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[ 源代码: idba  ]

软件包:idba(1.1.3-3)

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iterative De Bruijn Graph short read assemblers

IDBA stands for iterative de Bruijn graph assembler. In computational sequence biology, an assembler solves the puzzle coming from large sequencing machines that feature many gigabytes of short reads from a large genome.

This package provides several flavours of the IDBA assembler, as they all share the same source tree but serve different purposes and evolved over time.

IDBA is the basic iterative de Bruijn graph assembler for second-generation sequencing reads. IDBA-UD, an extension of IDBA, is designed to utilize paired-end reads to assemble low-depth regions and use progressive depth on contigs to reduce errors in high-depth regions. It is a generic purpose assembler and especially good for single-cell and metagenomic sequencing data. IDBA-Hybrid is another update version of IDBA-UD, which can make use of a similar reference genome to improve assembly result. IDBA-Tran is an iterative de Bruijn graph assembler for RNA-Seq data.

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硬件架构 软件包大小 安装后大小 文件
alpha (非官方移植版) 385.1 kB2,951.0 kB [文件列表]
amd64 371.8 kB2,571.0 kB [文件列表]
arm64 333.1 kB2,191.0 kB [文件列表]
armel 319.3 kB2,199.0 kB [文件列表]
armhf 329.5 kB1,575.0 kB [文件列表]
hppa (非官方移植版) 413.8 kB2,863.0 kB [文件列表]
hurd-i386 419.7 kB2,823.0 kB [文件列表]
i386 417.7 kB2,831.0 kB [文件列表]
kfreebsd-amd64 371.1 kB2,559.0 kB [文件列表]
kfreebsd-i386 419.9 kB2,819.0 kB [文件列表]
mips 390.8 kB3,238.0 kB [文件列表]
mips64el 387.0 kB3,212.0 kB [文件列表]
mipsel 402.8 kB3,242.0 kB [文件列表]
ppc64 (非官方移植版) 380.2 kB3,227.0 kB [文件列表]
ppc64el 381.4 kB3,035.0 kB [文件列表]
riscv64 (非官方移植版) 370.8 kB1,863.0 kB [文件列表]
s390x 332.9 kB2,703.0 kB [文件列表]
sparc64 (非官方移植版) 309.3 kB2,355.0 kB [文件列表]
x32 (非官方移植版) 361.4 kB2,319.0 kB [文件列表]