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[ Source: mummer  ]

Package: mummer (3.23+dfsg-1)

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Efficient sequence alignment of full genomes

MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::TODO, Supports Format: Plain Text, Works with: Need an extra tag

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Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 814.9 kB2,177.0 kB [list of files]
amd64 805.3 kB1,988.0 kB [list of files]
arm64 781.0 kB1,892.0 kB [list of files]
armel 773.8 kB1,811.0 kB [list of files]
armhf 775.7 kB1,571.0 kB [list of files]
hppa (unofficial port) 818.8 kB1,992.0 kB [list of files]
i386 810.1 kB1,971.0 kB [list of files]
kfreebsd-amd64 803.8 kB1,988.0 kB [list of files]
kfreebsd-i386 809.5 kB1,967.0 kB [list of files]
m68k (unofficial port) 790.0 kB1,907.0 kB [list of files]
mips 804.4 kB2,139.0 kB [list of files]
mips64el 812.7 kB2,249.0 kB [list of files]
mipsel 810.0 kB2,147.0 kB [list of files]
powerpc 789.7 kB2,619.0 kB [list of files]
powerpcspe (unofficial port) 793.5 kB2,619.0 kB [list of files]
ppc64 (unofficial port) 800.8 kB2,829.0 kB [list of files]
ppc64el 799.7 kB2,700.0 kB [list of files]
s390x 792.0 kB2,140.0 kB [list of files]
sh4 (unofficial port) 827.0 kB1,859.0 kB [list of files]
sparc64 (unofficial port) 778.5 kB2,023.0 kB [list of files]
x32 (unofficial port) 797.6 kB1,895.0 kB [list of files]