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Pakket: idba (1.1.3-3)

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iterative De Bruijn Graph short read assemblers

IDBA stands for iterative de Bruijn graph assembler. In computational sequence biology, an assembler solves the puzzle coming from large sequencing machines that feature many gigabytes of short reads from a large genome.

This package provides several flavours of the IDBA assembler, as they all share the same source tree but serve different purposes and evolved over time.

IDBA is the basic iterative de Bruijn graph assembler for second-generation sequencing reads. IDBA-UD, an extension of IDBA, is designed to utilize paired-end reads to assemble low-depth regions and use progressive depth on contigs to reduce errors in high-depth regions. It is a generic purpose assembler and especially good for single-cell and metagenomic sequencing data. IDBA-Hybrid is another update version of IDBA-UD, which can make use of a similar reference genome to improve assembly result. IDBA-Tran is an iterative de Bruijn graph assembler for RNA-Seq data.

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Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
alpha (unofficial port) 385,1 kB2.951,0 kB [overzicht]
amd64 371,8 kB2.571,0 kB [overzicht]
arm64 333,1 kB2.191,0 kB [overzicht]
armel 319,3 kB2.199,0 kB [overzicht]
armhf 329,5 kB1.575,0 kB [overzicht]
hppa (unofficial port) 413,8 kB2.863,0 kB [overzicht]
hurd-i386 419,7 kB2.823,0 kB [overzicht]
i386 417,7 kB2.831,0 kB [overzicht]
kfreebsd-amd64 371,1 kB2.559,0 kB [overzicht]
kfreebsd-i386 419,9 kB2.819,0 kB [overzicht]
mips 390,8 kB3.238,0 kB [overzicht]
mips64el 387,0 kB3.212,0 kB [overzicht]
mipsel 402,8 kB3.242,0 kB [overzicht]
ppc64 (unofficial port) 380,2 kB3.227,0 kB [overzicht]
ppc64el 381,4 kB3.035,0 kB [overzicht]
riscv64 (unofficial port) 370,8 kB1.863,0 kB [overzicht]
s390x 332,9 kB2.703,0 kB [overzicht]
sparc64 (unofficial port) 309,3 kB2.355,0 kB [overzicht]
x32 (unofficial port) 361,4 kB2.319,0 kB [overzicht]