Package: sibsim4 (0.20-5 and others)

[ Source: sibsim4  ]

align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::TODO, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to sibsim4

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.3.4) [hppa]

  dep: libc6 (>= 2.30) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

  dep: libc6 (>= 2.4) [armel, armhf, i386, m68k, mips64el, mipsel, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.30) [ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

Download sibsim4

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.20-5	30.9 kB	85.0 kB	[list of files]
amd64	0.20-5	29.7 kB	73.0 kB	[list of files]
arm64	0.20-5	28.1 kB	73.0 kB	[list of files]
armel	0.20-5	27.5 kB	72.0 kB	[list of files]
armhf	0.20-5	26.2 kB	56.0 kB	[list of files]
hppa (unofficial port)	0.20-5	28.8 kB	69.0 kB	[list of files]
i386	0.20-5	30.8 kB	80.0 kB	[list of files]
ia64 (unofficial port)	0.20-5	36.3 kB	112.0 kB	[list of files]
m68k (unofficial port)	0.20-5	25.6 kB	60.0 kB	[list of files]
mips64el	0.20-5	29.3 kB	79.0 kB	[list of files]
mipsel	0.20-5	28.4 kB	78.0 kB	[list of files]
ppc64 (unofficial port)	0.20-5	31.9 kB	150.0 kB	[list of files]
ppc64el	0.20-5	31.9 kB	85.0 kB	[list of files]
riscv64 (unofficial port)	0.20-5+b1	28.9 kB	61.0 kB	[list of files]
s390x	0.20-5	30.5 kB	77.0 kB	[list of files]
sh4 (unofficial port)	0.20-5	29.5 kB	60.0 kB	[list of files]
sparc64 (unofficial port)	0.20-5	27.7 kB	78.0 kB	[list of files]
x32 (unofficial port)	0.20-5	28.5 kB	72.0 kB	[list of files]