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[ Source: clustalw  ]

Paketti: clustalw (2.0.12-1 ja muut) [non-free]

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Tagit: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Text-based Interactive, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Muut pakettiin clustalw liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.1.3) [i386]
    GNU-C-kirjasto: jaetut kirjastot
    myös näennäispaketti, jonka toteuttaa libc6-udeb
    dep: libc6 (>= 2.2) [hppa]
    dep: libc6 (>= 2.2.5) [amd64]
    dep: libc6 (>= 2.4) [armel, s390]
    dep: libc6 (>= 2.6) [sparc]
    dep: libc6 (>= 2.7-1) [mips, mipsel, powerpc]
  • dep: libc6.1 (>= 2.2) [ia64]
    GNU-C-kirjasto: jaetut kirjastot
    myös näennäispaketti, jonka toteuttaa libc6.1-udeb
    dep: libc6.1 (>= 2.4) [alpha]
  • dep: libgcc1 (>= 1:4.1.1) [ei armel, hppa]
    GCC:n apukirjasto
    dep: libgcc1 (>= 1:4.4.0) [armel]
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC:n apukirjasto
  • dep: libstdc++6 (>= 4.2.1) [ei armel]
    GNU Standard C++ -kirjasto, versio 3
    dep: libstdc++6 (>= 4.4.0) [armel]
  • dep: libunwind7 [ia64]
    A library to determine the call-chain of a program - runtime
  • sug: clustalx
    Multiple alignment of nucleic acid and protein sequences (graphical interface)
  • sug: seaview
    Multiplatform interface for sequence alignment and phylogeny

Imuroi clustalw

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Versio Paketin koko Koko asennettuna Tiedostot
alpha 2.0.12-1 368.9 kt1064 kt [tiedostoluettelo]
amd64 2.0.12-1 332.7 kt880 kt [tiedostoluettelo]
armel 2.0.12-1 320.4 kt804 kt [tiedostoluettelo]
hppa 2.0.12-1 373.9 kt900 kt [tiedostoluettelo]
i386 2.0.12-1 318.4 kt852 kt [tiedostoluettelo]
ia64 2.0.12-1 464.1 kt1532 kt [tiedostoluettelo]
mips 2.0.10-1 330.3 kt1104 kt [tiedostoluettelo]
mipsel 2.0.10-1 329.9 kt1040 kt [tiedostoluettelo]
powerpc 2.0.10-1 336.5 kt876 kt [tiedostoluettelo]
s390 2.0.12-1 318.9 kt832 kt [tiedostoluettelo]
sparc 2.0.12-1 351.2 kt948 kt [tiedostoluettelo]