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[ Source: kalign  ]

Package: kalign (1:2.03+20110620-2 and others)

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Global and progressive multiple sequence alignment

Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Need an extra tag

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Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1:2.03+20110620-2 106.6 kB285.0 kB [list of files]
amd64 1:2.03+20110620-2 92.6 kB244.0 kB [list of files]
arm64 1:2.03+20110620-2 78.3 kB248.0 kB [list of files]
armel 1:2.03+20110620-2 87.4 kB227.0 kB [list of files]
armhf 1:2.03+20110620-2+b1 67.7 kB155.0 kB [list of files]
hppa (unofficial port) 1:2.03+20110620-2 69.5 kB231.0 kB [list of files]
hurd-i386 1:2.03+20110620-2+b1 81.1 kB225.0 kB [list of files]
i386 1:2.03+20110620-2 76.6 kB217.0 kB [list of files]
kfreebsd-amd64 1:2.03+20110620-2 92.6 kB206.0 kB [list of files]
kfreebsd-i386 1:2.03+20110620-2 76.5 kB178.0 kB [list of files]
m68k (unofficial port) 1:2.03+20110620-2 65.4 kB151.0 kB [list of files]
mips 1:2.03+20110620-2 81.8 kB228.0 kB [list of files]
mips64el 1:2.03+20110620-2 81.2 kB262.0 kB [list of files]
mipsel 1:2.03+20110620-2 82.2 kB228.0 kB [list of files]
powerpc 1:2.03+20110620-2 83.7 kB219.0 kB [list of files]
powerpcspe (unofficial port) 1:2.03+20110620-2 82.3 kB230.0 kB [list of files]
ppc64 (unofficial port) 1:2.03+20110620-2+b1 80.3 kB263.0 kB [list of files]
ppc64el 1:2.03+20110620-2 84.6 kB241.0 kB [list of files]
s390x 1:2.03+20110620-2 98.8 kB260.0 kB [list of files]
sh4 (unofficial port) 1:2.03+20110620-2 84.1 kB195.0 kB [list of files]
sparc64 (unofficial port) 1:2.03+20110620-2 86.9 kB229.0 kB [list of files]
x32 (unofficial port) 1:2.03+20110620-2 92.3 kB243.0 kB [list of files]