all options
squeeze  ] [  wheezy  ] [  jessie  ] [  sid  ]
[ Source: t-coffee  ]

Package: t-coffee (10.00.r1613-1)

Links for t-coffee

Screenshot

Debian Resources:

Download Source Package t-coffee:

Maintainers:

External Resources:

Similar packages:

Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It can also estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information

T-Coffee has a special called M-Coffee that makes it possible to combine the output of many multiple sequence alignment packages. In its published version, it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and T-Coffee. A special version has been made for Debian, DM-Coffee, that uses only free software by replacing Clustal W by Kalign. Using the 8 Methods of M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite methods if you prefer.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Need an extra tag, works-with-format::plaintext, works-with::TODO

Other Packages Related to t-coffee

  • depends
  • recommends
  • suggests
  • enhances

Download t-coffee

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 847.9 kB2,830.0 kB [list of files]
amd64 846.7 kB2,388.0 kB [list of files]
arm64 (unofficial port) 773.9 kB2,360.0 kB [list of files]
armel 684.4 kB2,142.0 kB [list of files]
armhf 688.5 kB1,678.0 kB [list of files]
hppa (unofficial port) 782.3 kB2,440.0 kB [list of files]
hurd-i386 747.8 kB2,353.0 kB [list of files]
i386 747.7 kB2,317.0 kB [list of files]
kfreebsd-amd64 847.3 kB2,357.0 kB [list of files]
kfreebsd-i386 747.6 kB2,321.0 kB [list of files]
m68k (unofficial port) 610.3 kB2,134.0 kB [list of files]
mips 764.9 kB2,812.0 kB [list of files]
mipsel 776.3 kB2,812.0 kB [list of files]
powerpc 707.2 kB2,274.0 kB [list of files]
powerpcspe (unofficial port) 729.3 kB2,319.0 kB [list of files]
ppc64 (unofficial port) 749.9 kB2,570.0 kB [list of files]
s390x 768.5 kB2,435.0 kB [list of files]
sh4 (unofficial port) 766.4 kB2,018.0 kB [list of files]
sparc 650.6 kB2,100.0 kB [list of files]
sparc64 (unofficial port) 735.7 kB2,327.0 kB [list of files]
x32 (unofficial port) 867.0 kB2,456.0 kB [list of files]