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[ Source: clustalx  ]

Package: clustalx (2.0.12-1 and others) [non-free]

Multiple alignment of nucleic acid and protein sequences (graphical interface)

This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: X Window System, Role: Program, Scope: Utility, Interface Toolkit: Lesstif/Motif, Purpose: Analysing, Comparing, Data Visualization, Supports Format: Plain Text, X Window System: Application

Other Packages Related to clustalx

  • depends
  • recommends
  • suggests
  • dep: lesstif2 [armel, ia64, mips, mipsel, powerpc]
    OSF/Motif 2.1 implementation released under LGPL
  • dep: libc6 (>= 2.10) [hppa]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.2.5) [amd64]
    dep: libc6 (>= 2.3.6-6~) [i386]
    dep: libc6 (>= 2.4) [s390]
    dep: libc6 (>= 2.6) [sparc]
    dep: libc6 (>= 2.7-1) [armel, mips, mipsel, powerpc]
  • dep: libc6.1 (>= 2.4) [alpha]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
    dep: libc6.1 (>= 2.7-1) [ia64]
  • dep: libgcc1 (>= 1:4.1.1) [alpha, amd64, i386, s390, sparc]
    GCC support library
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC support library
  • dep: libncbi6 (>= 6.1.20030421) [armel, ia64, mips, mipsel, powerpc]
    NCBI libraries for biology applications
  • dep: libqt4-xml (>= 4:4.5.3) [not armel, ia64, mips, mipsel, powerpc]
    Qt 4 XML module
  • dep: libqtcore4 (>= 4:4.5.3) [not armel, ia64, mips, mipsel, powerpc]
    Qt 4 core module
  • dep: libqtgui4 (>= 4:4.5.3) [not armel, ia64, mips, mipsel, powerpc]
    Qt 4 GUI module
  • dep: libstdc++6 (>= 4.2.1) [not armel, ia64, mips, mipsel, powerpc]
    The GNU Standard C++ Library v3
  • dep: libvibrant6a (>= 6.1.20060507) [armel, ia64, mips, mipsel, powerpc]
    NCBI libraries for graphic biology applications
  • dep: libx11-6 [armel, ia64, mips, mipsel, powerpc]
    X11 client-side library
  • dep: libxmu6 [armel, ia64, mips, mipsel, powerpc]
    X11 miscellaneous utility library
  • dep: libxt6 [armel, ia64, mips, mipsel, powerpc]
    X11 toolkit intrinsics library
  • sug: boxshade
    Pretty-printing of multiple sequence alignments
  • sug: clustalw [not armel, ia64, mips, mipsel, powerpc]
    global multiple nucleotide or peptide sequence alignment
  • sug: texshade
    Package not available
    or texlive-latex-extra
    TeX Live: LaTeX supplementary packages

Download clustalx

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 2.0.12-1 608.2 kB1880 kB [list of files]
amd64 2.0.12-1 542.4 kB1448 kB [list of files]
armel 1.83-4 243.7 kB692 kB [list of files]
hppa 2.0.12-1 608.7 kB1464 kB [list of files]
i386 2.0.12-1 520.0 kB1396 kB [list of files]
ia64 1.83-4 324.3 kB1076 kB [list of files]
mips 1.83-4 253.9 kB808 kB [list of files]
mipsel 1.83-4 258.8 kB824 kB [list of files]
powerpc 1.83-4 246.4 kB720 kB [list of files]
s390 2.0.12-1 510.1 kB1400 kB [list of files]
sparc 2.0.12-1 574.8 kB1512 kB [list of files]