Package: tree-ppuzzle (5.3~rc16+dfsg-9 and others)

[ Source: tree-puzzle  ]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Other Packages Related to tree-ppuzzle

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libopenmpi3t64 (>= 4.1.6)

  high performance message passing library -- shared library

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• dep: openmpi-bin

  high performance message passing library -- binaries

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

  package of programs for inferring phylogenies

• sug: treetool

  Package not available

Download tree-ppuzzle

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	5.3~rc16+dfsg-9+b1	181.6 kB	557.0 kB	[list of files]
amd64	5.3~rc16+dfsg-9+b1	181.5 kB	433.0 kB	[list of files]
arm64	5.3~rc16+dfsg-9+b1	164.6 kB	428.0 kB	[list of files]
armel	5.3~rc16+dfsg-9+b1	174.2 kB	448.0 kB	[list of files]
armhf	5.3~rc16+dfsg-9+b1	165.2 kB	332.0 kB	[list of files]
hppa (unofficial port)	5.3~rc16+dfsg-9+b1	172.1 kB	437.0 kB	[list of files]
i386	5.3~rc16+dfsg-9+b1	193.8 kB	532.0 kB	[list of files]
ia64 (unofficial port)	5.3~rc16+dfsg-9+b1	233.7 kB	860.0 kB	[list of files]
m68k (unofficial port)	5.3~rc16+dfsg-9+b1	165.7 kB	452.0 kB	[list of files]
mips64el	5.3~rc16+dfsg-9+b1	180.0 kB	511.0 kB	[list of files]
ppc64 (unofficial port)	5.3~rc16+dfsg-9+b1	193.5 kB	557.0 kB	[list of files]
ppc64el	5.3~rc16+dfsg-9+b1	191.6 kB	557.0 kB	[list of files]
riscv64	5.3~rc16+dfsg-9+b2	182.2 kB	377.0 kB	[list of files]
s390x	5.3~rc16+dfsg-9+b1	193.7 kB	484.0 kB	[list of files]
sh4 (unofficial port)	5.3~rc16+dfsg-9+b1	196.8 kB	429.0 kB	[list of files]
sparc64 (unofficial port)	5.3~rc16+dfsg-9+b1	166.6 kB	1,071.0 kB	[list of files]
x32 (unofficial port)	5.3~rc16+dfsg-9+b1	177.3 kB	416.0 kB	[list of files]