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[ Source: sibsim4  ]

Package: sibsim4 (0.20-2 and others)

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align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::TODO, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

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Download sibsim4

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 0.20-2 29.7 kB109.0 kB [list of files]
amd64 0.20-2+b1 29.6 kB69.0 kB [list of files]
arm64 0.20-2+b1 26.4 kB69.0 kB [list of files]
armel 0.20-2+b1 28.2 kB72.0 kB [list of files]
armhf 0.20-2+b1 26.8 kB56.0 kB [list of files]
hppa (unofficial port) 0.20-2 28.7 kB92.0 kB [list of files]
hurd-i386 0.20-2 27.5 kB91.0 kB [list of files]
i386 0.20-2+b1 31.0 kB72.0 kB [list of files]
kfreebsd-amd64 0.20-2+b1 29.7 kB73.0 kB [list of files]
kfreebsd-i386 0.20-2+b1 30.9 kB72.0 kB [list of files]
m68k (unofficial port) 0.20-2 24.2 kB83.0 kB [list of files]
mips 0.20-2+b1 28.6 kB78.0 kB [list of files]
mips64el 0.20-2+b1 29.4 kB79.0 kB [list of files]
mipsel 0.20-2+b1 28.9 kB78.0 kB [list of files]
powerpc 0.20-2+b1 27.6 kB84.0 kB [list of files]
powerpcspe (unofficial port) 0.20-2 27.0 kB83.0 kB [list of files]
ppc64 (unofficial port) 0.20-2+b1 28.3 kB85.0 kB [list of files]
ppc64el 0.20-2+b1 29.2 kB85.0 kB [list of files]
s390x 0.20-2+b1 31.2 kB85.0 kB [list of files]
sh4 (unofficial port) 0.20-2 28.4 kB83.0 kB [list of files]
sparc64 (unofficial port) 0.20-2 26.8 kB93.0 kB [list of files]
x32 (unofficial port) 0.20-2 28.4 kB92.0 kB [list of files]