all options
buster  ] [  bullseye  ] [  bookworm  ] [  trixie  ] [  sid  ]
[ Source: lagan  ]

Package: lagan (2.0-10)

Links for lagan

Screenshot

Debian Resources:

Download Source Package lagan:

Maintainers:

External Resources:

Similar packages:

highly parametrizable pairwise global genome sequence aligner

Lagan takes local alignments generated by CHAOS as anchors, and limits the search area of the Needleman-Wunsch algorithm around these anchors.

Multi-LAGAN is a generalization of the pairwise algorithm to multiple sequence alignment. M-LAGAN performs progressive pairwise alignments, guided by a user-specified phylogenetic tree. Alignments are aligned to other alignments using the sum-of-pairs metric.

Other Packages Related to lagan

  • depends
  • recommends
  • suggests
  • enhances

Download lagan

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 178.8 kB1,898.0 kB [list of files]
amd64 179.9 kB834.0 kB [list of files]
arm64 170.4 kB1,770.0 kB [list of files]
armel 163.2 kB691.0 kB [list of files]
armhf 162.4 kB583.0 kB [list of files]
hppa (unofficial port) 174.6 kB716.0 kB [list of files]
i386 186.7 kB831.0 kB [list of files]
ia64 (unofficial port) 213.5 kB1,035.0 kB [list of files]
m68k (unofficial port) 155.6 kB683.0 kB [list of files]
mips64el 182.3 kB1,924.0 kB [list of files]
ppc64 (unofficial port) 190.5 kB2,034.0 kB [list of files]
ppc64el 199.0 kB1,898.0 kB [list of files]
riscv64 180.8 kB682.0 kB [list of files]
s390x 186.6 kB802.0 kB [list of files]
sh4 (unofficial port) 179.3 kB1,747.0 kB [list of files]
sparc64 (unofficial port) 166.3 kB23,868.0 kB [list of files]
x32 (unofficial port) 174.9 kB796.0 kB [list of files]