Package: edlib-aligner (1.2.7-5)

[ Source: libedlib  ]

edlib sequence alignment tool using edit distance

Edlib is a lightweight and super fast C/C++ library for sequence alignment using edit distance. This package provides an aligner using this library.

Features of libedlib

 * Calculates edit distance (Levehnstein distance).
 * It can find optimal alignment path (instructions how to transform
   first sequence into the second sequence).
 * It can find just the start and/or end locations of alignment path -
   can be useful when speed is more important than having exact
   alignment path.
 * Supports multiple alignment methods: global(NW), prefix(SHW) and
   infix(HW), each of them useful for different scenarios.
 * You can extend character equality definition, enabling you to e.g.
   have wildcard characters, to have case insensitive alignment or to
   work with degenerate nucleotides.
 * It can easily handle small or very large sequences, even when finding
   alignment path, while consuming very little memory.
 * Super fast thanks to Myers's bit-vector algorithm.

Other Packages Related to edlib-aligner

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libedlib1 (= 1.2.7-5)

  library for sequence alignment using edit distance

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

Download edlib-aligner

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	22.1 kB	86.0 kB	[list of files]
amd64	24.1 kB	66.0 kB	[list of files]
arm64	22.4 kB	86.0 kB	[list of files]
armel	19.8 kB	53.0 kB	[list of files]
armhf	19.9 kB	49.0 kB	[list of files]
hppa (unofficial port)	22.6 kB	58.0 kB	[list of files]
i386	23.1 kB	65.0 kB	[list of files]
ia64 (unofficial port)	27.5 kB	86.0 kB	[list of files]
m68k (unofficial port)	22.7 kB	61.0 kB	[list of files]
mips64el	22.9 kB	87.0 kB	[list of files]
ppc64 (unofficial port)	24.9 kB	86.0 kB	[list of files]
ppc64el	27.5 kB	86.0 kB	[list of files]
riscv64	22.4 kB	54.0 kB	[list of files]
s390x	26.5 kB	74.0 kB	[list of files]
sh4 (unofficial port)	24.5 kB	85.0 kB	[list of files]
sparc64 (unofficial port)	20.5 kB	1,047.0 kB	[list of files]
x32 (unofficial port)	24.1 kB	65.0 kB	[list of files]