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Package: t-coffee (11.00.8cbe486-1 and others)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Download t-coffee

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha (unofficial port) 11.00.8cbe486-1 943.0 kB3,165.0 kB [list of files]
amd64 11.00.8cbe486-1+b1 898.4 kB2,491.0 kB [list of files]
arm64 11.00.8cbe486-1+b1 807.3 kB2,397.0 kB [list of files]
armel 11.00.8cbe486-1+b1 703.3 kB2,190.0 kB [list of files]
armhf 11.00.8cbe486-1+b1 716.6 kB1,713.0 kB [list of files]
hppa (unofficial port) 11.00.8cbe486-1+b1 847.8 kB2,536.0 kB [list of files]
hurd-i386 11.00.8cbe486-1+b1 870.7 kB2,696.0 kB [list of files]
i386 11.00.8cbe486-1+b1 871.0 kB2,696.0 kB [list of files]
kfreebsd-amd64 11.00.8cbe486-1+b1 897.7 kB2,491.0 kB [list of files]
kfreebsd-i386 11.00.8cbe486-1+b1 870.5 kB2,696.0 kB [list of files]
m68k (unofficial port) 11.00.8cbe486-1+b1 641.2 kB2,194.0 kB [list of files]
mips 11.00.8cbe486-1+b1 803.3 kB2,908.0 kB [list of files]
mipsel 11.00.8cbe486-1+b1 814.6 kB2,908.0 kB [list of files]
powerpc 11.00.8cbe486-1+b1 817.4 kB2,632.0 kB [list of files]
powerpcspe (unofficial port) 11.00.8cbe486-1 829.0 kB2,644.0 kB [list of files]
ppc64 (unofficial port) 11.00.8cbe486-1+b1 859.8 kB2,950.0 kB [list of files]
ppc64el 11.00.8cbe486-1+b1 900.3 kB2,960.0 kB [list of files]
s390x 11.00.8cbe486-1+b1 820.7 kB2,661.0 kB [list of files]
sh4 (unofficial port) 11.00.8cbe486-1+b1 876.1 kB2,196.0 kB [list of files]
sparc64 (unofficial port) 11.00.8cbe486-1+b1 752.7 kB2,348.0 kB [list of files]
x32 (unofficial port) 11.00.8cbe486-1+b2 909.0 kB2,529.0 kB [list of files]