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[ Bron: clustalw  ]

Pakket: clustalw (2.0.9-1 en anderen) [non-free]

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

For details and citation purposes see paper "Clustal W and Clustal X version 2.0", Larkin M., et al. Bioinformatics 2007 23(21):2947-2948

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Bioinformatics, Implemented in: C++, User Interface: Command Line, Text-based Interactive, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Andere aan clustalw gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.3.1-1) [m68k]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6-udeb
    dep: libc6 (>= 2.7-1) [niet alpha, ia64, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1) [niet arm, hppa, m68k]
    GCC support bibliotheek
    dep: libgcc1 (>= 1:4.3) [arm]
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC support bibliotheek
  • dep: libstdc++6 (>= 4.2.1) [niet m68k]
    De GNU stdc++ bibliotheek versie 3
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    Een bibliotheek om de aanroep-ketting van een programma te bepalen - runtime
  • sug: clustalx
    GUI for Clustal W
  • sug: seaview
    Multiple sequence alignment editor

clustalw downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
alpha 2.0.9-1 345,6 kB1036 kB [overzicht]
amd64 2.0.9-1 320,2 kB852 kB [overzicht]
arm 2.0.9-1 367,2 kB904 kB [overzicht]
hppa 2.0.9-1 357,8 kB864 kB [overzicht]
i386 2.0.9-1 306,4 kB824 kB [overzicht]
ia64 2.0.9-1 446,0 kB1476 kB [overzicht]
m68k 1.83-1 147,2 kB364 kB [overzicht]
mips 2.0.9-1 322,4 kB1080 kB [overzicht]
mipsel 2.0.9-1 321,8 kB1080 kB [overzicht]
powerpc 2.0.9-1 327,6 kB856 kB [overzicht]
s390 2.0.9-1 303,9 kB804 kB [overzicht]
sparc 2.0.9-1 339,9 kB920 kB [overzicht]