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[ Source: mummer  ]

Package: mummer (3.23+dfsg-2)

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Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::TODO, Supports Format: Plain Text, Works with: Need an extra tag

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Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 802.2 kB2,081.0 kB [list of files]
amd64 789.9 kB1,900.0 kB [list of files]
arm64 766.4 kB1,816.0 kB [list of files]
armel 762.4 kB1,755.0 kB [list of files]
armhf 762.2 kB1,519.0 kB [list of files]
hppa (unofficial port) 803.8 kB1,906.0 kB [list of files]
i386 795.6 kB1,899.0 kB [list of files]
kfreebsd-amd64 788.7 kB1,900.0 kB [list of files]
kfreebsd-i386 795.5 kB1,899.0 kB [list of files]
m68k (unofficial port) 770.9 kB1,827.0 kB [list of files]
mips 789.9 kB2,030.0 kB [list of files]
mips64el 800.2 kB2,152.0 kB [list of files]
mipsel 794.7 kB2,030.0 kB [list of files]
powerpc 776.6 kB2,619.0 kB [list of files]
powerpcspe (unofficial port) 779.5 kB2,491.0 kB [list of files]
ppc64 (unofficial port) 781.8 kB2,701.0 kB [list of files]
ppc64el 779.4 kB2,636.0 kB [list of files]
s390x 774.3 kB2,032.0 kB [list of files]
sh4 (unofficial port) 806.6 kB1,767.0 kB [list of files]
sparc64 (unofficial port) 766.5 kB1,943.0 kB [list of files]
x32 (unofficial port) 783.2 kB1,815.0 kB [list of files]