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[ Source: kalign  ]

Package: kalign (1:3.3.1-1 and others)

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Global and progressive multiple sequence alignment

Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth-Manber string-matching algorithm, to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global alignment.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::comparing, works-with-format::plaintext, Works with: Need an extra tag

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Download kalign

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 1:3.3.1-1 76.0 kB229.0 kB [list of files]
amd64 1:3.3.1-1 135.4 kB1,135.0 kB [list of files]
arm64 1:3.3.1-1 72.1 kB216.0 kB [list of files]
armel 1:3.3.1-1 70.4 kB210.0 kB [list of files]
armhf 1:3.3.1-1 67.7 kB170.0 kB [list of files]
hppa (unofficial port) 1:3.3.1-1 71.7 kB203.0 kB [list of files]
i386 1:3.3.1-1 174.2 kB1,567.0 kB [list of files]
ia64 (unofficial port) 1:2.03+20110620-5 130.5 kB561.0 kB [list of files]
m68k (unofficial port) 1:3.3.1-1 68.7 kB210.0 kB [list of files]
mips64el 1:3.3.1-1 71.0 kB222.0 kB [list of files]
mipsel 1:3.3.1-1 71.8 kB211.0 kB [list of files]
ppc64 (unofficial port) 1:3.3.1-1 79.4 kB340.0 kB [list of files]
ppc64el 1:3.3.1-1 85.0 kB340.0 kB [list of files]
riscv64 (unofficial port) 1:3.3.1-1 69.2 kB181.0 kB [list of files]
s390x 1:3.3.1-1 73.5 kB240.0 kB [list of files]
sh4 (unofficial port) 1:3.3.1-1 79.9 kB191.0 kB [list of files]
sparc64 (unofficial port) 1:3.3.1-1 66.0 kB214.0 kB [list of files]
x32 (unofficial port) 1:3.3.1-1 74.8 kB210.0 kB [list of files]