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Package: t-coffee (11.00.8cbe486-2 and others)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download t-coffee

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 11.00.8cbe486-2 945.3 kB3,136.0 kB [list of files]
amd64 11.00.8cbe486-2 904.2 kB2,512.0 kB [list of files]
arm64 11.00.8cbe486-2 817.4 kB2,420.0 kB [list of files]
armel 11.00.8cbe486-2 712.2 kB2,210.0 kB [list of files]
armhf 11.00.8cbe486-2 725.7 kB1,730.0 kB [list of files]
hppa (unofficial port) 11.00.8cbe486-2 846.7 kB2,535.0 kB [list of files]
hurd-i386 11.00.8cbe486-2 877.5 kB2,707.0 kB [list of files]
i386 11.00.8cbe486-2 878.4 kB2,707.0 kB [list of files]
kfreebsd-amd64 11.00.8cbe486-2 904.3 kB2,512.0 kB [list of files]
kfreebsd-i386 11.00.8cbe486-2 877.4 kB2,707.0 kB [list of files]
m68k (unofficial port) 11.00.8cbe486-2 646.1 kB2,206.0 kB [list of files]
mips 11.00.8cbe486-2 830.3 kB2,907.0 kB [list of files]
mipsel 11.00.8cbe486-2 842.9 kB2,931.0 kB [list of files]
powerpc 11.00.8cbe486-2 819.9 kB2,630.0 kB [list of files]
powerpcspe (unofficial port) 11.00.8cbe486-1 829.0 kB2,644.0 kB [list of files]
ppc64 (unofficial port) 11.00.8cbe486-2 865.5 kB2,953.0 kB [list of files]
ppc64el 11.00.8cbe486-2 901.5 kB3,016.0 kB [list of files]
s390x 11.00.8cbe486-2 826.4 kB2,684.0 kB [list of files]
sh4 (unofficial port) 11.00.8cbe486-2 884.3 kB2,202.0 kB [list of files]
sparc64 (unofficial port) 11.00.8cbe486-2 758.6 kB2,371.0 kB [list of files]
x32 (unofficial port) 11.00.8cbe486-2 915.0 kB2,547.0 kB [list of files]