Package: ssw-align (1.1-14 and others)

[ Source: libssw  ]

Smith-Waterman aligner based on libssw

This package provides a command-line aligner based on the libssw library, a fast SIMD accelerated implementation of the Smith-Waterman algorithm. The input files can be in FASTA or FASTQ format. Both target and query files can contain multiple sequences. Each sequence in the query file will be aligned with all sequences in the target file. Output is provided in SAM or BLAST-like text format.

Other Packages Related to ssw-align

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libssw0 (= 1.1-14) [not riscv64]

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

  dep: libssw0 (= 1.1-14+b1) [riscv64]

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download ssw-align

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.1-14	26.1 kB	83.0 kB	[list of files]
amd64	1.1-14	23.3 kB	63.0 kB	[list of files]
arm64	1.1-14	20.2 kB	82.0 kB	[list of files]
armel	1.1-14	23.5 kB	62.0 kB	[list of files]
armhf	1.1-14	21.9 kB	50.0 kB	[list of files]
i386	1.1-14	26.6 kB	78.0 kB	[list of files]
ia64 (unofficial port)	1.1-14	31.2 kB	94.0 kB	[list of files]
m68k (unofficial port)	1.1-14	23.0 kB	66.0 kB	[list of files]
mips64el	1.1-14	25.8 kB	84.0 kB	[list of files]
ppc64 (unofficial port)	1.1-14	26.1 kB	83.0 kB	[list of files]
ppc64el	1.1-14	19.9 kB	83.0 kB	[list of files]
riscv64	1.1-14+b1	26.5 kB	60.0 kB	[list of files]
s390x	1.1-14	27.1 kB	71.0 kB	[list of files]
sh4 (unofficial port)	1.1-14	28.3 kB	82.0 kB	[list of files]
sparc64 (unofficial port)	1.1-14	25.0 kB	1,043.0 kB	[list of files]
x32 (unofficial port)	1.1-14	23.1 kB	58.0 kB	[list of files]