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[ Source: sibsim4  ]

Package: sibsim4 (0.20-3)

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align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::TODO, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

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Download sibsim4

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 30.8 kB84.0 kB [list of files]
amd64 29.6 kB68.0 kB [list of files]
arm64 26.4 kB68.0 kB [list of files]
armel 28.0 kB71.0 kB [list of files]
armhf 26.5 kB55.0 kB [list of files]
hppa (unofficial port) 29.2 kB68.0 kB [list of files]
hurd-i386 30.3 kB71.0 kB [list of files]
i386 30.9 kB71.0 kB [list of files]
kfreebsd-amd64 29.6 kB72.0 kB [list of files]
kfreebsd-i386 30.9 kB71.0 kB [list of files]
m68k (unofficial port) 25.2 kB59.0 kB [list of files]
mips 28.4 kB77.0 kB [list of files]
mips64el 29.3 kB78.0 kB [list of files]
mipsel 28.7 kB77.0 kB [list of files]
powerpc 28.2 kB83.0 kB [list of files]
powerpcspe (unofficial port) 27.2 kB83.0 kB [list of files]
ppc64 (unofficial port) 29.9 kB84.0 kB [list of files]
ppc64el 29.8 kB84.0 kB [list of files]
s390x 30.9 kB84.0 kB [list of files]
sh4 (unofficial port) 29.8 kB59.0 kB [list of files]
sparc64 (unofficial port) 27.4 kB77.0 kB [list of files]
x32 (unofficial port) 29.1 kB67.0 kB [list of files]