2-10 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix95-3+b1 [hurd-i386], 4.1P-fix95-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
faster version of pedigree programs of Linkage
fastqc (0.10.1+dfsg-2)
quality control for high throughput sequence data
fasttree (2.1.7-1)
phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit (0.0.14-1)
FASTQ/A short nucleotide reads pre-processing tools
fcc (2.8-1)
Script to compile C/C++ programs and link to Fortran libraries
feedgnuplot (1.33-1)
Pipe-oriented frontend to Gnuplot
feel++-apps (1:0.98.0-beta.1-1)
A library for the finite element method
ffindex (0.9.9.3-1)
simple index/database for huge amounts of small files
figtree (1.4-2)
graphical phylogenetic tree viewer
filo (1.1+2011123001.1)
FILe and stream Operations
fitgcp (0.0.20130418-1)
fitting genome coverage distributions with mixture models
fitsverify (4.17-1)
FITS File Format-Verification Tool
fityk (1.2.1-0.1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 0.9.8-3 [sh4, sparc64], 0.8.8-1 [m68k])
general-purpose nonlinear curve fitting and data analysis
flexbar (2.40-2 [amd64, powerpc, powerpcspe, ppc64, sparc, sparc64, x32], 2.34-1 [i386])
flexible barcode and adapter removal for sequencing platforms
fractalnow (0.8.1-1)
Fast, advanced fractal generator
(1.4.77-1)
Free42 is a re-implementation of the HP-42S calculator
freeaccount (0.7.6-1) [debports]
medical accountancy manager
freecad (0.13.2935-dfsg-1.1+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.13.2935-dfsg-1.1 [hppa, powerpcspe], 0.13.2800-dfsg-1 [sparc64], 0.12.5284-dfsg-7 [sh4])
Extensible Open Source CAx program (alpha)
freecontact (1.0.21-3 [amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sh4, x32], 1.0.21-1 [alpha, powerpcspe, sparc, sparc64])
fast protein contact predictor
freediams (0.9.0-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64], 0.7.6-1 [sh4, x32])
pharmaceutical drug prescription and interaction manager
freefoam (0.1.0+dfsg-1)
programs for Computational Fluid Dynamics (CFD)
freemedforms-common-resources (0.9.0-2)
common data for the FreeMedForms project applications
freemedforms-emr (0.9.0-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64], 0.7.6-1 [sh4, x32])
electronic medical record manager
freemedforms-emr-resources (0.9.0-2)
data for the FreeMedForms EMR
freemedforms-freedata (0.9.0-2)
free extra-data for the FreeMedForms project
freemedforms-libs (0.9.0-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64], 0.7.6-1 [sh4, x32])
common libs for the FreeMedForms project
freemedforms-project (0.9.0-2)
FreeMedForms project
freemedforms-theme (0.9.0-2)
theme for the FreeMedForms project
frog (0.12.17-7.1+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc, sparc64], 0.12.17-7.1 [hppa, powerpcspe, sh4, x32])
tagger and parser for Dutch language (runtime)
frogdata (0.4-1)
Data files for Frog
fsl (4.1.9-7.2) [non-free]
Metapackage for the latest version of FSL
fsl-4.1 (4.1.9-7.2) [non-free]
analysis tools for FMRI, MRI and DTI brain imaging
fslview (3.0.2+4.1.2-2) [debports]
viewer for (f)MRI and DTI data
ftools-fv (5.3+dfsg-5)
Tool for viewing and editing FITS format files
ftools-pow (5.3+dfsg-5 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc, sparc64], 5.3+dfsg-4 [powerpcspe, x32])
Curve plotting and image display interface tool
funtools (1.4.4+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc, sparc64], 1.4.4-6 [powerpcspe, x32])
Minimal buy-in FITS utility package
fxt-tools (0.2.14-3)
Multithreaded tracing library
g3data (1:1.5.3-2.1)
extract data from scanned graphs
gabedit (2.4.8-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 2.4.7-1 [sh4], 2.4.6-2 [m68k])
graphical user interface to Ab Initio packages
gamgi (0.17-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 0.16.7-1 [sh4])
General Atomistic Modelling Graphic Interface (GAMGI)
gamgi-data (0.17-1)
General Atomistic Modelling Graphic Interface (data)
garlic (1.6-1.1+b1 [hurd-i386], 1.6-1.1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
A visualization program for biomolecules
gasic (0.0.r18-1)
genome abundance similarity correction
gausssum (2.2.6.1-1)
parse and display Gaussian, GAMESS, and etc's output
gbrowse (2.54+dfsg-2)
GMOD Generic Genome Browser
gbrowse-calign (2.54+dfsg-2+b2 [ppc64, sparc64], 2.54+dfsg-2+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390x, sparc, x32], 2.54+dfsg-2 [hppa], 2.54+dfsg-1 [sh4])
CAlign helper
gbrowse-data (2.54+dfsg-2)
Sample data to use GBrowse
gchempaint (0.14.7-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.14.6-1 [powerpcspe], 0.12.8-1 [sh4, sparc64], 0.10.4-1 [m68k])
2D chemical structures editor for the GNOME2 desktop
gcrystal (0.14.7-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.14.6-1 [powerpcspe], 0.12.8-1 [sh4, sparc64], 0.10.4-1 [m68k])
lightweight crystal structures visualizer
gcu-bin (0.14.7-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.14.6-1 [powerpcspe], 0.12.8-1 [sh4, sparc64], 0.10.4-1 [m68k])
GNOME chemistry utils (helper applications)
gcu-plugin (0.14.7-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.14.6-1 [powerpcspe], 0.12.8-1 [sh4, sparc64], 0.10.4-1 [m68k])
GNOME chemistry utils (browser plugin)
gcx (1.3-1.1+b1 [hurd-i386], 1.3-1.1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
astronomical image processing and photometry gtk+ application
gdal-bin (1.10.1+dfsg-5+b1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.10.1+dfsg-3 [powerpcspe], 1.9.0-3.1 [sh4, sparc64], 1.5.4-2 [m68k])
Geospatial Data Abstraction Library - Utility programs
gdis (0.90-5)
molecular and crystal model viewer
gdis-data (0.90-5)
molecular and crystal model viewer (data files)
gdpc (2.2.5-3)
visualiser of molecular dynamic simulations
gdpc-examples (2.2.5-3)
example files for the gdpc program
geant321 (1:3.21.14.dfsg-11)
[Physics] Particle detector description and simulation tool
geant321-data (1:3.21.14.dfsg-11)
[Physics] Data for GEANT 3.21 detector simulator
gelemental (1.2.0-9 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64], 1.2.0-8 [sh4])
Periodic Table viewer
genesis (2.2.1-12) [debports]
general-purpose neural simulator
genometools (1.5.1-2)
versatile genome analysis toolkit
genometools-common (1.5.1-2)
shared data files for GenomeTools
gentle (1.9+cvs20100605+dfsg1-2)
suite to plan genetic cloning
geographiclib-tools (1.35-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.34-1 [x32], 1.21-1 [powerpcspe, sh4, sparc64])
A C++ library to solve some geodesic problems -- tools
geotiff-bin (1.4.0-1)
the GeoTIFF library -- tools
gerris (20110329-dfsg.2-4 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 20110329-dfsg.2-1 [m68k, powerpcspe, sh4, sparc64, x32])
Fluid Flow Solver
gerris-mpi (20110329-dfsg.2-4 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 20110329-dfsg.2-1 [m68k, powerpcspe, sh4, sparc64, x32])
Fluid Flow Solver
getdata (0.2-1)
management of external databases
gff2aplot (2.0-7)
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-4)
produces PostScript graphical output from GFF-files
ghkl (4.0.3-4+b1 [hurd-i386], 4.0.3-4 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32])
diffractometer computation control application
giira (0.0.20140210-1)
RNA-Seq driven gene finding incorporating ambiguous reads
ginkgocadx (3.6.0.1228.33+dfsg-1)
Medical Imaging Software and complete DICOM Viewer
glam2 (1064-3+b2 [hppa], 1064-3 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
gapped protein motifs from unaligned sequences
gliese (3.0.95-2) [non-free]
stellar data set from the Third Catalogue of Nearby Stars
gmap (2013-07-20-1) [non-free]
spliced and SNP-tolerant alignment for mRNA and short reads
gmt (4.5.12-1 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 4.5.11-1 [alpha, powerpcspe, sh4, sparc64, x32], 4.5.7-2 [m68k])
Generic Mapping Tools
gnuhealth (2.4.1-2)
Electronic Medical Record and Hospital Information System
gnuhealth-client (2.4.1-2)
Electronic Medical Record and Hospital Information System - Client
gnuhealth-server (2.4.1-2)
Electronic Medical Record and Hospital Information System - Server
gofigure2 (0.9.0-3 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc], 0.9.0-2 [x32])
Tool for visualizing, processing and analysing of bioimages
gperiodic (2.0.10-7)
periodic table application
gpiv (0.6.1-2.1+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, sparc], 0.6.1-2.1 [hppa, m68k, mips, mipsel, powerpcspe, s390x, sparc64], 0.6.1-2 [sh4])
GUI program for Particle Image Velocimetry
gpiv-mpi (0.6.1-2.1+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, sparc], 0.6.1-2.1 [hppa, m68k, mips, mipsel, powerpcspe, s390x, sparc64], 0.6.1-2 [sh4])
GUI program for Particle Image Velocimetry - MPI version
gpivtools (0.6.0-3+b3 [ppc64], 0.6.0-3+b2 [hurd-i386], 0.6.0-3+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 0.6.0-3 [hppa, m68k, mips, mipsel, powerpcspe, s390x, sh4, sparc64])
command line programs for Particle Image Velocimetry
gpivtools-mpi (0.6.0-3+b3 [ppc64], 0.6.0-3+b2 [hurd-i386], 0.6.0-3+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 0.6.0-3 [hppa, m68k, mips, mipsel, powerpcspe, s390x, sh4, sparc64])
command line programs for Particle Image Velocimetry - MPI version
gpx2shp (0.71.0-1)
convert GPS or GPX file to ESRI Shape file
gr-fcdproplus (0.0.1.2.1edbe52-2 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc], 0.0.1.1.2c80be-3 [powerpcspe])
Funcube Dongle Pro Plus controller for GNU Radio
grass (6.4.3-3 [all], 6.4.0~rc3-3 [m68k])
Geographic Resources Analysis Support System (GRASS GIS)
grass-core (6.4.3-3+b1 [armel, i386], 6.4.3-3 [alpha, amd64, armhf, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc], 6.4.2-2 [sh4])
GRASS GIS core components
grass-gui (6.4.3-3+b1 [armel, i386], 6.4.3-3 [alpha, amd64, armhf, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc], 6.4.2-2 [sh4])
GRASS GIS graphical user interfaces
gri (2.12.23-7 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sparc, sparc64], 2.12.23-6 [powerpcspe, sh4])
a language for scientific illustration
grinder (0.5.3-3)
Versatile omics shotgun and amplicon sequencing read simulator
gromacs (4.6.5-1+b1 [amd64, ppc64], 4.6.5-1 [alpha, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390x, sparc], 4.6.3-2 [sh4, x32], 4.5.5-2 [hurd-i386])
Molecular dynamics simulator, with building and analysis tools
gromacs-data (4.6.5-1)
GROMACS molecular dynamics sim, data and documentation
gromacs-mpich (4.6.5-1+b1 [amd64, ppc64], 4.6.5-1 [alpha, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390x, sparc], 4.6.3-2 [sh4, x32], 4.5.5-2 [hurd-i386])
Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi (4.6.5-1+b1 [amd64, ppc64], 4.6.5-1 [alpha, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, powerpcspe, sparc], 4.5.5-2 [hurd-i386])
Molecular dynamics sim, binaries for OpenMPI parallelization
gvb (1.2.1-1.1)
visual simulator of 1 and 2-dimensional vibrations
gwyddion (2.36-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 2.35-1 [x32], 2.34-3 [powerpcspe], 2.34-1 [sparc64], 2.33-1 [sh4], 2.32-2 [m68k])
Scanning Probe Microscopy visualization and analysis tool
gwyddion-common (2.36-1)
architecture-independent files for Gwyddion SPM analysis tool
gwyddion-plugins (2.36-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 2.35-1 [x32], 2.34-3 [powerpcspe], 2.34-1 [sparc64], 2.33-1 [sh4], 2.32-2 [m68k])
plugins for Gwyddion SPM analysis tool
gyoto (0.1.0-2 [alpha, amd64, armel, armhf, hppa, i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 0.0.3-5 [m68k])
General relativistic ray-tracing
h5utils (1.12.1-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 1.10-7+b1 [m68k])
HDF5 files visualization tools
harminv (1.3.1-10)
extraction of complex frequencies and amplitudes from time series
hdf5-helpers (1.8.12+docs-1+b1 [hppa, ppc64], 1.8.12+docs-1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390x, sparc, sparc64], 1.8.11-5 [sh4])
Hierarchical Data Format 5 (HDF5) - Helper tools
hdf5-tools (1.8.12+docs-1+b1 [hppa, ppc64], 1.8.12+docs-1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390x, sparc, sparc64], 1.8.11-5 [sh4])
Hierarchical Data Format 5 (HDF5) - Runtime tools
herwig++ (2.6.0-1)
Multi-purpose event generator for high energy physics
herwig++-data (2.6.0-1)
Herwig++ Data
herwig++-dev (2.6.0-1)
Herwig++ development files
hhsuite (2.0.16-1)
sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data (2.0.16-1)
sensitive protein sequence searching based on HMM-HMM alignment (data)
hidrd (0.2.0-11)
tools for parsing and generating HID report descriptors
hmmer (3.1b1-3)
profile hidden Markov models for protein sequence analysis
hmmer2 (2.3.2-7)
profile hidden Markov models for protein sequence analysis
hmmer2-pvm (2.3.2-7)
HMMER programs with PVM (Parallel Virtual Machine) support
hodie (1.5-1+b1 [hurd-i386], 1.5-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
prints the date in latin
horae (071~svn536-1) [contrib]
interactive graphical processing and analysis of EXAFS data
hpcc (1.4.1-2+b3 [hurd-i386], 1.4.1-2+b2 [armel, sparc], 1.4.1-2+b1 [alpha, amd64, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc], 1.4.1-2 [hppa, powerpcspe, ppc64, s390x, sh4])
HPC Challenge benchmark
htcondor (8.0.5~dfsg.1-1)
distributed workload management system
ics (1.4.0-2) [debports]
Code_Saturne Graphical User Interface
idba (1.1.1-1)
iterative De Bruijn Graph De Novo short read assembler for transcriptome
ifeffit (2:1.2.11d-9.1) [contrib]
Interactive XAFS analysis program
ifrit (3.4.2-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 3.3.4-2+b2 [sh4], 3.3.4-2 [sparc64], 3.2.5-1 [m68k])
powerful tool for visualizing 3-dimensional data sets
igv (2.3.14+dfsg-2) [non-free]
Integrative Genomics Viewer
imagej (1.48s+dfsg-1)
Image processing program inspired by NIH Image
imagevis3d (3.0.0-3)
desktop volume rendering application for large data
imview (1.1.9c-12+b1 [amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.1.9c-12 [alpha, hppa, m68k, powerpcspe, sh4, sparc64, x32])
Image viewing and analysis application
indi (4:3.5.9-2) [debports]
Instrument Neutral Distributed Interface for astronomical devices
indigo-utils (1.1.12-1 [alpha, amd64, armel, armhf, i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x], 1.1.11-2 [sparc], 1.0.0-1 [sh4])
Organic Chemistry Toolkit Utilities
infernal (1.1-1 [amd64, kfreebsd-amd64], 1.1~rc2-1 [x32], 1.0.2-2 [alpha, m68k, ppc64, sh4, sparc64], 1.0.2-1+b101 [powerpcspe], 1.0.2-1 [hppa])
inference of RNA secondary structural alignments
ipig (0.0.r5-1)
integrating PSMs into genome browser visualisations
israndom (1.0.7-3) [debports]
nonclassical randomness test using data compressors
itksnap (2.2.0-1.1)
semi-automatic segmentation of structures in 3D images
jalview (2.7.dfsg-3)
multiple alignment editor
jblas (1.2.3-3 [alpha, amd64, armel, armhf, i386, mips, mipsel, powerpc, powerpcspe, s390x, sparc], 1.2.0-3 [sh4])
fast linear algebra library for Java
jellyfish (1.1.11-1)
count k-mers in DNA sequences
jemboss (6.6.0-1)
graphical user interface to EMBOSS
jmol (12.2.32+dfsg2-1)
Molecular Viewer
julia (0.2.1+dfsg-2)
high-performance programming language for technical computing
kalign (1:2.03+20110620-2+b1 [hurd-i386], 1:2.03+20110620-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Global and progressive multiple sequence alignment
kalzium (4:4.11.3-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc], 4:4.7.4-2 [sh4])
periodic table and chemistry tools
kalzium-data (4:4.11.3-1)
data files for Kalzium
kissplice (2.1.0-1)
Detection of various kinds of polymorphisms in RNA-seq data
klustakwik (2.0.1-1+b1 [hurd-i386], 2.0.1-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
automatic sorting of the samples (spikes) into clusters
kst (2.0.3-1.3)
scientific data plotting tool
kst-data (2.0.3-1.3)
set of data files for kst
kstars (4:4.11.5-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 4:4.11.3-1 [m68k])
desktop planetarium for KDE
kstars-data (4:4.11.5-1)
data files for KStars desktop planetarium
kstars-data-extra-tycho2 (1.1r1-9) [non-free]
Tycho-2 star catalog for KStars
kxterm (20061220+dfsg3-4 [alpha, amd64, armel, armhf, hppa, i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 2006.dfsg.2-2 [m68k])
CERNLIB data analysis suite - KUIP terminal emulator
lammps (0~20140415.git42bb280-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64], 0~20120305.git5d7feb1-1 [sh4])
Molecular Dynamics Simulator
last-align (418-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sparc], 359-1 [powerpcspe, sh4, sparc64, x32])
genome-scale comparison of biological sequences
lbt (1.2.2-5+b1 [hurd-i386], 1.2.2-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
converts from LTL formulas to B├╝chi automata
lhapdf-pdfsets-minimal (5.9.1-3)
Minimal PDF Sets of LHAPDF
libadios-bin (1.6.0-3 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, sparc], 1.6.0-1 [mipsel, s390x, sparc64], 1.5.0-1 [m68k, mips, powerpcspe, sh4, x32])
ADIOS Adaptable IO system for simulations - binaries
libball1.4-data (1.4.2+20140406-1)
Biochemical Algorithms Library
libcamitk3-data (3.2.2-2)
Computer Assisted Medical Intervention Tool Kit - data
libcassie1 (1.0.1+dfsg-1)
library implementating search algorithms
libclassad3 (7.8.8~dfsg.1-2.1 [alpha], 7.8.2~dfsg.1-1+deb7u1 [sh4]) [debports]
Condor classads expression language - runtime library
libgeotiff-epsg (1.4.0-1) [non-free]
GeoTIFF library -- EPSG Geodetic Parameter Dataset
libghemical-data (3.0.0-2)
Molecular Modelling Library (data files)
libgnuradio-fcdproplus0 (0.0.1.2.1edbe52-2 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc], 0.0.1.1.2c80be-3 [powerpcspe])
Funcube Dongle Pro Plus controller for GNU Radio
libgpib-bin (3.2.11-2) [debports]
libgpib support applications and configuration
libgrits5 (0.8.1-1)
Grits is a Virtual Globe library
libgyoto0 (0.0.3-5) [debports]
General relativistic geodesic integration and ray-tracing
libgyoto1 (0.1.0-2)
General relativistic geodesic integration and ray-tracing
liblas-bin (1.7.0+dfsg-5 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.7.0+dfsg-2 [powerpcspe], 1.2.1-5.1 [sh4, sparc64])
ASPRS LiDAR data translation toolset
libliggghts2 (2.3.8-1)
Open Source DEM Particle Simulation Software. Shared library
libliggghts3 (3.0.0+repack-1+b1 [ppc64], 3.0.0+repack-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390x, sparc64])
Open Source DEM Particle Simulation Software. Shared library
liblinear-tools (1.8+dfsg-1+b1 [hurd-i386], 1.8+dfsg-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Standalone applications for LIBLINEAR
libncarg-bin (6.1.2-7)
NCAR command-language library - development tools
libncarg-data (6.1.2-7)
NCAR command-language library - Data
libocas-tools (0.93-1+b2 [hppa], 0.93-1+b1 [hurd-i386, powerpcspe], 0.93-1 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc, sparc64, x32])
Standalone applications implementing the OCAS solver
libpwiz-tools (3.0.4624-8.1)
ProteoWizard command line tools
libsilo-bin (4.8-13+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, sparc], 4.8-13 [hppa, mips, mipsel, powerpcspe, s390x, sh4, sparc64, x32])
Utilities to manipulate libsilo files
libsimgrid3.10 (3.10-7)
Toolkit for scalable simulation of distributed applications
libxy-bin (1.3-1)
xylib - utilities
libyade (1.07.0-4 [amd64, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, s390x, sparc], 1.07.0-3 [hurd-i386], 1.05.0-2 [x32], 1.00.0-2 [alpha])
Platform for discrete element modeling. Libraries
liggghts (3.0.0+repack-1+b1 [ppc64], 3.0.0+repack-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390x, sparc64], 2.3.8-1 [sparc], 1.5.1-5 [sh4])
Open Source DEM Particle Simulation Software.
litl-tools (0.1.1+dfsg-4 [alpha, amd64, arm64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 0.1.1+dfsg-3 [hppa, x32])
Lightweight Trace Library - tools
logcentral (2.7-1+b1 [hurd-i386], 2.7-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64])
Logging service for distributed applications
logcentral-tools (2.7-1+b1 [hurd-i386], 2.7-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64])
Logging service for distributed applications
logol (1.7.0-1)
Pattern matching tool using Logol language
logol-bin (1.7.0-1 [amd64, i386, powerpc], 1.6.9-3 [powerpcspe, sparc])
Pattern matching tool using Logol language
loki (2.4.7.4-5)
MCMC linkage analysis on general pedigrees
looptools (2.8-1)
Integral Evaluator of One-loop Feynman Diagram
ltrsift (1.0.2-1)
postprocessing and classification of LTR retrotransposons
ltrsift-examples (1.0.2-1)
example data for LTRsift
lutefisk (1.0.7+dfsg-1)
de novo interpretation of peptide CID spectra
macs (2.0.9.1-1)
Model-based Analysis of ChIP-Seq on short reads sequencers
mafft (7.149-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 7.130-1 [x32])
Multiple alignment program for amino acid or nucleotide sequences
mapsembler2 (2.1.2+dfsg-1)
bioinformatics targeted assembly software
maq (0.7.1-5+b1 [hurd-i386], 0.7.1-5 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
maps short fixed-length polymorphic DNA sequence reads to reference sequences
maqview (0.2.5-6)
graphical read alignment viewer for short gene sequences
massxpert (3.4.1-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 3.4.0-1 [m68k])
linear polymer mass spectrometry software
massxpert-data (3.4.1-1)
linear polymer mass spectrometry software - arch-indep data
matlab-gdf (0.1.2-2) [contrib]
IO library for the GDF -- Matlab interface
maude (2.6-4)
high-performance logical framework
mayavi2 (4.3.1-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc, x32], 4.1.0-1 [powerpcspe], 4.0.0-3+b1 [sh4], 4.0.0-2 [sparc64], 3.1.0-1 [m68k])
scientific visualization package for 2-D and 3-D data
mbt (3.2.10-4)
memory-based tagger-generator and tagger
mbtserver (0.7-3)
Server extensions for the MBT tagger
meep (1.1.1-9 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc], 1.1.1-8 [alpha], 0.10-2+b1 [m68k])
software package for FDTD simulation
meep-lam4 (1.1.1-10)
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpi (0.10-2+b1) [debports]
MIT Electromagnetic Equation Propagation, parallel (mpich) version
meep-mpi-default (1.1.1-10+b2 [ppc64], 1.1.1-10+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 1.1.1-10 [hppa, mips, mipsel, powerpcspe, s390x, sh4])
software package for FDTD simulation, parallel (OpenMPI) version
meep-mpich2 (1.1.1-10+b2 [ppc64], 1.1.1-10 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390x, sh4, sparc])
software package for FDTD simulation, parallel (OpenMPI) version
meep-openmpi (1.1.1-10 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, powerpcspe, ppc64, sparc], 1.1.1-9+b1 [alpha])
software package for FDTD simulation, parallel (OpenMPI) version
melting (4.3.1+dfsg-1)
compute the melting temperature of nucleic acid duplex
melting-gui (4.3.1+dfsg-1)
graphical interface to compute the melting temperature of nucleic acid duplex
merkaartor (0.18.1-3+b3 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.18.1-3 [hppa, hurd-i386, powerpcspe, sh4, sparc64], 0.12-1 [m68k])
map editor for OpenStreetMap.org
metastudent (1.0.11-1)
predictor of Gene Ontology terms from protein sequence
metastudent-data (1.0.1-2)
predictor of Gene Ontology terms from protein sequence - data files
metastudent-data-2 (1.0.0-1)
predictor of Gene Ontology terms from protein sequence - data #2
mgltools-bhtree (1.5.7~rc1~cvs.20130519-1) [non-free]
Bhtree library extension module
mgltools-cadd (1.5.7~rc1~cvs.20130519-2) [non-free]
Computer Aided Drug Discovery (CADD) Pipeline
mgltools-cmolkit (1.5.7~rc1~cvs.20130519-1) [non-free]
Python classes to interpret trajectories of Gromacs
mgltools-dejavu (1.5.7~rc1~cvs.20130519-1) [non-free]
visualization of 3D geometry using the OpenGL with Python
mgltools-geomutils (1.5.7~rc1~cvs.20130519-1) [non-free]
Python library for geometric analyses
mgltools-mglutil (1.5.7~rc1~cvs.20130519-1) [non-free]
Molecular Graphics Laboratory utility collection
mgltools-molkit (1.5.7~rc1~cvs.20130519-1) [non-free]
Python classes to read and manipulate molecules
mgltools-networkeditor (1.5.7~rc1~cvs.20130519-1) [non-free]
Python GUI library for the editing of networks
mgltools-opengltk (1.5.7~rc1~cvs.20130519-1) [non-free]
Opengltk Python extension
mgltools-pmv (1.5.7~rc1~cvs.20130519-2) [non-free]
Python-based Molecular Viewer
mgltools-pmv-test (1.5.7~rc1~cvs.20130519-2) [non-free]
Python-based Molecular Viewer (functionality tests)
mgltools-pyautodock (1.5.7~rc1~cvs.20130519-1) [non-free]
Python implementation of autodock
mgltools-pybabel (1.5.7~rc1~cvs.20130519-1) [non-free]
molecular structure file access and interpretation
mgltools-pyglf (1.5.7~rc1~cvs.20130519-1) [non-free]
GLF library Python extension to write text in OpenGL
mgltools-scenario2 (1.5.7~rc1~cvs.20130519-1) [non-free]
Python-based viewer of molecular structures
mgltools-sff (1.5.7~rc1~cvs.20130519-2) [non-free]
Simple Force Field for Python
mgltools-support (1.5.7~rc1~cvs.20130519-1) [non-free]
Update mechanism of MGLTools
mgltools-symserv (1.5.7~rc1~cvs.20130519-1) [non-free]
Symetry server
mgltools-utpackages (1.5.7~rc1~cvs.20130519-1) [non-free]
UT Austin software Python extensions
mgltools-viewerframework (1.5.7~rc1~cvs.20130519-1) [non-free]
ViewerFramework supports building visualization applications
mgltools-vision (1.5.7~rc1~cvs.20130519-1) [non-free]
Python-based Visual Programming Environment
mgltools-visionlibraries (1.5.7~rc1~cvs.20130519-1) [non-free]
Extensions for Python-based Visual Programming Environment
mgltools-volume (1.5.7~rc1~cvs.20130519-1) [non-free]
Volume rendering Python package
mgltools-webservices (1.5.7~rc1~cvs.20130519-1) [non-free]
webservices for components of autodocktools
mia-tools (2.0.13-1)
Command line tools for gray scale image processing
mia-viewit (1.0.0-1+b1 [amd64, i386, powerpc, ppc64], 1.0.0-1 [mips])
Viewer program for 3D data sets created by using MIA
mialmpick (0.2.10-1)
Tools for landmark picking in 3D volume data sets
microbiomeutil (20101212+dfsg-1)
Microbiome Analysis Utilities
microbiomeutil-data (20101212+dfsg-1)
Reference 16S sequences and NAST-alignments used by microbiomeutil tools
microhope (3.1.8-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 3.1.7-1 [x32], 3.1.5-3 [sparc64])
hardware & software framework to learn microcontrollers
minc-tools (2.2.00-3)
MNI medical image format tools
minia (1.6088-1)
short-read biological sequence assembler
minisat (1:2.2.1-4)
Fast and lightweight SAT solver
minisat+ (1.0-2+b1 [hurd-i386], 1.0-2 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
solver for pseudo-Boolean constraints
minisat2 (1:2.2.1-4)
Transitional package for minisat
minisat2
virtual package provided by minisat
mipe (1.1-4)
Tools to store PCR-derived data
mira-assembler (4.0-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc, x32], 3.9.18-1+b2 [sh4], 3.9.18-1 [powerpcspe, sparc64])
Whole Genome Shotgun and EST Sequence Assembler
mira-examples (4.0-1)
files to experiment with the mira assembler
mitools (1.8.5-2 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.8.4-1 [sh4], 1.8.1-3 [sparc64])
view, convert and perform basic maths with medical image datasets
mldemos (0.5.1-3+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, ppc64, s390x, sparc], 0.5.1-3 [hppa, m68k, mipsel, powerpcspe, sh4, sparc64])
Machine Learning Demos (MLDemos) with Visualization
mlv-smile (1.47-3)
Find statistically significant patterns in sequences
mmass (5.5.0-2)
Mass spectrometry tool for proteomics
mmass-modules (5.5.0-2)
Mass spectrometry tool for proteomics - extension modules
mn-fit (5.13-4) [debports]
interactive analysis package for fitting data and histograms
mobyle (1.5.1+dfsg-1)
Web portal that provides web forms for command-line software
mobyle-programs (5.1.1-1)
Program descriptions for the mobyle portal
mobyle-tutorials (1.5.0-1)
program tutorials for the mobyle portal
mobyle-utils (1.5.1+dfsg-1)
binary tools used by Mobyle
molds (0.3.0-3 [amd64, i386, kfreebsd-amd64, kfreebsd-i386, powerpc], 0.2.0-1 [ppc64])
Semi-empirical electronic structure and molecular dynamics
mona (1.4-13-3+b1 [hurd-i386], 1.4-13-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
theorem prover based on automata
montecarlo-base (20061220+dfsg3-3)
[Physics] Common files for CERNLIB Monte Carlo libraries
montecarlo-data (20061220+dfsg3-3)
[Physics] data for CERNLIB Monte Carlo libraries
mopac7-bin (1.15-6)
Semi-empirical Quantum Chemistry Library (binaries)
morse-simulator (1.2-2+b1 [ppc64], 1.2-2 [alpha, amd64, armel, armhf, hppa, i386, m68k, mips, mipsel, powerpc, s390x, sparc, x32], 1.2-1 [powerpcspe, sh4, sparc64], 1.1.1-1 [hurd-i386, kfreebsd-amd64, kfreebsd-i386])
Multi-OpenRobot Simulation Engine
morse-simulator-data (1.2-2)
Multi-OpenRobot Simulation Engine
mothur (1.33.3+dfsg-1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, sparc], 1.33.0+dfsg-1 [sparc64], 1.24.1-1 [m68k, sh4, x32])
sequence analysis suite for research on microbiota
mothur-mpi (1.33.3+dfsg-1)
mpi-enabled binary for mothur
mpb (1.4.2-18+b2 [hurd-i386, ppc64], 1.4.2-18+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 1.4.2-18 [hppa, m68k, mips, mipsel, powerpcspe, s390x, sh4, sparc64, x32])
MIT Photonic-Bands
mpb-mpi (1.4.2-18+b2 [hurd-i386, ppc64], 1.4.2-18+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 1.4.2-18 [hppa, m68k, mips, mipsel, powerpcspe, s390x, sh4, sparc64, x32])
MIT Photonic-Bands, parallel (mpich) version
mpqc (2.3.1-16+b1 [ppc64], 2.3.1-16 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390x, sparc, sparc64, x32], 2.3.1-11 [sh4])
Massively Parallel Quantum Chemistry Program
mpqc-openmpi (2.3.1-16)
Massively Parallel Quantum Chemistry Program (OpenMPI transitional package)
mpqc-support (2.3.1-16+b1 [ppc64], 2.3.1-16 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390x, sparc, sparc64, x32], 2.3.1-11 [sh4])
Massively Parallel Quantum Chemistry Program (support tools)
mrbayes (3.2.2+dfsg-1+b1 [ppc64], 3.2.2+dfsg-1 [alpha, amd64, armel, armhf, i386, mips, mipsel, powerpc, powerpcspe, s390x, sh4, sparc, x32], 3.1.2-2 [sparc64])
Bayesian Inference of Phylogeny
mrbayes-mpi (3.2.2+dfsg-1+b1 [ppc64], 3.2.2+dfsg-1 [alpha, amd64, armel, armhf, i386, mips, mipsel, powerpc, powerpcspe, s390x, sh4, sparc, x32], 3.1.2-2 [sparc64])
Bayesian Inference of Phylogeny - mpi version
mriconvert (1:2.0.7-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1:2.0.7-1 [powerpcspe, x32])
medical image file conversion utility
mricron (0.20130828.1~dfsg.1-1 [amd64, armel, i386], 0.20120505.1~dfsg.1-1 [armhf, powerpc, sparc])
magnetic resonance image conversion, viewing and analysis
mricron-data (0.20130828.1~dfsg.1-1)
data files for MRIcron
mrpt-apps (1:1.0.2-1 [amd64, i386, powerpc, powerpcspe, ppc64, s390x, sparc], 1:1.0.1-1 [armel, mips], 1:1.0.0-1 [armhf, mipsel], 1:0.9.5svn2563-1 [alpha, sh4])
Mobile Robot Programming Toolkit - Console and GUI applications
mrpt-libs (1:0.9.5svn2563-1) [debports]
Mobile Robot Programming Toolkit - All the libraries
mrs (6.0.4+dfsg-1+b1)
Information Retrieval System for Biomedical databanks
mrtrix (0.2.12-1 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc, x32], 0.2.11-1 [alpha, powerpcspe, sh4, sparc64])
diffusion-weighted MRI white matter tractography
mssstest (3.0-3) [non-free]
Normalisation of disease scores for patients with Multiple Sclerosis
mummer (3.23~dfsg-2)
Efficient sequence alignment of full genomes
muscle (1:3.8.31-1)
Multiple alignment program of protein sequences
music-bin (1.0.7-1.2+b1 [alpha, amd64, armel, armhf, i386, powerpc, ppc64, sparc], 1.0.7-1.2 [mips, mipsel, powerpcspe, sparc64])
Multi-Simulation Coordinator for MPI -- Utilities
mustang (3.2.1-3+b1 [hurd-i386], 3.2.1-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
multiple structural alignment of proteins
mustang-testdata (3.2.1-3)
multiple structural alignment of proteins, test data
nast-ier (20101212+dfsg-1)
NAST-based DNA alignment tool
nautic (1.5-1)
computation of observer position in astro-navigation
ncbi-blast+ (2.2.28-2+b2 [hurd-i386], 2.2.28-2 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
next generation suite of BLAST sequence search tools
ncbi-blast+-legacy (2.2.28-2)
NCBI Blast legacy call script
ncbi-epcr (2.3.12-1-1)
Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-rrna-data (6.1.20120620-7)
large rRNA BLAST databases distributed with the NCBI toolkit
ncbi-seg (0.0.20000620-1)
tool to mask segments of low compositional complexity in amino acid sequences
ncbi-tools-bin (6.1.20120620-7)
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20120620-7)
NCBI libraries for biology applications (X-based utilities)
ncl-ncarg (6.1.2-7)
NCAR Command Language and NCAR graphics
nco (4.4.2-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc], 4.0.9-1+b2 [sh4], 4.0.9-1 [sparc64, x32])
Command-line operators to analyze netCDF files
ncoils (2002-4)
coiled coil secondary structure prediction
ncview (1.93g-1+b3 [armel, hurd-i386, i386], 1.93g-1+b2 [alpha, amd64, hppa, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, sh4, sparc], 1.93g-1+b1 [armhf, s390x, sparc64], 1.93g-1 [m68k, powerpcspe, ppc64, x32])
A X11 visual browser for NetCDF format files
necpp (1.5.0+cvs20101003-2.2 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.5.0+cvs20101003-2.1 [powerpcspe, sh4], 1.3.0+cvs20090101-1 [m68k])
NEC2 Evolution Antenna Modelling System
neobio (0.0.20030929-1.1)
computes alignments of amino acid and nucleotide sequences
netcdf-bin (1:4.1.3-7)
Programs for reading and writing NetCDF files
nexus-tools (4.3.2-svn1921-1 [alpha, amd64, armel, armhf, i386, mips, mipsel, powerpc, ppc64, s390x], 4.3.2-svn1919-1 [powerpcspe, sparc], 4.2.1-svn1614-1+b1 [sh4])
NeXus scientific data file format - applications
nifti2dicom (0.4.7-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc], 0.4.6-2 [powerpcspe, ppc64], 0.4.6-1 [x32])
convert 3D medical images to DICOM 2D series
nifti2dicom-data (0.4.7-2)
data files for nifti2dicom
njplot (2.4-2+b1 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 2.4-2 [alpha, hppa, m68k, powerpcspe, sh4, sparc64, x32])
phylogenetic tree drawing program
node-sphericalmercator (1.0.1-2)
Spherical Mercator projection support for NodeJS
node-srs (0.3.2+ds1-1+b1)
spatial reference library for Node.js
norsnet (1.0.17-1)
tool to identify unstructured loops in proteins
norsp (1.0.6-1)
predictor of non-regular secondary structure
numdiff (5.8.1-1)
Compare similar files with numeric fields
nwchem (6.3+r1-1+b2 [ppc64], 6.3+r1-1+b1 [amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 6.3+r1-1 [hppa, mips, mipsel, powerpcspe, s390x, x32], 6.3-3 [sparc64], 6.1-6 [alpha])
High-performance computational chemistry software
nwchem-data (6.3+r1-1)
High-performance computational chemistry software (data files)
oar-admin (2.5.2-4.1)
OAR batch scheduler administration tools package
oar-api (2.5.2-4.1)
transitional dummy package
oar-common (2.5.2-4.1)
OAR batch scheduler common package
oar-node (2.5.2-4.1)
OAR batch scheduler node package
oar-restful-api (2.5.2-4.1)
OAR RESTful API
oar-server (2.5.2-4.1)
OAR batch scheduler server package
oar-server-mysql (2.5.2-4.1)
OAR batch scheduler MySQL server backend package
oar-server-pgsql (2.5.2-4.1)
OAR batch scheduler PostgreSQL server backend package
oar-user (2.5.2-4.1)
OAR batch scheduler user package
oar-user-mysql (2.5.2-4.1)
OAR batch scheduler MySQL user backend package
oar-user-pgsql (2.5.2-4.1)
OAR batch scheduler PostgreSQL user backend package
oar-web-status (2.5.2-4.1)
OAR batch scheduler visualization tool package
oasis3 (3.3.beta.dfsg.1-8+b3 [hurd-i386, ppc64], 3.3.beta.dfsg.1-8+b2 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 3.3.beta.dfsg.1-8+b1 [mips, mipsel, s390x, sh4], 3.3.beta.dfsg.1-8 [hppa, powerpcspe, sparc64, x32])
Coupler for exchanging fields between components of Earth system models
oasis3-examples (3.3.beta.dfsg.1-8+b3 [hurd-i386, ppc64], 3.3.beta.dfsg.1-8+b2 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 3.3.beta.dfsg.1-8+b1 [mips, mipsel, s390x, sh4], 3.3.beta.dfsg.1-8 [hppa, powerpcspe, sparc64, x32])
Example models for the OASIS climate model coupler
obdgpslogger (0.16-1.2+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc], 0.16-1.2 [hppa, hurd-i386, m68k, powerpcspe, ppc64, sh4, sparc64, x32])
suite of tools to log OBDII and GPS data
objcryst-fox (1.9.6.0-2+b1 [hurd-i386], 1.9.6.0-2 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Free Objects for Xtallography
oce-draw (0.15-4 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.15-3 [sh4, sparc64, x32], 0.12-4 [powerpcspe])
OpenCASCADE Community Edition CAE platform shared library
octave-biosig (1.3.0-2+b2 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.3.0-2+b1 [alpha, powerpcspe], 1.3.0-2 [hppa, sh4, sparc64, x32])
Octave bindings for BioSig library
octave-gdf (0.1.2-2+b2 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc], 0.1.2-2+b1 [alpha], 0.1.2-2 [hppa, powerpcspe, sparc64, x32])
IO library for the GDF -- Octave interface
octave-lhapdf (5.9.1-3+b1 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 5.9.1-3 [alpha, hppa, x32], 5.8.9-1 [sparc64])
Octave Bindings for LHAPDF
octave-psychtoolbox-3 (3.0.11.20131230.dfsg1-1+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x, sparc], 3.0.11.20131230.dfsg1-1 [alpha, powerpcspe, ppc64], 3.0.11.20131017.dfsg1-3 [sh4, sparc64], 3.0.9+svn2579.dfsg1-1 [x32])
toolbox for vision research -- Octave bindings
odin (1.8.5-2 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.8.4-1 [sh4], 1.8.1-3 [sparc64])
develop, simulate and run magnetic resonance sequences
ogdi-bin (3.2.0~beta2-7+b1 [hurd-i386], 3.2.0~beta2-7 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Open Geographic Datastore Interface Library -- utilities
openbabel (2.3.2+dfsg-1.1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 2.3.2+dfsg-1+b2 [sh4], 2.3.2+dfsg-1+b1 [sparc64], 2.3.2+dfsg-1 [m68k])
Chemical toolbox utilities (cli)
openbabel-gui (2.3.2+dfsg-1.1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 2.3.2+dfsg-1+b2 [sh4], 2.3.2+dfsg-1+b1 [sparc64], 2.3.2+dfsg-1 [m68k])
Chemical toolbox utilities (graphical user interface)
opencaster (3.2.2+dfsg-1+b2 [hppa], 3.2.2+dfsg-1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
MPEG2 transport stream data generator and packet manipulator
openmeeg-tools (2.0.0.dfsg-5.1)
openmeeg library -- command line tools
openms (1.11.1-3)
package for LC/MS data management and analysis
openms-common (1.11.1-3)
package for LC/MS data management and analysis - shared data
openmx (3.7.6-1+b1 [ppc64], 3.7.6-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390x, sh4, sparc, sparc64, x32])
package for nano-scale material simulations
openmx-data (3.7.6-1)
package for nano-scale material simulations (data)
openrocket (14.03)
Model Rocket Simulator
opensesame (0.27.4-2)
graphical experiment builder for the social sciences
openturns-examples (1.3-2 [alpha, amd64, armel, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, s390x, sparc], 1.3-1 [armhf, x32], 1.2-2 [hppa, powerpcspe, sparc64], 1.0-4 [sh4])
examples of OpenTURNS functionalities
openturns-validation (1.3-2)
validation files for OpenTURNS
openuniverse (1.0beta3.1+dfsg-3+b1 [hurd-i386], 1.0beta3.1+dfsg-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
3D Universe Simulator
openuniverse-common (1.0beta3.1+dfsg-3)
3D Universe Simulator data files
openwalnut-modules (1.3.1+hg5849-1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc], 1.2.5-1 [sh4])
Loaders, algorithms and visualization modules for OpenWalnut
openwalnut-qt4 (1.3.1+hg5849-1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc], 1.2.5-1 [sh4])
Qt based user interface for OpenWalnut
opj2dat (20080225-2.1+b1 [hurd-i386], 20080225-2.1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
OriginLab Origin project files to data files converter
optgeo (2.21-1)
simulator for geometrical optics
opticalraytracer (3.2-1.1)
Virtual lens design workshop
origami (0.7.4-1)
command-line management tool for Folding @ Home clients
orthanc (0.7.3+dfsg-1 [alpha, amd64, armel, armhf, i386, mipsel, powerpc], 0.7.2-1 [mips, powerpcspe, sh4])
RESTful DICOM server for healthcare and medical research
ossim-core (1.8.16-2 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x], 1.8.16-1 [sparc], 1.7.21-4 [powerpcspe, sh4], 1.7.21-3 [sparc64])
The OSSIM core utilities
otf-trace (1.12.4+dfsg-3+b1 [ppc64], 1.12.4+dfsg-3 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390x, sh4, sparc, sparc64, x32])
Open Trace Format support library - development files
ovito (2.3.2~git8178817e-2 [alpha, amd64, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, s390x], 2.3.2~git8178817e-1 [powerpc], 0.9.5-4 [armel, armhf, hppa, ppc64, sparc], 0.9.5-3 [powerpcspe, sh4, sparc64], 0.9.5-2 [x32])
visualization and analysis tool for atomistic simulation data
paje.app (1.98-1+b1 [amd64, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386], 1.98-1 [alpha, armel, armhf, hppa, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 1.97+cvs20080110-2+b1 [m68k])
generic visualization tool (Gantt chart and more)
paml (4.7-1) [non-free]
Phylogenetic Analysis by Maximum Likelihood (PAML)
paraview (4.0.1+dfsg-1+b1 [ppc64], 4.0.1+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc, x32], 4.0.1-1 [powerpcspe], 3.14.1-1 [sh4], 3.8.1-3 [sparc64])
Parallel Visualization Application
parsinsert (1.04-1)
Parsimonious Insertion of unclassified sequences into phylogenetic trees
paw (1:2.14.04.dfsg.2-9+b1 [alpha, amd64, armel, armhf, i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1:2.14.04.dfsg.2-9 [hppa, powerpcspe, sparc64], 1:2.14.04.dfsg.2-8 [sh4, x32], 1:2.14.04.dfsg.2-1 [m68k])
Physics Analysis Workstation - a graphical analysis program
paw++ (1:2.14.04.dfsg.2-9+b1 [alpha, amd64, armel, armhf, i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1:2.14.04.dfsg.2-9 [hppa, powerpcspe, sparc64], 1:2.14.04.dfsg.2-8 [sh4, x32], 1:2.14.04.dfsg.2-1 [m68k])
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (1:2.14.04.dfsg.2-9)
Physics Analysis Workstation (common files)
paw-demos (1:2.14.04.dfsg.2-9)
Physics Analysis Workstation examples and tests
pdb2pqr (1.9.0+dfsg-1 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.8+dfsg-1 [alpha, m68k, powerpcspe, sh4, sparc64, x32])
Preparation of protein structures for electrostatics calculations
pegasus-wms (4.0.1+dfsg-8)
Scientific workflow management system for Condor
perlprimer (1.1.21-2)
Graphical design of primers for PCR
php5-gpib (3.2.11-2) [debports]
libgpib PHP5 bindings
phylip (1:3.695-1) [non-free]
package of programs for inferring phylogenies
phyml (2:20120412-2)
Phylogenetic estimation using Maximum Likelihood
picard-tools (1.110-1)
Command line tools to manipulate SAM and BAM files
picosat (954-1)
SAT solver with proof and core support
planets (0.1.13-14)
Gravitation simulation of planetary bodies
plastimatch (1.5.15+dfsg-1+b2 [amd64, i386], 1.5.15+dfsg-1+b1 [armel, armhf, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc], 1.5.15+dfsg-1 [alpha, hppa, powerpcspe, ppc64, x32])
medical image reconstruction and registration
plink (1.07-3+b1 [hurd-i386], 1.07-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
whole-genome association analysis toolset
poa (2.0+20060928-3+b1 [hurd-i386], 2.0+20060928-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Partial Order Alignment for multiple sequence alignment
populations (1.2.33+svn0120106-2.1+b1 [hurd-i386], 1.2.33+svn0120106-2.1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
population genetic software
pp-popularity-contest (1.0.6-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc], 1.0.6-1 [sparc64, x32])
PredictProtein popularity contest
praat (5.3.57+dfsg-1)
program for speech analysis and synthesis
prank (0.0.140110-1)
Probabilistic Alignment Kit for DNA, codon and amino-acid sequences
predictnls (1.0.20-1)
prediction and analysis of protein nuclear localization signals
predictprotein (1.1.01-1)
suite of protein sequence analysis tools
prime-phylo (1.0.11-1+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, sparc], 1.0.11-1 [mips, mipsel, powerpcspe])
bayesian estimation of gene trees taking the species tree into account
primer3 (2.3.6-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc, sparc64, x32], 2.3.5-1 [m68k], 1.1.4-1+b100 [powerpcspe])
Tool to design flanking oligo nucleotides for DNA amplification
proalign (0.603-1)
Probabilistic multiple alignment program
probabel (0.4.3-1 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386], 0.4.2-2 [alpha, mipsel, x32])
Toolset for Genome-Wide Association Analysis
probabel-examples (0.4.3-1)
Example files for ProbABEL
probalign (1.4-3)
multiple sequence alignment using partition function posterior probabilities
probcons (1.12-9+b1 [hurd-i386], 1.12-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
PROBabilistic CONSistency-based multiple sequence alignment
probcons-extra (1.12-9+b1 [hurd-i386], 1.12-9 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Extra programs from the probcons package
proda (1.0-8+b1 [hurd-i386], 1.0-8 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
multiple alignment of protein sequences
profbval (1.0.22-1)
predictor of flexible/rigid protein residues from sequence
profisis (1.0.11-1)
prediction of protein-protein interaction sites from sequence
profnet-bval (1.0.22-1)
neural network architecture for profbval
profnet-chop (1.0.22-1)
neural network architecture for profchop
profnet-con (1.0.22-1)
neural network architecture for profcon
profnet-isis (1.0.22-1)
neural network architecture for profisis
profnet-md (1.0.22-1)
neural network architecture for metadisorder
profnet-norsnet (1.0.22-1)
neural network architecture for norsnet
profnet-prof (1.0.22-1)
neural network architecture for profacc
profnet-snapfun (1.0.22-1)
neural network architecture for snapfun
profphd (1.0.40-1)
secondary structure and solvent accessibility predictor
profphd-net (1.0.22-1)
neural network architecture for profphd
profphd-utils (1.0.10-1)
profphd helper utilities convert_seq and filter_hssp
proftmb (1.1.12-1)
per-residue prediction of bacterial transmembrane beta barrels
proj-bin (4.8.0-2)
Cartographic projection library (tools)
prooftree (0.12-1+b1 [alpha, armhf, mips, mipsel, s390x], 0.12-1 [amd64, armel, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, powerpcspe, ppc64, sh4, sparc, sparc64])
proof-tree visualization for Proof General
psi3 (3.4.0-5)
Quantum Chemical Program Suite
psi4 (4.0~beta5+dfsg-2)
Quantum Chemical Program Suite
psi4-data (4.0~beta5+dfsg-2)
Quantum Chemical Program Suite (data files)
psychopy (1.79.00+git16-g30c9343.dfsg-1)
environment for creating psychology stimuli in Python
psychtoolbox-3-common (3.0.11.20131230.dfsg1-1)
toolbox for vision research -- arch/interpreter independent part
psychtoolbox-3-lib (3.0.11.20131230.dfsg1-1+b1 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x, sparc], 3.0.11.20131230.dfsg1-1 [alpha, powerpcspe, ppc64], 3.0.11.20131017.dfsg1-3 [sh4, sparc64], 3.0.9+svn2579.dfsg1-1 [x32])
toolbox for vision research -- arch-specific parts
pyfai (0.3.5-1+b1 [hurd-i386], 0.3.5-1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
python library for Fast Azimuthal Integration
pyformex (0.8.6-4)
program to create 3D geometry from Python scripts.
pyformex-lib (0.8.6-4+b1 [hurd-i386], 0.8.6-4 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
program to create 3D geometry from Python scripts.
pymca (4.7.1+dfsg-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 4.7.1+dfsg-1 [sh4])
Python applications and toolkit for X-ray fluorescence analysis
pymca-data (4.7.1+dfsg-2)
Architecture independent data files for PyMca
pymol (1.7.0.0-1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 1.6.0.0-1.1 [m68k, sh4], 1.2r2-1.1+b1 [hppa])
Molecular Graphics System
pythia8-data (8.1.80-1)
PYTHIA8 data files
python-expyriment (0.7.0+git34-g55a4e7e-3)
Python library for cognitive and neuroscientific experiments
python-shogun (3.2.0-1)
Large Scale Machine Learning Toolbox
python3-fitbitscraper (0.1-1)
Python library for scraping the FitBit website for data
qfits-tools (6.2.0-6)
FITS manipulation tools
qgis (2.2.0-1)
Geographic Information System (GIS)
qgis-api-doc (2.2.0-1)
QGIS API documentation
qgis-common (2.2.0-1)
QGIS - architecture-independent data
qgis-mapserver (2.2.0-1)
QGIS mapserver
qgis-plugin-globe (2.2.0-1)
OSG globe plugin for QGIS
qgis-plugin-globe-common (2.2.0-1)
OSG globe plugin for QGIS - architecture-independent data
qgis-plugin-grass (2.2.0-1)
GRASS plugin for QGIS
qgis-plugin-grass-common (2.2.0-1)
GRASS plugin for QGIS - architecture-independent data
qgis-providers (2.2.0-1)
collection of data providers to QGIS
qgis-providers-common (2.2.0-1)
collection of data providers to QGIS - architecture-independent files
qgis-sqlanywhere (2.2.0-1)
QGIS sql anywhere plugin and provider
qiime (1.8.0+dfsg-2 [alpha, amd64, armel, armhf, hppa, i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.7.0+dfsg-1+b1 [hurd-i386, kfreebsd-amd64, kfreebsd-i386])
Quantitative Insights Into Microbial Ecology
qmc (0.94-3+b100 [powerpcspe], 0.94-3+b2 [hppa, hurd-i386], 0.94-3+b1 [alpha, i386, m68k, mips, mipsel, powerpc, sparc], 0.94-3 [amd64, arm64, armel, armhf, kfreebsd-amd64, kfreebsd-i386, ppc64, s390x, sh4, sparc64, x32])
Quine McClusky Simplification Tool
qnifti2dicom (0.4.7-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc], 0.4.6-2 [powerpcspe, ppc64], 0.4.6-1 [x32])
convert 3D medical images to DICOM 2D series (gui)
qrisk2 (0.0.r31-1)
cardiovascular disease risk calculator
qsearch-tools (1.0.8-1) [debports]
qsearch machine-learning command-line utilities
qtdmm (0.8.12-2.1) [debports]
GUI for digital multimeter
qthid-fcd-controller (4.1-3)
Funcube Dongle controller
quantum-espresso (5.0.2-5)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite
quantum-espresso-data (5.0.2-5)
Electronic-Structure and Ab-Initio Molecular Dynamics Suite (Documentation)
qutemol (0.4.1~cvs20081111-3+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.4.1~cvs20081111-3 [hppa, powerpcspe, sh4, sparc64, x32])
interactive visualization of macromolecules
raccoon (1.0b-1) [contrib]
preparation of in silico drug screening projects
rasmol (2.7.5.2-2 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 2.7.4.2-5 [m68k])
Visualize biological macromolecules
raster3d (3.0-3-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64], 3.0-2-5 [sh4, x32])
tools for generating images of proteins or other molecules
rate4site (3.0.0-1)
detector of conserved amino-acid sites
raxml (8.0.14-1)
Randomized Axelerated Maximum Likelihood of phylogenetic trees
ray (2.3.0-2+b1 [ppc64], 2.3.0-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, s390x, sh4, sparc, sparc64, x32])
parallel de novo genome assemblies of next-gen sequencing data
ray-extra (2.3.0-2)
Scripts and XSL sheets for post-processing for ray de novo assembler
rdkit-data (201309-1)
Collection of cheminformatics and machine-learning software (data files)
readseq (1-11)
Conversion between sequence formats
reprof (1.0.1-1)
protein secondary structure and accessibility predictor
rivet (1.8.3-1.1)
Robust Independent Validation of Experiment and Theory
rivet-plugins (1.8.3-1.1)
Analysis plugins of Rivet
rivet-plugins-data (1.8.3-1.1)
Data files of Rivet analysis plugins
rivet-plugins-dev (1.8.3-1.1)
Template generator of Rivet analysis plugin
rivet-root-converter (1.8.3-1.1)
Rivet and ROOT file format converter
rnahybrid (2.1.1-2)
Fast and effective prediction of microRNA/target duplexes
robot-player (3.0.2+dfsg-4.1+b2 [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390x, sparc], 3.0.2+dfsg-4.1+b1 [alpha, ppc64], 3.0.2+dfsg-4.1 [hppa, powerpcspe, sparc64], 3.0.2+dfsg-4 [sh4], 2.0.4-3 [m68k])
Networked server for robots and sensors
robot-player-dev (3.0.2+dfsg-4.1)
Networked server for robots and sensors - development package
root-plugin-geom-gdml (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
GDML import/export module for ROOT geometries
root-plugin-geom-geombuilder (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Geometry builder plugin for ROOT
root-plugin-geom-geompainter (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Geometry painter plugin for ROOT
root-plugin-graf2d-asimage (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
AfterImage plugin for ROOT
root-plugin-graf2d-qt (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Graf2d Qt plugin for ROOT
root-plugin-graf2d-x11 (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
X window system plugin for ROOT
root-plugin-graf3d-x3d (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
X 3D plugin for ROOT
root-plugin-gui-fitpanel (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
GUI element for fits plugin for ROOT
root-plugin-gui-guibuilder (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
GUI editor plug-in for ROOT
root-plugin-gui-qt (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Qt plugin for ROOT
root-plugin-gui-sessionviewer (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
GUI to browse an interactive PROOF session
root-plugin-hist-hbook (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Hbook plugin for ROOT
root-plugin-hist-histpainter (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Histogram painter plugin for ROOT
root-plugin-hist-spectrumpainter (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Spectrum painter plugin for ROOT
root-plugin-io-sql (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
SQL plugin for ROOT
root-plugin-io-xml (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
XML reader plugin for ROOT
root-plugin-math-fftw3 (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
FFTw plugin for ROOT
root-plugin-math-fumili (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Fumili plugin for ROOT
root-plugin-math-minuit2 (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Minuit version 2 plugin for ROOT
root-plugin-montecarlo-pythia8 (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Pythia version 8 plugin for ROOT
root-plugin-net-globus (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Globus plugin for ROOT
root-plugin-net-krb5 (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Kerberos (version 5) plugin for ROOT
root-plugin-sql-mysql (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
MySQL client plugin for ROOT
root-plugin-sql-odbc (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
ODBC plugin for ROOT
root-plugin-sql-pgsql (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
PostgreSQL client plugin for ROOT
root-plugin-tree-treeviewer (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
GUI to browse a ROOT tree
root-system (5.34.14-1.1)
metapackage to install all ROOT packages
root-system-bin (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Numerical data analysis framework - general applications
root-system-common (5.34.14-1.1)
Common files for ROOT
root-system-proofd (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
Parallel ROOt Facility - distributed, parallel computing
root-system-rootd (5.34.14-1.1 [alpha, amd64], 5.34.14-1 [armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, sparc])
ROOT remote file server
rtax (0.984-2)
Classification of sequence reads of 16S ribosomal RNA gene
saga (2.1.0+dfsg-1+b3 [amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 2.1.0+dfsg-1+b2 [alpha, hurd-i386], 2.1.0+dfsg-1 [hppa, powerpcspe], 2.0.8+dfsg-4 [sh4, sparc64])
System for Automated Geoscientific Analyses
saint (2.3.4+dfsg-2)
Significance Analysis of INTeractome
salome-kernel (6.5.0-7)
Numerical simulation pre- and post-processor
samtools (0.1.19-1)
processing sequence alignments in SAM and BAM formats
saods9 (7.2+dfsg-4 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 4.0b7-2 [m68k])
Image display tool for astronomy
saods9-blt (7.2+dfsg-4)
BLT subpackage for saods9
saods9-data (7.2+dfsg-4)
Image display tool for astronomy (shared data)
sat4j (2.3.2-1)
Efficient library of SAT solvers in Java
savi (1.4.6-1)
satellite constellation visualisation
sbmltoolbox (4.1.0-1)
libsbml toolbox for octave and matlab
science-astronomy (1.1)
Debian Science Astronomy packages
science-astronomy-dev (1.1)
Debian Science Astronomy-dev packages
science-biology (1.1)
Debian Science Biology packages
science-chemistry (1.1)
Debian Science Chemistry packages
science-config (1.1)
Debian Science Project config package
science-dataacquisition (1.1)
Debian Science data acquisition packages
science-dataacquisition-dev (1.1)
Debian Science data acquisition development packages
science-distributedcomputing (1.1)
Debian Science Distributed Computing packages
science-economics (1.1)
Debian Science Economics packages
science-electronics (1.1)
Debian Science Electronics packages
science-electrophysiology (1.1)
Debian Science packages for Electrophysiology
science-engineering (1.1)
Debian Science Engineering packages
science-engineering-dev (1.1)
Debian Science Engineering-dev packages
science-financial (1.1)
Debian Science financial engineering and computational finance
science-geography (1.1)
Debian Science Geography packages
science-geometry (1.1)
Debian Science geometry packages
science-highenergy-physics (1.1)
Debian Science High Energy Physics packages
science-highenergy-physics-dev (1.1)
Debian Science High Energy Physics development packages
science-imageanalysis (1.1)
Debian Science image analysis packages
science-linguistics (1.1)
Debian Science Linguistics packages
science-logic (1.1)
Debian Science Logic packages
science-machine-learning (1.1)
Debian Science Machine Learning packages
science-mathematics (1.1)
Debian Science Mathematics packages
science-mathematics-dev (1.1)
Debian Science Mathematics-dev packages
science-meteorology (1.1)
Debian Science Meteorology packages
science-meteorology-dev (1.1)
Debian Science Meteorology-dev packages
science-nanoscale-physics (1.1)
Debian Science Nanoscale Physics packages
science-nanoscale-physics-dev (1.1)
Debian Science Nanoscale Physics development packages
science-neuroscience-cognitive (1.1)
Debian Science packages for Cognitive Neuroscience
science-neuroscience-modeling (1.1)
Debian Science packages for modeling of neural systems
science-numericalcomputation (1.1)
Debian Science Numerical Computation packages
science-physics (1.1)
Debian Science Physics packages
science-physics-dev (1.1)
Debian Science Physics-dev packages
science-presentation (1.1)
Debian Science generic tools for presentations
science-psychophysics (1.1)
Debian Science packages for Psychophysics
science-robotics (1.1)
Debian Robotics packages
science-robotics-dev (1.1)
Debian Robotics development packages
science-simulations (1.1)
Debian Science Simulation packages
science-social (1.1)
Debian Science social sciences packages
science-statistics (1.1)
Debian Science Statistics packages
science-tasks (1.1)
Debian Science tasks for tasksel
science-typesetting (1.1)
Debian Science typesetting packages
science-viewing (1.1)
Debian Science data visualisation packages
science-viewing-dev (1.1)
Debian Science development of visualisation applications
seaview (1:4.4.2-1) [non-free]
Multiplatform interface for sequence alignment and phylogeny
seesat5 (0.90.10-1.1) [debports]
a satellite location program
seq-gen (1.3.3-1+b1 [hurd-i386], 1.3.3-1 [amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc]) [non-free]
simulate the evolution of nucleotide or amino acid sequences
seqan-apps (1.4.1-3 [amd64, powerpc, ppc64, s390x], 1.3.1-1 [alpha, armhf, i386, mips, mipsel, powerpcspe, sh4, x32], 1.2-1 [hppa, sparc64])
C++ library for the analysis of biological sequences
seqtk (1.0-1)
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
sextractor (2.19.5+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc], 2.4.4-1 [m68k, sparc64])
Source extractor for astronomical images
shelxle (1.0.661-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 1.0.655-1 [m68k])
graphical user interface for SHELXL
shogun-cmdline (0.10.0-2.1+b1) [debports]
Large Scale Machine Learning Toolbox
shogun-cmdline-static (3.2.0-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 3.1.1-1 [powerpcspe])
Large Scale Machine Learning Toolbox
shogun-elwms (0.10.0-2.1+b1) [debports]
Large Scale Machine Learning Toolbox
shogun-octave (0.10.0-2.1+b1) [debports]
Large Scale Machine Learning Toolbox
shogun-octave-modular (0.10.0-2.1+b1) [debports]
Large Scale Machine Learning Toolbox
shogun-python (0.10.0-2.1+b1) [debports]
Large Scale Machine Learning Toolbox
shogun-python-modular (0.10.0-2.1+b1) [debports]
Large Scale Machine Learning Toolbox
shogun-r (0.10.0-2.1+b1) [debports]
Large Scale Machine Learning Toolbox
sibsim4 (0.20-2)
align expressed RNA sequences on a DNA template
sift (4.0.3b-4) [non-free]
predicts if a substitution in a protein has a phenotypic effect
sigma-align (1.1.3-3+b1 [hurd-i386], 1.1.3-3 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Simple greedy multiple alignment of non-coding DNA sequences
sigviewer (0.5.1+svn556-1+b3 [hurd-i386], 0.5.1+svn556-1+b2 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x], 0.5.1+svn556-1 [hppa, powerpcspe, ppc64, sh4, sparc, sparc64, x32])
GUI viewer for biosignals such as EEG, EMG, and ECG
sim4 (0.0.20121010-1)
tool for aligning cDNA and genomic DNA
simgrid (3.9~rc1-1) [debports]
Toolkit for scalable simulation of distributed applications
simgrid
virtual package provided by libsimgrid-dev
simgrid-java (3.10-7)
Toolkit for scalable simulation of distributed applications
sixpack (1:0.68-1) [contrib]
full-featured package for XAS analysis
skycat (3.1.2+starlink1~b-6 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc, sparc64], 3.1.2+starlink1~b-3 [powerpcspe, x32])
Image visualization and access to catalogs and data for astronomy
slang-xfig (0.2.0~.35-1.1+b1 [hurd-i386], 0.2.0~.35-1.1 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
produce plots and drawings through Xfig's fig2dev in S-Lang
snap (2010-07-28-2)
location of genes from DNA sequence with hidden markov model
snaphu (1.4.2-2) [non-free]
Statistical-Cost, Network-Flow Algorithm for 2D Phase Unwrapping
snp-sites (1.5.0-1)
Binary code for the package snp-sites
soapdenovo (1.05-2)
short-read assembly method to build de novo draft assembly
soapdenovo2 (240+dfsg-1)
short-read assembly method to build de novo draft assembly
spass (3.7-3+b1 [hurd-i386], 3.7-3 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 2.1-4 [m68k])
An automated theorem prover for first-order logic with equality
spatialite-bin (4.1.1-4 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc, sparc64], 3.1.0b-2 [hppa, powerpcspe, sh4, x32])
Geospatial extension for SQLite - tools
spd (1.3.0-1+b1 [hurd-i386], 1.3.0-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Synchrotron image corrections and azimuthal integration
spread-phy (1.0.5+dfsg-1) [contrib]
analyze and visualize phylogeographic reconstructions
squizz (0.99b+dfsg-3)
Converter for genetic sequences and alignments
sra-toolkit (2.3.4-2+dfsg-2)
utilities for the NCBI Sequence Read Archive
sra-toolkit-libs-dev (2.3.4-2+dfsg-2)
Development files for the NCBI SRA Toolkit's libraries
sra-toolkit-libs0 (2.3.4-2+dfsg-2)
Libraries for the SRA Toolkit
ssake (3.8.1-1)
genomics application for assembling millions of very short DNA sequences
ssake-examples (3.8.1-1)
example data for SSAKE, a genomic assembler of short reads
ssystem (1.6-18) [debports]
3D solar system simulator
staden-io-lib-utils (1.13.5-1.1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64], 1.13.5-1 [x32], 1.13.2-3 [sh4], 1.12.4-1 [m68k])
programs for maniuplating DNA sequencing files
stage (2.0.3-2) [debports]
Robot simulation for Player
stardata-common (0.8)
Common framework to manage astronomy packages
starplot (0.95.5-8 [hppa, i386], 0.95.5-7 [alpha, amd64, armel, armhf, hurd-i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
3-dimensional perspective star map viewer
starpu-contrib-examples (1.1.0+dfsg-2) [contrib]
Task scheduler for heterogeneous multicore machines - exs
starpu-examples (1.1.0+dfsg-2+b1 [ppc64], 1.1.0+dfsg-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, s390x, sparc, sparc64], 1.0.5+dfsg-1 [sh4, x32])
Task scheduler for heterogeneous multicore machines - exs
starpu-examples
virtual package provided by starpu-contrib-examples
stellarium (0.12.4-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 0.11.3-1 [m68k])
real-time photo-realistic sky generator
stellarium-data (0.12.4-1)
Stellarium data files
step (4:4.11.5-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 4:4.7.4-2 [sh4])
interactive physical simulator for KDE
stimfit (0.13.15-1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.13.13-1 [powerpcspe], 0.13.2-1 [sh4, sparc64, x32])
Program for viewing and analyzing electrophysiological data
sumo (0.20.0+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.19.0+dfsg-2 [powerpcspe], 0.19.0+dfsg-1 [sparc64], 0.17.1~dfsg-6 [sh4])
Simulation of Urban MObility (SUMO)
survex (1.2.12-1 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.2.11-1 [alpha, m68k, powerpcspe], 1.2.6-4 [sh4, x32], 1.2.2-1 [sparc64])
cave surveying and mapping software
survex-aven (1.2.12-1 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.2.11-1 [alpha, m68k, powerpcspe], 1.2.6-4 [sh4, x32], 1.2.2-1 [sparc64])
sophisticated cave survey viewer for Survex
survex-svxedit (1.2.12-1)
survey data editor for Survex
swarp (2.19.1-1)
resample and co-add together FITS images
swarp
virtual package provided by dwm-tools, suckless-tools
swe-basic-data (1.80.00.0001-1)
basic data files for the libswe package
swe-standard-data (00004-1)
standard data for the Swiss Ephemeris
syrthes (3.4.3-dfsg1-7)
Transient thermal simulations in complex solid geometries
t-coffee (10.00.r1613-1)
Multiple Sequence Alignment
t-coffee-examples (10.00.r1613-1)
annotated examples for the use of T-Coffee
tabix (0.2.6-2)
generic indexer for TAB-delimited genome position files
tandem-mass (1:2013.09.01-1)
mass spectrometry software for protein identification
tcd-utils (20061127-2+b100 [powerpcspe], 20061127-2+b2 [hppa], 20061127-2+b1 [hurd-i386], 20061127-2 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc, sparc64, x32])
convert Tide Constituent Database (TCD) files
terraintool (1.12a-1)
Generates survex format terrain models from SRTM and ASTER data
tessa (0.3.1-6+b3 [hurd-i386], 0.3.1-6+b2 [amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, sparc], 0.3.1-6+b1 [alpha, mips, mipsel, s390x], 0.3.1-6 [hppa, m68k, powerpcspe, sh4, sparc64, x32])
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-6+b3 [hurd-i386], 0.3.1-6+b2 [amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, sparc], 0.3.1-6+b1 [alpha, mips, mipsel, s390x], 0.3.1-6 [hppa, m68k, powerpcspe, sh4, sparc64, x32])
simulation of 3D optical systems using FDTD on MPI clusters
thepeg (1.8.0-1)
Toolkit for High Energy Physics Event Generation
thepeg-gui (1.8.0-1)
Java GUI of ThePEG
thepeg-reference (1.8.0-1)
Code reference of ThePEG
therion (5.3.14-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc, x32], 5.3.12-3 [powerpcspe], 5.3.9-1+b1 [sh4], 5.3.8-2 [sparc64], 0.5.1+nmu1 [m68k])
Cave surveying - 2D and 3D drawing software
therion-viewer (5.3.14-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc, x32], 5.3.12-3 [powerpcspe], 5.3.9-1+b1 [sh4], 5.3.8-2 [sparc64], 0.5.1+nmu1 [m68k])
Cave surveying - 3D viewer for therion models
theseus (2.0.6-1)
superimpose macromolecules using maximum likelihood
tigr-glimmer (3.02-3)
Gene detection in archea and bacteria
timbl (6.4.4-4)
Tilburg Memory Based Learner
timblserver (1.7-4)
Server extensions for Timbl
tm-align (20130511+dfsg-1)
structual alignment of proteins
tophat (2.0.10-1)
fast splice junction mapper for RNA-Seq reads
topp (1.11.1-3 [amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, x32], 1.9.0-4.1 [sparc64])
set of programs implementing The OpenMS Proteomic Pipeline
transcalc (0.14-5+b100 [powerpcspe], 0.14-5+b2 [hppa], 0.14-5+b1 [hurd-i386], 0.14-5 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390x, sh4, sparc, sparc64, x32])
microwave and RF transmission line calculator
transtermhp (2.09-2)
find rho-independent transcription terminators in bacterial genomes
travis (140117-1)
trajectory analyzer and visualizer
tree-ppuzzle (5.2-7+b2 [hurd-i386], 5.2-7+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, sparc], 5.2-7 [mips, mipsel, powerpcspe, sparc64], 5.2-5 [hppa, m68k, sh4])
Parallelized reconstruction of phylogenetic trees by maximum likelihood
tree-puzzle (5.2-7+b2 [hurd-i386], 5.2-7+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, sparc], 5.2-7 [mips, mipsel, powerpcspe, sparc64], 5.2-5 [hppa, m68k, sh4])
Reconstruction of phylogenetic trees by maximum likelihood
treeview (1.1.6.4+dfsg-1) [contrib]
Java re-implementation of Michael Eisen's TreeView
treeviewx (0.5.1+20100823-2)
Displays and prints phylogenetic trees
triangle-bin (1.6-2) [non-free]
High-quality 2-D mesh generator binary programs
trimmomatic (0.32+dfsg-1)
flexible read trimming tool for Illumina NGS data
tunnelx (20140102-2)
Cave Survey drawing software
twms (0.05t-2)
tiny web map service
uc-echo (1.12-6 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 1.12-4 [powerpcspe, sparc64], 1.12-3 [x32])
error correction algorithm designed for short-reads from NGS
ucto (0.5.3-3.1+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc, sparc64], 0.5.3-3.1 [arm64, hppa, powerpcspe, sh4, x32])
Unicode Tokenizer
ugene (1.12.3+dfsg-1) [non-free]
integrated bioinformatics toolkit
ugene-data (1.12.3+dfsg-1) [non-free]
required data for UGENE - integrated bioinformatics toolkit
uhd-host (3.7.0-3 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc], 3.5.5-1 [powerpcspe], 3.5.3-1 [sparc64], 3.4.2-1 [sh4])
universal hardware driver for Ettus Research products
units-filter (3.6-1 [amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, sh4, sparc], 3.5-3 [alpha, kfreebsd-amd64, ppc64, s390x, sparc64, x32])
Parser for expressions concerning physical values
urg-utils (0.8.18-2)
utilities for Hokuyo URG/UTM laser range scanners
v-sim (3.7.1-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 3.7.0-2 [m68k, powerpcspe, sh4, sparc64, x32])
Visualize atomic structures
v-sim-common (3.7.1-1)
Visualize atomic structures (support files)
v-sim-plugins (3.7.1-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 3.7.0-2 [m68k, powerpcspe, sh4, sparc64, x32])
Plugins for V_Sim (a 3D visualization package)
vcftools (0.1.12+dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 0.1.11+dfsg-1 [x32])
Collection of tools to work with VCF files
velvet (1.2.10+dfsg-1)
Nucleic acid sequence assembler for very short reads
velvet-example (1.2.10+dfsg-1)
Example data for the Velvet sequence assembler
veusz (1.20.1-3)
2D scientific plotting application with graphical interface
veusz-helpers (1.20.1-3 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc, x32], 1.15-1 [powerpcspe, sh4, sparc64])
Architecture-specific helper module for Veusz
viewmol (2.4.1-20)
A graphical front end for computational chemistry programs.
visp-images-data (2.8.0-1)
visual servoing library - reference files
vistrails (2.0.alpha~1-3 [all], 2.0.alpha~1-2 [alpha, sh4, sparc64])
Science visualisation workflow toolkit
vmtk (1.0.1-3) [non-free]
the Vascular Modeling Toolkit
volview (3.4+dfsg-1+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sparc], 3.4+dfsg-1 [hppa, hurd-i386, powerpcspe, ppc64, x32])
Advanced volume visualization tool
vowpal-wabbit (7.3-1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 4.1+20100420-1 [hppa])
fast and scalable online machine learning algorithm
voxbo (1.8.5~svn1246-1+b1 [alpha, amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390x, sh4, sparc], 1.8.5~svn1246-1 [hppa, powerpcspe, ppc64, sparc64, x32])
processing, statistical analysis, and display of brain imaging data
wcslib-tools (4.22-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 4.20-2 [x32])
Command line tools utilizing wcslib
wcstools (3.8.7-2)
Handle the WCS of a FITS image
weka (3.6.10-2)
Machine learning algorithms for data mining tasks
wfrog (0.8.2+svn953-1)
Web-based customizable weather station software
wigeon (20101212+dfsg-1)
reimplementation of the Pintail 16S DNA anomaly detection utility
wise (2.4.1-14 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 2.4.1-10 [m68k])
comparison of biopolymers, commonly DNA and protein sequences
xbs (0-8+b100 [powerpcspe], 0-8+b2 [hppa], 0-8+b1 [hurd-i386], 0-8 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc, sparc64, x32])
3-d models and movies of molecules
xcrysden (1.5.53-1)
Crystalline and Molecular Structure Visualizer
xcrysden-data (1.5.53-1)
Crystalline and Molecular Structure Visualizer (Data Files)
xdrawchem (2.0-2)
Chemical structures and reactions editor
xflr5 (6.09.06-2)
analysis tool for airfoils
xfoil (6.97.dfsg-5)
program for the design and analysis of subsonic airfoils
xmakemol (5.16-7)
program for visualizing atomic and molecular systems
xmakemol-gl (5.16-7)
program for visualizing atomic and molecular systems (OpenGL)
xmds (1.6.6-7)
eXtensible Multi-Dimensional Simulator
xmds2 (2.2.0+dfsg1-2)
eXtensible Multi-Dimensional Simulator
xorsa (0.7.0-13) [debports]
tool for Celestial Mechanics investigations
xpa-tools (2.1.15-3)
Tools for seamless communication between Unix programs
xplot (1.19-9+b100 [powerpcspe], 1.19-9+b2 [hppa], 1.19-9+b1 [alpha, hurd-i386, powerpc], 1.19-9 [amd64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, ppc64, s390x, sh4, sparc, sparc64, x32])
simple on-screen x-y column data plotter
xplot-xplot.org (0.90.7.1-2+b100 [powerpcspe], 0.90.7.1-2+b2 [hppa], 0.90.7.1-2+b1 [hurd-i386], 0.90.7.1-2 [alpha, amd64, arm64, armel, armhf, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, ppc64, s390x, sh4, sparc, sparc64, x32])
fast tool to graph and visualize lots of data
xppaut (6.11b+1.dfsg-1+b1 [hurd-i386], 6.11b+1.dfsg-1 [alpha, amd64, arm64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Phase Plane Plus Auto: Solves many kinds of equations
xtide (2.13-1)
provides tide and current predictions
xtide-coastline (20020202-1)
coastline data for xtide
xtide-data (20100529-1)
Harmonics data for xtide
xtide-data-nonfree (20100529-1) [non-free]
Harmonics data for xtide (Canada, Netherlands, Germany and UK)
xyscan (3.31-3+b1 [hurd-i386], 3.31-3 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
data thief for scientists
yade (1.07.0-4 [amd64, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, s390x, sparc], 1.07.0-3 [hurd-i386], 1.05.0-2 [x32], 1.00.0-2 [alpha])
Platform for discrete element modeling
yale (5.0.95-2) [non-free]
stellar data set from the Yale Bright Star Catalog
ygraph (0.16~cvs20090218-1.2+b1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.16~cvs20090218-1.2 [m68k, powerpcspe, sh4, sparc64, x32])
plot and animate data sets
yorick (2.2.03+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, sparc, sparc64], 2.2.02+dfsg-6 [m68k, s390x, sh4, x32])
interpreted language and scientific graphics
yorick-av (0.0.3-2 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc], 0.0.1-2 [hurd-i386, sh4])
write movies from Yorick in various formats
yorick-cubeview (2.2-2)
3D FITS data viewer specialized in spectro-imaging
yorick-curses (0.1-6)
interface to the (n)curses library for the Yorick language
yorick-data (2.2.03+dfsg-1)
interpreted library for the Yorick language
yorick-dev (2.2.03+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, sparc, sparc64], 2.2.02+dfsg-6 [m68k, s390x, sh4, x32])
development files for the Yorick interpreted language
yorick-full (2.2.03+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, sparc, sparc64], 2.2.02+dfsg-6 [m68k, s390x, sh4, x32])
full installation of the Yorick interpreter and add-ons
yorick-gl (1.1+cvs20070922+dfsg-6.1)
OpenGL 3D graphics support for the Yorick language
yorick-gy (0.0.5-1)
GObject introspection and Gtk bindings for Yorick
yorick-gyoto (0.1.0-2 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32], 0.0.3-5 [m68k])
General relativistic geodesic integration for the Yorick language
yorick-hdf5 (0.8.0-4)
Hierarchical Data Format 5 interface for the Yorick language
yorick-imutil (0.5.7-3)
fast image manipulation routines for the Yorick language
yorick-mira (0.9.10+dfsg-1)
optical interferometry image reconstruction within Yorick
yorick-ml4 (0.6.0-3)
Matlab file format support for the Yorick language
yorick-mpeg (0.1-3)
MPEG output support for the Yorick language
yorick-mpy-common (2.2.03+dfsg-1)
Message Passing Yorick (common files)
yorick-mpy-mpich2 (2.2.03+dfsg-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, ppc64, sparc, sparc64], 2.2.02+dfsg-6 [m68k, s390x, sh4, x32])
Message Passing Yorick (MPICH2 build)
yorick-mpy-openmpi (2.2.03+dfsg-1)
Message Passing Yorick (OpenMPI build)
yorick-optimpack (1.3.2+dfsg-1)
optimization of large scale problems for the Yorick language
yorick-soy (1.4.0-3)
sparse matrix operations for the Yorick language
yorick-spydr (0.8.2-3)
FITS image display and simple analysis
yorick-svipc (0.15-1 [alpha, amd64, armel, armhf, hppa, i386, mips, mipsel, powerpc, ppc64, s390x, sparc], 0.14-2+b3 [hurd-i386, kfreebsd-amd64, kfreebsd-i386], 0.14-2 [powerpcspe, sh4, sparc64, x32])
interprocess communication (shared memory...) for Yorick
yorick-yao (5.3.1-1 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64, x32], 4.9.1-2 [sh4])
Yorick-based adaptive optics system simulator
yorick-yeti (6.3.3-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 6.3.3-1 [x32])
utility plugin for the Yorick language
yorick-yeti-fftw (6.3.3-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 6.3.3-1 [x32])
FFT plugin for the Yorick language
yorick-yeti-gsl (6.3.3-2)
dummy transitional package
yorick-yeti-gsl
virtual package provided by yorick-ygsl
yorick-yeti-regex (6.3.3-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 6.3.3-1 [x32])
POSIX regular expressions for the Yorick language
yorick-yeti-tiff (6.3.3-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 6.3.3-1 [x32])
TIFF image format input for the Yorick language
yorick-ygsl (1.1.1-3 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64], 1.1.1-2 [x32])
GSL special functions plugin for the Yorick language
yorick-ynfft (1.0.2-2 [alpha, amd64, armel, armhf, hppa, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sparc, sparc64], 1.0.2-1 [sh4])
nonequispaced fast Fourier transform for Yorick
yorick-yutils (1.5.2-1)
various utilities for the Yorick language
yorick-z (1.2.0+cvs20080115-5)
zlib, jpeg and png support for the Yorick language
z88 (13.0.0+dfsg2-3+b1 [hurd-i386], 13.0.0+dfsg2-3 [alpha, amd64, armel, armhf, hppa, i386, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, powerpcspe, ppc64, s390x, sh4, sparc, sparc64, x32])
Finite Element Analysis Program - runtime
z88-data (13.0.0+dfsg2-3)
Finite Element Analysis Program - data
zalign (0.9.1-1+b1 [alpha, amd64, armel, armhf, hurd-i386, i386, kfreebsd-amd64, kfreebsd-i386, powerpc, ppc64, sparc], 0.9.1-1 [mips, mipsel, powerpcspe, sparc64])
parallel local alignment of biological sequences
zegrapher (2.0-4)
plotting mathematical functions and sequences on the plane
zimpl (3.3.1+dfsg-1)
mathematical modeling language for optimization problems
ztex-bmp (20120314-2)
universal macro processor