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[ Source: kalign  ]

Package: kalign (1:2.03+20110620-4 and others)

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Global and progressive multiple sequence alignment

Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Need an extra tag

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Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1:2.03+20110620-4 91.6 kB274.0 kB [list of files]
amd64 1:2.03+20110620-4 99.9 kB265.0 kB [list of files]
arm64 1:2.03+20110620-4 83.5 kB233.0 kB [list of files]
armel 1:2.03+20110620-4 76.1 kB220.0 kB [list of files]
armhf 1:2.03+20110620-4 71.3 kB156.0 kB [list of files]
hppa (unofficial port) 1:2.03+20110620-4 77.5 kB209.0 kB [list of files]
hurd-i386 1:2.03+20110620-4 86.2 kB240.0 kB [list of files]
i386 1:2.03+20110620-4 85.8 kB232.0 kB [list of files]
kfreebsd-amd64 1:2.03+20110620-3 98.7 kB273.0 kB [list of files]
kfreebsd-i386 1:2.03+20110620-3 84.6 kB244.0 kB [list of files]
m68k (unofficial port) 1:2.03+20110620-4 71.8 kB208.0 kB [list of files]
mips 1:2.03+20110620-4 78.6 kB243.0 kB [list of files]
mips64el 1:2.03+20110620-4 85.7 kB265.0 kB [list of files]
mipsel 1:2.03+20110620-4 79.7 kB243.0 kB [list of files]
powerpc 1:2.03+20110620-4 78.5 kB288.0 kB [list of files]
powerpcspe (unofficial port) 1:2.03+20110620-4 85.2 kB288.0 kB [list of files]
ppc64 (unofficial port) 1:2.03+20110620-4 87.4 kB289.0 kB [list of files]
ppc64el 1:2.03+20110620-4 99.4 kB353.0 kB [list of files]
s390x 1:2.03+20110620-4 86.4 kB265.0 kB [list of files]
sh4 (unofficial port) 1:2.03+20110620-4 90.2 kB180.0 kB [list of files]
sparc64 (unofficial port) 1:2.03+20110620-4 74.6 kB226.0 kB [list of files]
x32 (unofficial port) 1:2.03+20110620-4 98.2 kB264.0 kB [list of files]