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[ Source: tree-puzzle  ]

Package: tree-ppuzzle (5.2-7 and others)

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Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

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Download tree-ppuzzle

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 5.2-7+b1 144.6 kB375.0 kB [list of files]
amd64 5.2-7+b1 163.1 kB360.0 kB [list of files]
armel 5.2-7+b1 169.7 kB368.0 kB [list of files]
armhf 5.2-7+b1 127.3 kB283.0 kB [list of files]
hppa (unofficial port) 5.2-7 139.8 kB371.0 kB [list of files]
hurd-i386 5.2-7+b2 127.3 kB344.0 kB [list of files]
i386 5.2-7+b1 127.4 kB301.0 kB [list of files]
kfreebsd-amd64 5.2-7+b1 142.1 kB322.0 kB [list of files]
kfreebsd-i386 5.2-7+b1 127.5 kB305.0 kB [list of files]
m68k (unofficial port) 5.2-5 126.9 kB352.0 kB [list of files]
mips 5.2-7 136.5 kB405.0 kB [list of files]
mipsel 5.2-7 138.3 kB405.0 kB [list of files]
powerpc 5.2-7+b1 160.6 kB343.0 kB [list of files]
powerpcspe (unofficial port) 5.2-7 184.6 kB391.0 kB [list of files]
ppc64 (unofficial port) 5.2-7+b1 138.0 kB394.0 kB [list of files]
ppc64el 5.2-7 139.3 kB346.0 kB [list of files]
sh4 (unofficial port) 5.2-5 172.7 kB380.0 kB [list of files]
sparc 5.2-7+b1 155.3 kB335.0 kB [list of files]
sparc64 (unofficial port) 5.2-7 181.7 kB373.0 kB [list of files]