Package: tabix (1.19+ds-1.1 and others)

[ Source: htslib  ]

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Science: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

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• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

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  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

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  dep: libc6.1 (>= 2.37) [ia64]

• dep: libdeflate0 (>= 1.0)

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• dep: libhtscodecs2 (>= 1.3.0)

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• dep: liblzma5 (>= 5.1.1alpha+20120614)

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• dep: zlib1g (>= 1:1.1.4)

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Download tabix

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.19+ds-1.1+b1	471.2 kB	2,636.0 kB	[list of files]
amd64	1.19+ds-1.1+b1	464.6 kB	2,233.0 kB	[list of files]
arm64	1.19+ds-1.1+b1	434.3 kB	2,249.0 kB	[list of files]
armel	1.19+ds-1.1+b1	395.1 kB	2,046.0 kB	[list of files]
armhf	1.19+ds-1.1+b1	400.0 kB	1,474.0 kB	[list of files]
hppa (unofficial port)	1.19+ds-1.1+b1	456.9 kB	2,258.0 kB	[list of files]
i386	1.19+ds-1.1+b1	511.2 kB	2,542.0 kB	[list of files]
ia64 (unofficial port)	1.19+ds-1.1+b1	558.6 kB	4,599.0 kB	[list of files]
m68k (unofficial port)	1.19+ds-1.1+b1	427.9 kB	2,062.0 kB	[list of files]
mips64el	1.19+ds-1.1+b1	425.7 kB	2,617.0 kB	[list of files]
ppc64 (unofficial port)	1.19+ds-1.1+b1	486.9 kB	3,145.0 kB	[list of files]
ppc64el	1.19+ds-1.1+b1	502.7 kB	2,953.0 kB	[list of files]
riscv64	1.19+ds-1.1+b1	484.6 kB	1,881.0 kB	[list of files]
s390x	1.19+ds-1.1+b1	457.6 kB	2,449.0 kB	[list of files]
sh4 (unofficial port)	1.19+ds-1.1+b1	486.7 kB	1,993.0 kB	[list of files]
sparc64 (unofficial port)	1.19+ds-1.1+b1	397.6 kB	3,160.0 kB	[list of files]
x32 (unofficial port)	1.19+ds-1.1+b1	465.8 kB	2,182.0 kB	[list of files]