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[ Source: boxshade  ]

Package: boxshade (3.3.1-9 and others)

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Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, use::typesetting, Supports Format: works-with-format::html, works-with-format::plaintext, works-with-format::postscript, works-with-format::tex, Works with: Need an extra tag

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Download boxshade

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 3.3.1-9 55.5 kB177.0 kB [list of files]
amd64 3.3.1-9 51.2 kB153.0 kB [list of files]
arm64 3.3.1-9 48.6 kB149.0 kB [list of files]
armel 3.3.1-9 48.3 kB148.0 kB [list of files]
armhf 3.3.1-9 47.1 kB132.0 kB [list of files]
hppa (unofficial port) 3.3.1-9 50.6 kB157.0 kB [list of files]
hurd-i386 3.3.1-9 50.7 kB156.0 kB [list of files]
i386 3.3.1-9 50.6 kB156.0 kB [list of files]
kfreebsd-amd64 3.3.1-9 51.2 kB153.0 kB [list of files]
kfreebsd-i386 3.3.1-9 50.6 kB156.0 kB [list of files]
m68k (unofficial port) 3.3.1-9 41.7 kB143.0 kB [list of files]
mips 3.3.1-9 50.1 kB165.0 kB [list of files]
mipsel 3.3.1-9 50.6 kB165.0 kB [list of files]
powerpc 3.3.1-9 49.6 kB192.0 kB [list of files]
powerpcspe (unofficial port) 3.3.1-8 49.8 kB181.0 kB [list of files]
ppc64 (unofficial port) 3.3.1-9 50.3 kB194.0 kB [list of files]
ppc64el 3.3.1-9 49.9 kB193.0 kB [list of files]
s390x 3.3.1-9 51.2 kB165.0 kB [list of files]
sh4 (unofficial port) 3.3.1-9 52.3 kB140.0 kB [list of files]
sparc64 (unofficial port) 3.3.1-9 47.5 kB155.0 kB [list of files]
x32 (unofficial port) 3.3.1-9 51.7 kB148.0 kB [list of files]