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[ Source: t-coffee  ]

Package: t-coffee (11.00.8cbe486-4)

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Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

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Architecture Package Size Installed Size Files
alpha (unofficial port) 1,883.8 kB4,263.0 kB [list of files]
amd64 1,868.2 kB3,670.0 kB [list of files]
arm64 1,760.5 kB3,570.0 kB [list of files]
armel 1,711.1 kB3,493.0 kB [list of files]
armhf 1,734.4 kB2,905.0 kB [list of files]
hppa (unofficial port) 1,787.8 kB3,668.0 kB [list of files]
hurd-i386 1,879.0 kB3,985.0 kB [list of files]
i386 1,873.9 kB3,973.0 kB [list of files]
kfreebsd-amd64 1,843.8 kB3,642.0 kB [list of files]
kfreebsd-i386 1,812.7 kB3,825.0 kB [list of files]
m68k (unofficial port) 1,699.3 kB3,541.0 kB [list of files]
mips 1,801.9 kB4,145.0 kB [list of files]
mips64el 1,819.8 kB4,230.0 kB [list of files]
mipsel 1,814.5 kB4,169.0 kB [list of files]
powerpc 1,760.3 kB3,941.0 kB [list of files]
powerpcspe (unofficial port) 1,788.4 kB3,941.0 kB [list of files]
ppc64 (unofficial port) 1,814.3 kB4,262.0 kB [list of files]
ppc64el 1,847.5 kB4,134.0 kB [list of files]
s390x 1,776.6 kB3,882.0 kB [list of files]
sh4 (unofficial port) 1,944.7 kB3,510.0 kB [list of files]
sparc64 (unofficial port) 1,724.2 kB3,658.0 kB [list of files]
x32 (unofficial port) 1,870.7 kB3,693.0 kB [list of files]