Package: clustalw (2.1+lgpl-7 and others)

[ Source: clustalw  ]

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Tags: Biology: Clustal/ALN, Proteins, Field: field::biology, field::biology:bioinformatics, Implemented in: implemented-in::c++, interface::commandline, User Interface: Text-based Interactive, Role: role::program, scope::utility, Purpose: Comparing, Supports Format: works-with-format::plaintext, works-with::TODO

Other Packages Related to clustalw

• dep: libc6 (>= 2.29) [not alpha, ia64, riscv64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.31) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 13.1) [riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [not riscv64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• sug: clustalx

  Multiple alignment of nucleic acid and protein sequences (graphical interface)

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

• enh: bioperl-run

  BioPerl wrappers: scripts

• enh: emboss

  European molecular biology open software suite

• enh: t-coffee

  Multiple Sequence Alignment

Download clustalw

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.1+lgpl-7	276.6 kB	920.0 kB	[list of files]
amd64	2.1+lgpl-7	275.1 kB	787.0 kB	[list of files]
arm64	2.1+lgpl-7	241.9 kB	710.0 kB	[list of files]
hppa (unofficial port)	2.1+lgpl-7	259.6 kB	737.0 kB	[list of files]
ia64 (unofficial port)	2.1+lgpl-7	344.9 kB	1,516.0 kB	[list of files]
m68k (unofficial port)	2.1+lgpl-7	264.7 kB	790.0 kB	[list of files]
mips64el	2.1+lgpl-7	259.1 kB	941.0 kB	[list of files]
ppc64 (unofficial port)	2.1+lgpl-7	276.1 kB	982.0 kB	[list of files]
ppc64el	2.1+lgpl-7	276.5 kB	918.0 kB	[list of files]
riscv64	2.1+lgpl-7+b1	274.2 kB	622.0 kB	[list of files]
s390x	2.1+lgpl-7	247.5 kB	794.0 kB	[list of files]
sh4 (unofficial port)	2.1+lgpl-7	314.8 kB	714.0 kB	[list of files]
sparc64 (unofficial port)	2.1+lgpl-7	231.2 kB	747.0 kB	[list of files]
x32 (unofficial port)	2.1+lgpl-7	275.3 kB	750.0 kB	[list of files]