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[ Source: boxshade  ]

Package: boxshade (3.3.1-13 and others)

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Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, use::typesetting, Supports Format: works-with-format::html, works-with-format::plaintext, works-with-format::postscript, works-with-format::tex, Works with: Need an extra tag, Text

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Download boxshade

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 3.3.1-13 56.4 kB185.0 kB [list of files]
amd64 3.3.1-13 54.0 kB161.0 kB [list of files]
arm64 3.3.1-13 53.3 kB164.0 kB [list of files]
armel 3.3.1-13 53.1 kB159.0 kB [list of files]
armhf 3.3.1-13 51.7 kB135.0 kB [list of files]
hppa (unofficial port) 3.3.1-13 51.0 kB157.0 kB [list of files]
i386 3.3.1-13 55.9 kB168.0 kB [list of files]
m68k (unofficial port) 3.3.1-13 52.5 kB167.0 kB [list of files]
mips64el 3.3.1-13 52.4 kB183.0 kB [list of files]
mipsel 3.3.1-13 52.2 kB169.0 kB [list of files]
powerpcspe (unofficial port) 3.3.1-12 51.3 kB192.0 kB [list of files]
ppc64 (unofficial port) 3.3.1-13 55.3 kB193.0 kB [list of files]
ppc64el 3.3.1-13 55.6 kB193.0 kB [list of files]
riscv64 (unofficial port) 3.3.1-13 53.3 kB150.0 kB [list of files]
s390x 3.3.1-13 52.9 kB172.0 kB [list of files]
sh4 (unofficial port) 3.3.1-13 60.2 kB156.0 kB [list of files]
sparc64 (unofficial port) 3.3.1-13 49.5 kB170.0 kB [list of files]
x32 (unofficial port) 3.3.1-13 53.8 kB156.0 kB [list of files]