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[ Bron: clustalw  ]

Pakket: clustalw (2.0.12-1 en anderen) [non-free]

global multiple nucleotide or peptide sequence alignment

This program performs an alignment of multiple nucleotide or amino acid sequences. It recognizes the format of input sequences and whether the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output format may be selected from in various formats for multiple alignments such as Phylip or FASTA. Clustal W is very well accepted.

The output of Clustal W can be edited manually but preferably with an alignment editor like SeaView or within its companion Clustal X. When building a model from your alignment, this can be applied for improved database searches. The Debian package hmmer creates such in form of an HMM.

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Text-based Interactive, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Andere aan clustalw gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.1.3) [i386]
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
    dep: libc6 (>= 2.2) [hppa]
    dep: libc6 (>= 2.2.5) [amd64]
    dep: libc6 (>= 2.4) [armel, s390]
    dep: libc6 (>= 2.6) [sparc]
    dep: libc6 (>= 2.7-1) [mips, mipsel, powerpc]
  • dep: libc6.1 (>= 2.2) [ia64]
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6.1-udeb
    dep: libc6.1 (>= 2.4) [alpha]
  • dep: libgcc1 (>= 1:4.1.1) [niet armel, hppa]
    GCC support bibliotheek
    dep: libgcc1 (>= 1:4.4.0) [armel]
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC support bibliotheek
  • dep: libstdc++6 (>= 4.2.1) [niet armel]
    De GNU stdc++ bibliotheek versie 3
    dep: libstdc++6 (>= 4.4.0) [armel]
  • dep: libunwind7 [ia64]
    Een bibliotheek om de aanroep-ketting van een programma te bepalen - runtime
  • sug: clustalx
    Multiple alignment of nucleic acid and protein sequences (graphical interface)
  • sug: seaview
    Multiplatform interface for sequence alignment and phylogeny

clustalw downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
alpha 2.0.12-1 368,9 kB1064 kB [overzicht]
amd64 2.0.12-1 332,7 kB880 kB [overzicht]
armel 2.0.12-1 320,4 kB804 kB [overzicht]
hppa 2.0.12-1 373,9 kB900 kB [overzicht]
i386 2.0.12-1 318,4 kB852 kB [overzicht]
ia64 2.0.12-1 464,1 kB1532 kB [overzicht]
mips 2.0.10-1 330,3 kB1104 kB [overzicht]
mipsel 2.0.10-1 329,9 kB1040 kB [overzicht]
powerpc 2.0.10-1 336,5 kB876 kB [overzicht]
s390 2.0.12-1 318,9 kB832 kB [overzicht]
sparc 2.0.12-1 351,2 kB948 kB [overzicht]