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Package: poa (2.0+20060928-3 and others)

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Partial Order Alignment for multiple sequence alignment

POA is Partial Order Alignment, a fast program for multiple sequence alignment (MSA) in bioinformatics. Its advantages are speed, scalability, sensitivity, and the superior ability to handle branching / indels in the alignment. Partial order alignment is an approach to MSA, which can be combined with existing methods such as progressive alignment. POA optimally aligns a pair of MSAs and which therefore can be applied directly to progressive alignment methods such as CLUSTAL. For large alignments, Progressive POA is 10-30 times faster than CLUSTALW.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, works-with-format::plaintext, Works with: Need an extra tag

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Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 2.0+20060928-3 52.1 kB193.0 kB [list of files]
amd64 2.0+20060928-3 49.7 kB164.0 kB [list of files]
arm64 (unofficial port) 2.0+20060928-3 39.7 kB172.0 kB [list of files]
armel 2.0+20060928-3 52.6 kB176.0 kB [list of files]
armhf 2.0+20060928-3 47.8 kB155.0 kB [list of files]
hppa (unofficial port) 2.0+20060928-3 42.6 kB199.0 kB [list of files]
hurd-i386 2.0+20060928-3+b1 46.5 kB155.0 kB [list of files]
i386 2.0+20060928-3 46.5 kB155.0 kB [list of files]
kfreebsd-amd64 2.0+20060928-3 49.7 kB125.0 kB [list of files]
kfreebsd-i386 2.0+20060928-3 46.5 kB116.0 kB [list of files]
m68k (unofficial port) 2.0+20060928-3 41.6 kB149.0 kB [list of files]
mips 2.0+20060928-3 44.9 kB186.0 kB [list of files]
mipsel 2.0+20060928-3 45.2 kB186.0 kB [list of files]
powerpc 2.0+20060928-3 47.6 kB180.0 kB [list of files]
powerpcspe (unofficial port) 2.0+20060928-3 47.6 kB135.0 kB [list of files]
ppc64 (unofficial port) 2.0+20060928-3 52.3 kB208.0 kB [list of files]
s390x 2.0+20060928-3 57.3 kB196.0 kB [list of files]
sh4 (unofficial port) 2.0+20060928-3 58.6 kB171.0 kB [list of files]
sparc 2.0+20060928-3 45.3 kB179.0 kB [list of files]
sparc64 (unofficial port) 2.0+20060928-3 47.1 kB189.0 kB [list of files]
x32 (unofficial port) 2.0+20060928-3 50.2 kB163.0 kB [list of files]