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Package: poa (2.0+20060928-4 and others)

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Partial Order Alignment for multiple sequence alignment

POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, works-with-format::plaintext, Works with: Need an extra tag

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Download poa

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 2.0+20060928-4 41.4 kB168.0 kB [list of files]
amd64 2.0+20060928-4 42.7 kB136.0 kB [list of files]
arm64 2.0+20060928-4 39.2 kB152.0 kB [list of files]
armel 2.0+20060928-4 40.7 kB143.0 kB [list of files]
armhf 2.0+20060928-4 38.9 kB115.0 kB [list of files]
hppa (unofficial port) 2.0+20060928-4 40.3 kB192.0 kB [list of files]
hurd-i386 2.0+20060928-4 39.5 kB119.0 kB [list of files]
i386 2.0+20060928-4 39.3 kB119.0 kB [list of files]
kfreebsd-amd64 2.0+20060928-4 42.7 kB136.0 kB [list of files]
kfreebsd-i386 2.0+20060928-4 39.4 kB119.0 kB [list of files]
m68k (unofficial port) 2.0+20060928-4 34.4 kB119.0 kB [list of files]
mips 2.0+20060928-4 36.5 kB167.0 kB [list of files]
mips64el 2.0+20060928-4 38.6 kB172.0 kB [list of files]
mipsel 2.0+20060928-4 37.1 kB167.0 kB [list of files]
powerpc 2.0+20060928-4 36.2 kB167.0 kB [list of files]
powerpcspe (unofficial port) 2.0+20060928-4 36.7 kB167.0 kB [list of files]
ppc64 (unofficial port) 2.0+20060928-4+b1 38.8 kB170.0 kB [list of files]
ppc64el 2.0+20060928-4 38.8 kB168.0 kB [list of files]
s390x 2.0+20060928-4 43.7 kB168.0 kB [list of files]
sh4 (unofficial port) 2.0+20060928-4 45.8 kB139.0 kB [list of files]
sparc64 (unofficial port) 2.0+20060928-4 37.0 kB161.0 kB [list of files]
x32 (unofficial port) 2.0+20060928-4 42.6 kB135.0 kB [list of files]