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[ Source: t-coffee  ]

Package: t-coffee (11.00.8cbe486-3)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Architecture Package Size Installed Size Files
alpha (unofficial port) 948.4 kB3,144.0 kB [list of files]
amd64 932.9 kB2,551.0 kB [list of files]
arm64 825.3 kB2,451.0 kB [list of files]
armel 774.0 kB2,374.0 kB [list of files]
armhf 799.3 kB1,786.0 kB [list of files]
hppa (unofficial port) 852.2 kB2,549.0 kB [list of files]
hurd-i386 943.6 kB2,866.0 kB [list of files]
i386 938.6 kB2,854.0 kB [list of files]
kfreebsd-amd64 908.5 kB2,523.0 kB [list of files]
kfreebsd-i386 877.3 kB2,706.0 kB [list of files]
m68k (unofficial port) 763.0 kB2,422.0 kB [list of files]
mips 866.5 kB3,026.0 kB [list of files]
mips64el 884.1 kB3,111.0 kB [list of files]
mipsel 879.0 kB3,050.0 kB [list of files]
powerpc 824.7 kB2,822.0 kB [list of files]
powerpcspe (unofficial port) 853.1 kB2,822.0 kB [list of files]
ppc64 (unofficial port) 878.5 kB3,143.0 kB [list of files]
ppc64el 912.3 kB3,015.0 kB [list of files]
s390x 841.1 kB2,763.0 kB [list of files]
sh4 (unofficial port) 1,009.2 kB2,390.0 kB [list of files]
sparc64 (unofficial port) 788.2 kB2,539.0 kB [list of files]
x32 (unofficial port) 935.4 kB2,574.0 kB [list of files]