Package: covtobed (1.3.5+dfsg-2 and others)

[ Source: covtobed  ]

convert the coverage track from a BAM file into a BED file

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

Other Packages Related to covtobed

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: libbamtools2.5.2 (>= 2.5.2+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g

  compression library - runtime

Download covtobed

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.3.5+dfsg-2	45.8 kB	211.0 kB	[list of files]
amd64	1.3.5+dfsg-2	49.8 kB	146.0 kB	[list of files]
arm64	1.3.5+dfsg-2	44.6 kB	146.0 kB	[list of files]
armel	1.3.5+dfsg-2	42.8 kB	125.0 kB	[list of files]
armhf	1.3.5+dfsg-2	44.6 kB	97.0 kB	[list of files]
hppa (unofficial port)	1.3.5+dfsg-2	45.5 kB	123.0 kB	[list of files]
i386	1.3.5+dfsg-2	53.4 kB	149.0 kB	[list of files]
ia64 (unofficial port)	1.3.5+dfsg-2	57.1 kB	240.0 kB	[list of files]
m68k (unofficial port)	1.3.5+dfsg-2	47.0 kB	137.0 kB	[list of files]
mips64el	1.3.5+dfsg-2	46.4 kB	215.0 kB	[list of files]
ppc64 (unofficial port)	1.3.5+dfsg-2	49.7 kB	210.0 kB	[list of files]
ppc64el	1.3.5+dfsg-2	49.7 kB	210.0 kB	[list of files]
riscv64	1.3.5+dfsg-2+b1	48.2 kB	111.0 kB	[list of files]
s390x	1.3.5+dfsg-2	46.3 kB	138.0 kB	[list of files]
sh4 (unofficial port)	1.3.5+dfsg-2	54.0 kB	145.0 kB	[list of files]
sparc64 (unofficial port)	1.3.5+dfsg-2	39.5 kB	1,045.0 kB	[list of files]
x32 (unofficial port)	1.3.5+dfsg-2	50.4 kB	133.0 kB	[list of files]