Package: unifrac-tools (1.4-3 and others)

[ Source: unifrac-tools  ]

high-performance phylogenetic diversity calculations (binaries)

The de facto repository for high-performance phylogenetic diversity calculations. The methods in this repository are based on an implementation of the Strided State UniFrac algorithm which is faster, and uses less memory than Fast UniFrac. Strided State UniFrac supports Unweighted UniFrac, Weighted UniFrac, Generalized UniFrac, Variance Adjusted UniFrac and meta UniFrac. This repository also includes Stacked Faith (manuscript in preparation), a method for calculating Faith's PD that is faster and uses less memory than the Fast UniFrac-based reference implementation.

This package contains target binaries ssu and faithpd

Other Packages Related to unifrac-tools

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  or libblas.so.3

  virtual package provided by libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [alpha, amd64, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [arm64, ia64, mips64el, ppc64el, riscv64, sh4]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: liblapacke (>= 3.12.0)

  Library of linear algebra routines 3 - C lib shared version

• dep: liblz4-1 (>= 0.0~r130)

  Fast LZ compression algorithm library - runtime

• dep: libssu0

  high-performance phylogenetic diversity calculations (lib)

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libsz2 (>= 1.1.3)

  Adaptive Entropy Coding library - SZIP

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

Download unifrac-tools

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.4-3+b1	1,220.5 kB	8,839.0 kB	[list of files]
amd64	1.4-3+b2	1,630.4 kB	7,938.0 kB	[list of files]
arm64	1.4-3+b2	1,407.7 kB	8,574.0 kB	[list of files]
armel	1.4-3+b2	1,488.8 kB	9,361.0 kB	[list of files]
armhf	1.4-3+b2	1,433.5 kB	6,258.0 kB	[list of files]
i386	1.4-3+b2	1,488.4 kB	9,868.0 kB	[list of files]
ia64 (unofficial port)	1.4-3+b1	1,507.2 kB	15,977.0 kB	[list of files]
m68k (unofficial port)	1.4-3+b1	1,006.4 kB	7,382.0 kB	[list of files]
mips64el	1.4-3+b2	1,175.9 kB	8,790.0 kB	[list of files]
ppc64el	1.4-3+b2	1,398.9 kB	10,110.0 kB	[list of files]
riscv64	1.4-3+b2	1,743.7 kB	7,082.0 kB	[list of files]
sh4 (unofficial port)	1.4-3+b1	1,263.2 kB	6,516.0 kB	[list of files]
x32 (unofficial port)	1.4-3+b1	1,538.9 kB	7,514.0 kB	[list of files]