Package: kalign (1:3.3.5-1)

[ Source: kalign  ]

Global and progressive multiple sequence alignment

Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to kalign

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• enh: bioperl-run

  BioPerl wrappers: scripts

• enh: t-coffee

  Multiple Sequence Alignment

Download kalign

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha (unofficial port)	88.4 kB	407.0 kB	[list of files]
amd64	128.4 kB	1,037.0 kB	[list of files]
arm64	81.0 kB	405.0 kB	[list of files]
armel	78.9 kB	303.0 kB	[list of files]
armhf	76.2 kB	247.0 kB	[list of files]
hppa (unofficial port)	82.6 kB	322.0 kB	[list of files]
i386	88.5 kB	339.0 kB	[list of files]
ia64 (unofficial port)	101.1 kB	522.0 kB	[list of files]
m68k (unofficial port)	82.2 kB	307.0 kB	[list of files]
mips64el	79.1 kB	418.0 kB	[list of files]
mipsel	78.5 kB	416.0 kB	[list of files]
ppc64 (unofficial port)	91.3 kB	469.0 kB	[list of files]
ppc64el	91.9 kB	405.0 kB	[list of files]
riscv64 (unofficial port)	80.3 kB	263.0 kB	[list of files]
s390x	82.6 kB	321.0 kB	[list of files]
sh4 (unofficial port)	88.1 kB	339.0 kB	[list of files]
sparc64 (unofficial port)	75.8 kB	2,136.0 kB	[list of files]
x32 (unofficial port)	86.0 kB	311.0 kB	[list of files]