Package: vg (1.30.0+ds-1 and others)

[ Source: vg  ]

tools for working with genome variation graphs

variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods

Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of:

 - nodes, which are labeled by sequences and ids
 - edges, which connect two nodes via either of their respective ends
 - paths, describe genomes, sequence alignments, and annotations (such as gene
  models and transcripts) as walks through nodes connected by edges

This model is similar to a number of sequence graphs that have been used in assembly and multiple sequence alignment. Paths provide coordinate systems relative to genomes encoded in the graph, allowing stable mappings to be produced even if the structure of the graph is changed.

Other Packages Related to vg

• dep: libatomic1 (>= 4.8)

  support library providing __atomic built-in functions

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  program options library for C++

• dep: libc6 (>= 2.33)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libdivsufsort3 (>= 2.0.1)

  fast suffix array construction

• dep: libdw1 (>= 0.126) [amd64]

  library that provides access to the DWARF debug information

• dep: libfastahack0 (>= 0.0+git20160702.bbc645f)

  library for indexing and sequence extraction from FASTA files (lib)

• dep: libgcc-s1 (>= 3.4) [mips64el]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [amd64]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libjansson4 (>= 2.14)

  C library for encoding, decoding and manipulating JSON data

• dep: libjemalloc2 (>= 5.0.0)

  general-purpose scalable concurrent malloc(3) implementation

• dep: libraptor2-0 (>= 2.0.14)

  Raptor 2 RDF syntax library

• dep: libssw0 (>= 1.1)

  fast SIMD parallelized implementation of the Smith-Waterman algorithm

• dep: libstdc++6 (>= 12)

  GNU Standard C++ Library v3

• dep: libtabixpp0 (>= 1.0.0)

  C++ wrapper to tabix indexer

• dep: libvcflib1 (>= 1.0.3+dfsg)

  C++ library for parsing and manipulating VCF files

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download vg

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.30.0+ds-1+b2	48,532.8 kB	176,762.0 kB	[list of files]
mips64el	1.30.0+ds-1+b2	6,335.7 kB	33,273.0 kB	[list of files]