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[ Source: boxshade  ]

Package: boxshade (3.3.1-8)

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Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tags: Biology: Clustal/ALN, Nucleic Acids, biology::peptidic, field::biology, Field: Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, use::typesetting, Supports Format: works-with-format::html, works-with-format::plaintext, works-with-format::postscript, works-with-format::tex, Works with: Need an extra tag

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Download boxshade

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 54.7 kB207.0 kB [list of files]
amd64 51.2 kB182.0 kB [list of files]
arm64 (unofficial port) 48.0 kB174.0 kB [list of files]
armel 48.5 kB177.0 kB [list of files]
armhf 47.2 kB161.0 kB [list of files]
hppa (unofficial port) 51.2 kB186.0 kB [list of files]
hurd-i386 54.1 kB177.0 kB [list of files]
i386 47.8 kB177.0 kB [list of files]
kfreebsd-amd64 51.2 kB130.0 kB [list of files]
kfreebsd-i386 47.7 kB124.0 kB [list of files]
m68k (unofficial port) 41.8 kB172.0 kB [list of files]
mips 48.7 kB194.0 kB [list of files]
mipsel 49.1 kB194.0 kB [list of files]
powerpc 49.2 kB181.0 kB [list of files]
powerpcspe (unofficial port) 49.8 kB181.0 kB [list of files]
ppc64 (unofficial port) 49.5 kB194.0 kB [list of files]
s390x 51.7 kB190.0 kB [list of files]
sh4 (unofficial port) 57.8 kB176.0 kB [list of files]
sparc 46.6 kB181.0 kB [list of files]
sparc64 (unofficial port) 57.4 kB184.0 kB [list of files]
x32 (unofficial port) 51.9 kB177.0 kB [list of files]