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[ Source: kalign  ]

Package: kalign (1:3.2.3-4 and others)

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Global and progressive multiple sequence alignment

Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Need an extra tag

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Download kalign

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1:3.2.3-4+b1 68.5 kB244.0 kB [list of files]
amd64 1:3.2.3-4+b1 113.9 kB990.0 kB [list of files]
arm64 1:3.2.3-4+b1 66.1 kB223.0 kB [list of files]
armel 1:3.2.3-4+b1 63.1 kB213.0 kB [list of files]
armhf 1:3.2.3-4+b1 61.1 kB173.0 kB [list of files]
hppa (unofficial port) 1:3.2.3-4+b1 64.3 kB207.0 kB [list of files]
i386 1:3.2.3-4+b1 101.1 kB1,050.0 kB [list of files]
m68k (unofficial port) 1:3.2.3-4+b1 61.2 kB209.0 kB [list of files]
mips64el 1:3.2.3-4+b1 65.2 kB230.0 kB [list of files]
mipsel 1:3.2.3-4+b1 63.9 kB219.0 kB [list of files]
ppc64 (unofficial port) 1:3.2.3-4+b1 72.1 kB275.0 kB [list of files]
ppc64el 1:3.2.3-4+b1 75.6 kB275.0 kB [list of files]
riscv64 (unofficial port) 1:3.2.3-4+b1 63.1 kB183.0 kB [list of files]
s390x 1:3.2.3-4+b1 66.1 kB235.0 kB [list of files]
sh4 (unofficial port) 1:3.2.3-4+b1 69.4 kB193.0 kB [list of files]
sparc64 (unofficial port) 1:3.2.3-4+b1 59.6 kB214.0 kB [list of files]
x32 (unofficial port) 1:3.2.3-4+b1 68.3 kB217.0 kB [list of files]