Package: tree-ppuzzle (5.3~rc16+dfsg-9 and others)

[ Source: tree-puzzle  ]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Other Packages Related to tree-ppuzzle

• dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.33) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.33) [ia64]

• dep: libopenmpi3 (>= 4.1.2) [not riscv64]

  high performance message passing library -- shared library

  dep: libopenmpi3 (>= 4.1.4) [riscv64]

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• dep: openmpi-bin

  high performance message passing library -- binaries

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

  package of programs for inferring phylogenies

• sug: treetool

  Package not available

Download tree-ppuzzle

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	5.3~rc16+dfsg-9	188.1 kB	509.0 kB	[list of files]
amd64	5.3~rc16+dfsg-9	183.0 kB	437.0 kB	[list of files]
arm64	5.3~rc16+dfsg-9	170.2 kB	416.0 kB	[list of files]
armel	5.3~rc16+dfsg-9	173.9 kB	444.0 kB	[list of files]
armhf	5.3~rc16+dfsg-9	165.2 kB	324.0 kB	[list of files]
hppa (unofficial port)	5.3~rc16+dfsg-9	173.9 kB	437.0 kB	[list of files]
i386	5.3~rc16+dfsg-9	194.1 kB	532.0 kB	[list of files]
ia64 (unofficial port)	5.3~rc16+dfsg-9	236.9 kB	861.0 kB	[list of files]
m68k (unofficial port)	5.3~rc16+dfsg-9	167.2 kB	452.0 kB	[list of files]
mips64el	5.3~rc16+dfsg-9	182.0 kB	515.0 kB	[list of files]
mipsel	5.3~rc16+dfsg-9	181.9 kB	491.0 kB	[list of files]
ppc64 (unofficial port)	5.3~rc16+dfsg-9	194.6 kB	557.0 kB	[list of files]
ppc64el	5.3~rc16+dfsg-9	192.5 kB	557.0 kB	[list of files]
riscv64 (unofficial port)	5.3~rc16+dfsg-9+b1	169.5 kB	343.0 kB	[list of files]
s390x	5.3~rc16+dfsg-9	169.1 kB	452.0 kB	[list of files]
sh4 (unofficial port)	5.3~rc16+dfsg-9	199.7 kB	401.0 kB	[list of files]
sparc64 (unofficial port)	5.3~rc16+dfsg-9	167.2 kB	479.0 kB	[list of files]
x32 (unofficial port)	5.3~rc16+dfsg-9	178.8 kB	416.0 kB	[list of files]