[  etch  ] [  etch-m68k  ] [  lenny  ] [  squeeze  ] [  sid  ]
[ Source: clustalw  ]

Package: clustalw (2.0.12-1 and others) [non-free]

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Text-based Interactive, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Other Packages Related to clustalw

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.1.3) [i386]
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.2) [hppa]
    dep: libc6 (>= 2.2.5) [amd64]
    dep: libc6 (>= 2.4) [armel, s390]
    dep: libc6 (>= 2.6) [sparc]
    dep: libc6 (>= 2.7-1) [mips, mipsel, powerpc]
  • dep: libc6.1 (>= 2.2) [ia64]
    Embedded GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
    dep: libc6.1 (>= 2.4) [alpha]
  • dep: libgcc1 (>= 1:4.1.1) [not armel, hppa]
    GCC támogató programkönyvtár
    dep: libgcc1 (>= 1:4.4.0) [armel]
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC támogató programkönyvtár
  • dep: libstdc++6 (>= 4.2.1) [not armel]
    A GNU Szabványos C++ Programkönyvtár v3
    dep: libstdc++6 (>= 4.4.0) [armel]
  • dep: libunwind7 [ia64]
    A library to determine the call-chain of a program - runtime
  • sug: clustalx
    Multiple alignment of nucleic acid and protein sequences (graphical interface)
  • sug: seaview
    Multiplatform interface for sequence alignment and phylogeny

Download clustalw

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 2.0.12-1 368.9 kB1064 kB [list of files]
amd64 2.0.12-1 332.7 kB880 kB [list of files]
armel 2.0.12-1 320.4 kB804 kB [list of files]
hppa 2.0.12-1 373.9 kB900 kB [list of files]
i386 2.0.12-1 318.4 kB852 kB [list of files]
ia64 2.0.12-1 464.1 kB1532 kB [list of files]
mips 2.0.10-1 330.3 kB1104 kB [list of files]
mipsel 2.0.10-1 329.9 kB1040 kB [list of files]
powerpc 2.0.10-1 336.5 kB876 kB [list of files]
s390 2.0.12-1 318.9 kB832 kB [list of files]
sparc 2.0.12-1 351.2 kB948 kB [list of files]