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[ Source: t-coffee  ]

Package: t-coffee (11.00.8cbe486-1)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Architecture Package Size Installed Size Files
alpha (unofficial port) 943.0 kB3,165.0 kB [list of files]
amd64 899.7 kB2,511.0 kB [list of files]
arm64 816.6 kB2,467.0 kB [list of files]
armel 706.0 kB2,216.0 kB [list of files]
armhf 717.0 kB1,740.0 kB [list of files]
hppa (unofficial port) 844.2 kB2,582.0 kB [list of files]
hurd-i386 868.3 kB2,718.0 kB [list of files]
i386 868.7 kB2,682.0 kB [list of files]
kfreebsd-amd64 899.4 kB2,480.0 kB [list of files]
kfreebsd-i386 868.5 kB2,686.0 kB [list of files]
m68k (unofficial port) 641.6 kB2,189.0 kB [list of files]
mips 802.2 kB2,915.0 kB [list of files]
mipsel 814.1 kB2,915.0 kB [list of files]
powerpc 815.2 kB2,604.0 kB [list of files]
powerpcspe (unofficial port) 829.0 kB2,644.0 kB [list of files]
ppc64 (unofficial port) 865.4 kB2,986.0 kB [list of files]
ppc64el 897.8 kB2,954.0 kB [list of files]
s390x 822.3 kB2,677.0 kB [list of files]
sh4 (unofficial port) 800.4 kB2,093.0 kB [list of files]
sparc 730.2 kB2,353.0 kB [list of files]
sparc64 (unofficial port) 771.9 kB2,420.0 kB [list of files]
x32 (unofficial port) 914.5 kB2,568.0 kB [list of files]