Software Packages in "sid", Subsection science
- abinit (5.3.4.dfsg-3)
- A package for electronic structure calculations
- achilles (2-8)
- An artificial life and evolution simulator
- adun.app (0.8.2-1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.6-3+b2 [m68k], 0.6-3 [hurd-i386])
- Molecular Simulator for GNUstep
- aeskulap (0.2.2b1-1)
- medical image viewer and DICOM network client
- amap-align (2.2-1)
- Protein multiple alignment by sequence annealing
- apbs (0.5.1-2 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.4.0-2 [m68k])
- Adaptive Poisson Boltzmann Solver
- arb (0.0.20071207.1-2 [i386], 0.0.20050526-7 [sparc]) [non-free]
- Integrated package for data handling and analysis
- arb-common (0.0.20071207.1-2) [non-free]
- Integrated package for data handling and analysis
- arb-doc (0.0.20071207.1-2) [non-free]
- Integrated package for data handling and analysis
- astronomical-almanac (5.6-2+b1 [sparc], 5.6-2 [alpha, amd64, arm, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390])
- astronomical almanac - calculate planet and star positions
- autodock (4.0.1-3)
- analysis of ligand binding to protein structure
- autogrid (4.0.1-3)
- pre-calculate binding of ligands to their receptor
- avce00 (2.0.0-1)
- Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.
- avida-base (2.0b7-4.1 [alpha, amd64, arm, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.0b7-4 [m68k])
- Auto-adaptive genetic system for Artificial Life research
- avida-qt-viewer (2.0b7-4.1 [alpha, amd64, arm, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.0b7-4 [m68k])
- qt viewer for avida
- avida-viewer (2.0b7-4.1 [alpha, amd64, arm, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.0b7-4 [m68k])
- ncurses viewer for avida
- biococoa.app (1.6.0-7 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 1.6.0-3 [hurd-i386])
- Sequence file format conversion for GNUstep
- biomode (1.002-7)
- [Biology] An Emacs mode to edit genetic data
- bioperl (1.5.2.102-3)
- Perl tools for computational molecular biology
- biosquid (1.9g+cvs20050121-2)
- utilities for biological sequence analysis
- bkchem (0.12.0-1)
- Python based chemical structures editor
- blast2 (1:2.2.18.20080302-1 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1:2.2.17.20070822-5 [m68k], 1:2.2.17.20070822-4 [kfreebsd-amd64, kfreebsd-i386])
- Basic Local Alignment Search Tool
- bodr (8-1)
- Blue Obelisk Data Repository
- boinc-app-seti (5.13+cvs20060510-4)
- SETI@home application for the BOINC client
- boxshade (3.3.1-3)
- Pretty-printing of multiple sequence alignments
- cassbeam (1.0-7+b1 [alpha, amd64, arm, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 1.0-7 [armel, hurd-i386])
- A program for Cassegrain antenna modelling
- celestia (1.5.0-3)
- A real-time visual space simulation
- celestia-common (1.5.0-3)
- Datafiles for Celestia, a real-time visual space simulation
- celestia-glut (1.5.0-3 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.5.0-1 [kfreebsd-amd64], 1.4.1+cvs20070626-3 [m68k])
- A real-time visual space simulation (GLUT frontend)
- cernlib (2006.dfsg.2-13)
- CERNLIB data analysis suite - general use metapackage
- cernlib-core (2006.dfsg.2-13)
- CERNLIB data analysis suite - main libraries and programs
- (2006.dfsg.2-13)
- CERNLIB data analysis suite - extra programs
- cernlib-montecarlo (2006.dfsg.2-5)
- CERNLIB Monte Carlo libraries
- chemtool (1.6.11-2)
- Chemical structures drawing program
- clustalw (2.0.6-1 [hppa, ia64, powerpc, s390, sparc], 2.0.5-1 [alpha, amd64, arm, i386, mips, mipsel], 1.83-1 [m68k]) [non-free]
- global multiple nucleotide or peptide sequence alignment
- clustalw-mpi (0.14-1) [non-free]
- MPI-distributed global sequence alignment with ClustalW
- clustalx (1.83-4 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.83-1 [m68k]) [non-free]
- GUI for Clustal W
- complearn-gui (1.0.6-4 [amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, sparc], 0.9.7-1 [m68k])
- interactive 3d data mining tool and demo for universal machine learning
- complearn-tools (1.1.3-1)
- complearn machine-learning command-line utilities
- ctsim (4.5.5-1)
- Computed tomography simulator
- ctsim-help (4.5.5-1)
- Online help file for CTSim
- dcmtk (3.5.4-3)
- The OFFIS DICOM toolkit command line utilities
- dialign (2.2.1-2)
- Segment-based multiple sequence alignment
- dialign-t (0.2.2.dfsg-1)
- Segment-based multiple sequence alignment
- dialign-t-data (0.2.2.dfsg-1)
- Common data files for dialign-t
- dialign-t-doc (0.2.2-1) [non-free]
- PDF, HTML and PS Documentation for dialign-t
- dicomnifti (2.28.11-1)
- converts DICOM files into the NIfTI format
- drawmap (2.5-3)
- draws customized maps, using raw USGS data files
- dsdp (5.8-4 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 5.8-3 [hurd-i386], 5.8-2 [m68k])
- Software for Semidefinite Programming
- dx (1:4.4.4-1 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1:4.4.0-3 [m68k])
- OpenDX (IBM Visualization Data Explorer) - main package
- dxsamples (4.2.0-1)
- Sample programs for the OpenDX Data Explorer
- e00compr (1.0.0-7 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 1.0.0-6 [hurd-i386])
- a program to read/write Arc/Info compressed E00 files
- easychem (0.6-5)
- Draw high-quality molecules and 2D chemical formulas
- embassy-domainatrix (0.1.0-1)
- Extra EMBOSS commands to handle domain classification file
- embassy-domalign (0.1.0-1)
- Extra EMBOSS commands for protein domain alignment
- emboss (5.0.0-6)
- The European Molecular Biology Open Software Suite
- emboss-data (5.0.0-6)
- Data files for the EMBOSS package
- emboss-explorer (2.2.0-5)
- web-based GUI to EMBOSS
- engauge-digitizer (4.1-2 [alpha, amd64, arm, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, sparc], 4.1-1 [m68k, mipsel])
- interactively extracts numbers from bitmap graphs or maps
- ent (1.1debian-1)
- pseudorandom number sequence test program
- epigrass (1.5.1-3)
- scientific tool for simulations and scenario analysis in network epidemiology
- exonerate (1.4.0-1)
- tool for comparison of long biological sequences
- extrema (4.3.5-1)
- powerful visualization and data analysis tool
- fastdnaml (1.2.2-7)
- [Biology] Tool for construction of phylogenetic trees of DNA sequences
- fastlink (4.1P-fix94b-1)
- A faster version of pedigree programs of Linkage
- fityk (0.8.6-1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.8.5-1 [m68k])
- general-purpose nonlinear curve fitting and data analysis
- fsl (4.0.4-1 [hppa, i386, ia64, s390, sparc], 4.0.3-2 [alpha, amd64, powerpc], 4.0.2-3 [arm, mipsel]) [non-free]
- analysis tools for FMRI, MRI and DTI brain imaging
- fslview (3.0+4.0.2-4 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.0+4.0.2-3 [arm], 3.0+4.0.1-2 [m68k])
- viewer for (f)MRI and DTI data
- fv (3.0-16)
- a tool for viewing and editing FITS format files
- g3data (1:1.5.1-1)
- extract data from scanned graphs
- gabedit (2.1.0-1)
- graphical user interface to Ab Initio packages
- garlic (1.6-1)
- A visualization program for biomolecules
- gausssum (2.1.4-1)
- parse and display Gaussian, GAMESS, and etc's output
- gchempaint (0.8.7-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.6.6-3 [m68k])
- 2D chemical structures editor for the GNOME2 desktop
- gcrystal (0.8.7-1)
- lightweight crystal structures visualizer
- gcu-bin (0.8.7-1)
- GNOME chemistry utils (helper applications)
- gcu-plugin (0.8.7-1)
- GNOME chemistry utils (browser plugin)
- gcx (0.9.11-3)
- astronomical image processing and photometry gtk+ application
- gdal-bin (1.5.1-3+b1 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.5.0-4 [kfreebsd-amd64, kfreebsd-i386], 1.4.2-1 [m68k])
- Geospatial Data Abstraction Library - Utility programs
- gdis (0.89-2)
- molecular display
- gdpc (2.2.4-3)
- visualiser of molecular dynamic simulations
- gdpc-examples (2.2.4-3)
- example files for the gdpc program
- geant321 (1:3.21.14.dfsg-8)
- [Physics] Particle detector description and simulation tool
- geant321-data (1:3.21.14.dfsg-8)
- [Physics] Data for GEANT 3.21 detector simulator
- genesis (2.2.1-12+b1 [alpha, amd64, arm, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.2.1-12 [armel, m68k])
- general-purpose neural simulator
- geotiff-bin (1.2.4-3)
- the GeoTIFF library -- tools
- gff2aplot (2.0-5)
- pair-wise alignment-plots for genomic sequences in PostScript
- gff2ps (0.98d-3)
- produces PostScript graphical output from GFF-files
- glam2 (1058-1)
- gapped protein motifs from unaligned sequences
- gliese (1.1-15) [non-free]
- stellar data set from the Third Catalogue of Nearby Stars
- gmt (4.2.0-1+b1 [alpha, amd64, arm, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 4.2.0-1 [armel], 4.0-2 [hurd-i386])
- Generic Mapping Tools
- gmt-tutorial-pdf (4.2.0-1)
- Tutorial for GMT, the Generic Mapping Tools (PDF)
- gperiodic (2.0.10-3)
- periodic table application
- gpib-modules-source (3.2.10-2)
- kernel modules for various GPIB boards
- gpiv (0.3.1-2+b2 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.3.1-2+b1 [m68k], 0.3.1-2 [armel])
- Graphic User Interface program for Particle Image Velocimetry
- gpivtools (0.3.3-1+b2 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.3.3-1+b1 [m68k], 0.3.3-1 [armel, kfreebsd-amd64, kfreebsd-i386])
- Command line programs for Particle Image Velocimetry
- gpx2shp (0.69-3)
- convert GPS or GPX file to ESRI Shape file
- grass (6.2.3-2.1 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 6.2.3-2 [kfreebsd-amd64, kfreebsd-i386], 6.2.2-2 [m68k])
- Geographic Resources Analysis Support System
- grass-doc (6.2.3-2.1)
- Geographic Resources Analysis Support System documentation
- gri (2.12.16-3 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.12.16-1 [hurd-i386, m68k])
- a language for scientific illustration
- gri-el (2.12.16-3)
- Emacs major-mode for gri, a language for scientific graphics
- gromacs (3.3.3-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.3.2-2 [m68k])
- Molecular dynamics simulator, with building and analysis tools
- gromacs-data (3.3.3-2)
- GROMACS molecular dynamics sim, data and documentation
- gromacs-lam (3.3.3-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.3.2-2 [m68k])
- Molecular dynamics sim, binaries for LAM-MPI parallelization
- gromacs-mpich (3.3.3-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.3.2-2 [m68k])
- Molecular dynamics sim, binaries for MPICH parallelization
- gromacs-openmpi (3.3.3-2)
- Molecular dynamics sim, binaries for OpenMPI parallelization
- gwyddion (2.9-3)
- Scanning Probe Microscopy visualization and analysis
- gwyddion-common (2.9-3)
- Gwyddion SPM analysis - common files
- gwyddion-plugins (2.9-3)
- Gwyddion SPM analysis - plugins
- h5utils (1.10-7+b1 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.10-7 [armel, kfreebsd-amd64, kfreebsd-i386, m68k])
- HDF5 files visualization tools
- harminv (1.3.1-1.1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.3.1-1 [hurd-i386, m68k])
- extraction of complex frequencies and amplitudes from time series
- hdf5-tools (1.6.6-4 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.6.5-5 [m68k])
- Hierarchical Data Format 5 (HDF5) - Runtime tools
- hmmer (2.3.2-4 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 2.1.4 [hurd-i386])
- profile hidden Markov models for protein sequence analysis
- hmmer-pvm (2.3.2-4)
- HMMER programs with PVM (Parallel Virtual Machine) support
- hodie (1.4-8)
- prints the date in latin
- horae (066-3) [contrib]
- interactive graphical processing and analysis of EXAFS data
- ifeffit (2:1.2.10a-5 [alpha, amd64, arm, i386, ia64, mips, mipsel, powerpc, sparc], 2:1.2.10a-2 [hppa], 1:1.3.0-4 [m68k]) [contrib]
- An interactive program for XAFS analysis
- ifrit (3.2.2-2)
- a powerful tool for visualizing 3-dimensional data sets
- imagej (1.40a-1) [contrib]
- Image processing program inspired by NIH Image for the Macintosh
- imview (1.1.9c-1)
- Image viewing and analysis application
- indi (4:3.5.9-1)
- Instrument Neutral Distributed Interface for astronomical devices
- israndom (1.0.7-2)
- nonclassical randomness test using data compressors
- kalign (2.03-2)
- Global and progressive multiple sequence alignment
- kalzium (4:3.5.9-1)
- chemistry teaching tool for KDE
- kalzium-data (4:3.5.9-1)
- data files for Kalzium
- kstars (4:3.5.9-1)
- desktop planetarium for KDE
- kstars-data (4:3.5.9-1)
- data files for KStars desktop planetarium
- kxterm (2006.dfsg.2-13 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 2006.dfsg.2-2 [m68k])
- CERNLIB data analysis suite - KUIP terminal emulator
- libarb (0.0.20071207.1-2 [i386], 0.0.20050526-7 [sparc]) [non-free]
- Integrated package for data handling and analysis
- libbio-ruby (1.1.0-1)
- bioruby tools for computational molecular biology
- libbio-ruby1.8 (1.1.0-1)
- bioruby tools for computational molecular biology
- libgeotiff-epsg (1.2.4-3) [non-free]
- the GeoTIFF library -- EPSG Geodetic Parameter Dataset
- libghemical-data (2.96-2)
- Molecular Modelling Library (Data Files)
- libgpib-bin (3.2.10-2+b1 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 3.2.10-2 [m68k])
- libgpib support applications and configuration
- libpostgis-java (1.3.3-1)
- geographic objects support for PostgreSQL -- JDBC support
- libqgis1 (0.9.1-1) [debports]
- QGIS Geographic Information System - shared library
- libqgis1-dev (0.9.1-1) [debports]
- QGIS Geographic Information System - development files
- loki (2.4.7.4-4)
- MCMC linkage analysis on general pedigrees
- mafft (6.240-1)
- Multiple alignment program for amino acid or nucleotide sequences
- mayavi (1.5-5)
- A scientific data visualization system
- mayavi2 (2.1.1-2+b1 [alpha, amd64, arm, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.1.1-2 [armel])
- A scientific visualization package for 2-D and 3-D data
- meep (0.10-2.1+b1 [alpha, amd64, arm, i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.10-2.1 [armel, hppa, kfreebsd-amd64, kfreebsd-i386], 0.10-2+b1 [m68k])
- MIT Electromagnetic Equation Propagation
- meep-mpi (0.10-2.1+b1 [alpha, amd64, arm, i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.10-2.1 [armel, hppa, kfreebsd-amd64, kfreebsd-i386], 0.10-2+b1 [m68k])
- MIT Electromagnetic Equation Propagation, parallel (mpich) version
- melting (4.2h-2)
- computing the melting temperature of nucleic acid duplex
- melting-gui (4.2h-2)
- Graphical user interface for melting
- merkaartor (0.0.10-1 [alpha, amd64, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, powerpc, s390, sparc], 0.0.9-2 [arm, mips, mipsel])
- map editor for OpenStreetMap.org
- minc-tools (2.0.14-2+b2 [alpha, amd64, hppa, i386, ia64, mips, powerpc, s390], 2.0.14-2+b1 [armel, kfreebsd-amd64, mipsel], 2.0.14-2 [kfreebsd-i386], 1.5-1 [arm, m68k, sparc])
- MNI medical image format tools
- mipe (1.1-2)
- Tools to store PCR-derived data
- mn-fit (5.13-6 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 5.13-4 [m68k])
- interactive analysis package for fitting data and histograms
- mn-fit-common (5.13-6)
- common files for Mn_Fit
- molphy (2.3b3-4 [alpha, amd64, hppa, i386, ia64, mips, powerpc, s390, sparc], 2.3b3-3 [arm, mipsel]) [non-free]
- Program Package for MOLecular PHYlogenetics
- montecarlo-base (2006.dfsg.2-5)
- [Physics] Common files for CERNLIB Monte Carlo libraries
- montecarlo-data (2006.dfsg.2-5)
- [Physics] data for CERNLIB Monte Carlo libraries
- mopac7-bin (1.13-2)
- Semi-empirical Quantum Chemistry Library
- mozilla-biofox (1.1.4-3)
- extension of bioinformatics tools to Iceape and Iceweasel browsers
- mpb (1.4.2-11.1+b1 [alpha, amd64, arm, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.4.2-11.1 [armel, hppa, kfreebsd-amd64, kfreebsd-i386], 1.4.2-11 [m68k])
- MIT Photonic-Bands
- mpb-mpi (1.4.2-11.1+b1 [alpha, amd64, arm, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.4.2-11.1 [armel, hppa, kfreebsd-amd64, kfreebsd-i386], 1.4.2-11 [m68k])
- MIT Photonic-Bands, parallel (mpich) version
- mpqc (2.3.1-3 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.3.1-1 [hurd-i386, m68k])
- The Massively Parallel Quantum Chemistry Program
- mpqc-support (2.3.1-3 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.3.1-1 [hurd-i386, m68k])
- Support programs and tools for MPQC
- mssstest (2.0-2) [non-free]
- Normalisation of disease scores for patients with Multiple Sclerosis
- mummer (3.20-2)
- Efficient sequence alignment of full genomes
- muscle (3.70+fix1-2)
- Multiple alignment program of protein sequences
- ncbi-epcr (2.3.9-1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 1.2.0-3 [hurd-i386])
- Tool to test a DNA sequence for the presence of sequence tagged sites
- ncbi-tools-bin (6.1.20080302-1 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 6.1.20070822-5 [m68k], 6.1.20070822-4 [kfreebsd-amd64, kfreebsd-i386])
- NCBI libraries for biology applications (text-based utilities)
- ncbi-tools-x11 (6.1.20080302-1 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 6.1.20070822-5 [m68k], 6.1.20070822-4 [kfreebsd-amd64, kfreebsd-i386])
- NCBI libraries for biology applications (X-based utilities)
- nco (3.9.0-1.1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.9.0-1 [m68k])
- command-line operators to analyze netCDF files
- necpp (1.2.6+cvs20070816-1.1 [alpha, amd64, arm, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mipsel, powerpc, s390, sparc], 1.2.6+cvs20070816-1 [m68k, mips])
- NEC2 Evolution Antenna Modelling System
- netcdf-bin (1:3.6.2-3.1)
- Programs for reading and writing NetCDF files
- njplot (2.2-1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.0-1 [m68k])
- A tree drawing program
- ogdi-bin (3.2.0~beta1-3.1)
- Open Geographic Datastore Interface Library -- utilities
- openbabel (2.1.1-4 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 2.0.2-1 [hurd-i386])
- Convert and manipulate chemical data files
- openjump (1.0-3) [contrib]
- Open Java Unified Mapping Platform JUMP
- openmx (3.2.4.dfsg-3 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.2.4.dfsg-2 [hurd-i386, m68k])
- Package for nano-scale material simulations
- openuniverse (1.0beta3.1+dfsg-0.1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.0beta3.1-6 [hurd-i386, m68k])
- 3D Universe Simulator
- openuniverse-common (1.0beta3.1+dfsg-0.1)
- 3D Universe Simulator data files
- opj2dat (20080225-2)
- OriginLab Origin project files to data files converter
- paje.app (1.97+cvs20080110-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 1.4.0-5 [hurd-i386])
- generic visualization tool (Gantt chart and more)
- paw (1:2.14.04.dfsg.2-4 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1:2.14.04.dfsg.2-1 [m68k])
- Physics Analysis Workstation - a graphical analysis program
- paw++ (1:2.14.04.dfsg.2-4 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1:2.14.04.dfsg.2-1 [m68k])
- Physics Analysis Workstation (Lesstif-enhanced version)
- paw-common (1:2.14.04.dfsg.2-4)
- Physics Analysis Workstation (common files)
- paw-demos (1:2.14.04.dfsg.2-4)
- Physics Analysis Workstation examples and tests
- perlprimer (1.1.14-2)
- Graphical design of primers for PCR
- php5-gpib (3.2.10-2+b1 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 3.2.10-2 [m68k])
- libgpib PHP5 bindings
- phylip (1:3.67-2 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1:3.6.1-2 [m68k]) [non-free]
- [Biology] A package of programs for inferring phylogenies
- planets (0.1.13-5)
- Gravitation simulation of planetary bodies
- poa (2.0+20060928-2)
- Partial Order Alignment for multiple sequence alignment
- polyxmass (0.9.2)
- Mass spectrometry software framework
- polyxmass-bin (0.9.8-1)
- Mass spectrometry framework - GUI program
- polyxmass-bin-common (0.9.8-1)
- Mass spectrometry framework - GUI program arch-indep data
- polyxmass-common (0.8.7-2)
- Mass spectrometry framework - essential polymer chemistry data
- polyxmass-data (0.8.7-1)
- Mass spectrometry framework - supplementary chemical data
- praat (5.0.22-1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 5.0.7-1 [m68k])
- program for speech analysis and synthesis
- primer3 (1.1.4-1 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, powerpc, s390, sparc], 1.1.3-1 [arm, hurd-i386, mipsel], 1.1.1-1 [m68k])
- Tool to design flanking oligo nucleotides for DNA amplification
- probcons (1.12-4)
- PROBabilistic CONSistency-based multiple sequence alignment
- (1.12-4)
- Extra programs from the probcons package
- proda (1.0-4)
- multiple alignment of protein sequences
- proj (4.6.0-1)
- Cartographic projection filter and library
- psi3 (3.3.0-2 [alpha, amd64, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 3.2.3-1 [arm, hurd-i386, m68k])
- Quantum Chemical Program Suite
- pymol (1.1~beta3-3 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.1~beta3-2 [hurd-i386, m68k])
- An OpenGL Molecular Graphics System written in Python
- python-pyepl (1.0.29-2)
- library for coding psychology experiments in Python
- python-pyepl-common (1.0.29-2)
- library for coding psychology experiments in Python
- python-pyode (1.2.0-2)
- open-source Python bindings for The Open Dynamics Engine
- qfits-tools (6.2.0-1)
- FITS manipulation tools
- qgis (0.9.1-1) [debports]
- Geographic Information System (GIS)
- qgis-plugin-grass (0.9.1-1) [debports]
- Plugin for accessing GRASS data from QGIS
- qmc (0.94-3+b1 [alpha, arm, hppa, hurd-i386, i386, ia64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 0.94-3 [amd64, armel, kfreebsd-amd64])
- Quine McClusky Simplification Tool
- qsearch-tools (1.0.8-1)
- qsearch machine-learning command-line utilities
- qtdmm (0.8.12-2.1)
- GUI for digital multimeter
- rasmol (2.7.3.1-3)
- Visualize biological macromolecules
- raster3d (2.7s-1+b1 [mips, mipsel], 2.7s-1 [alpha, amd64, arm, hppa, i386, ia64, powerpc, s390, sparc]) [non-free]
- tools for generating images of proteins or other molecules
- readseq (1-7)
- [Biology] Conversion between sequence formats
- rnahybrid (2.1-1)
- Fast and effective prediction of microRNA/target duplexes
- robot-player (2.0.4-3.2 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 2.0.4-3 [m68k])
- Networked server for robots and sensors
- robot-player-dev (2.0.4-3.2)
- Networked server for robots and sensors - development package
- robot-player-doc (2.0.4-3.2)
- Networked server for robots and sensors (documentation)
- saods9 (4.0b7-2)
- image display tool for astronomy
- seaview (1:2.4-1)
- Multiple sequence alignment editor
- seesat5 (0.90.10-1.1)
- a satellite location program
- (2.4.4-1)
- source extractor for astronomical images
- shogun-dbg (0.6.1-2)
- Large Scale Machine Learning Toolbox
- shogun-octave (0.6.1-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, sparc], 0.4.4-2 [kfreebsd-i386])
- Large Scale Machine Learning Toolbox
- shogun-octave-modular (0.6.1-2)
- Large Scale Machine Learning Toolbox
- shogun-python (0.6.1-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, sparc], 0.4.4-2 [kfreebsd-i386])
- Large Scale Machine Learning Toolbox
- shogun-python-modular (0.6.1-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, sparc], 0.4.4-2 [kfreebsd-i386])
- Large Scale Machine Learning Toolbox
- shogun-r (0.6.1-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, sparc], 0.4.4-2 [kfreebsd-i386])
- Large Scale Machine Learning Toolbox
- shogun-readline (0.6.1-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, mips, mipsel, powerpc, s390, sparc], 0.4.4-2 [kfreebsd-i386])
- Large Scale Machine Learning Toolbox
- sibsim4 (0.16-1)
- align expressed RNA sequences on a DNA template
- sigma-align (1.1.1-3)
- Simple greedy multiple alignment of non-coding DNA sequences
- sim4 (0.0.20030921-3)
- tool for aligning cDNA and genomic DNA
- sixpack (1:0.62-1) [contrib]
- full-featured package for XAS analysis
- slang-xfig (0~svn.192-4 [alpha, amd64, arm, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mipsel, powerpc, s390, sparc], 0~svn.114-4 [mips])
- produce plots and drawings through Xfig's fig2dev in S-Lang
- spacechart (0.9.5-14) [debports]
- Star map viewer and navigator
- spass (2.1-3+b1 [mips], 2.1-3 [alpha, amd64, arm, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mipsel, powerpc, s390, sparc])
- An automated theorem prover for first-order logic with equality
- ssystem (1.6-17)
- 3D solar system simulator
- stage (2.0.3-2)
- Robot simulation for Player
- stardata-common (0.5)
- Common framework to manage astronomy packages
- starplot (0.95.4-5)
- 3-dimensional perspective star map viewer
- stellarium (0.9.1-3 [amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.9.1-2.1 [alpha, kfreebsd-amd64, kfreebsd-i386], 0.9.0-2 [m68k])
- real-time photo-realistic sky generator
- stellarium-data (0.9.1-3)
- datafiles for Stellarium, a real-time photo-realistic sky generator
- survex (1.0.39.1-2.1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 1.0.39.1-2 [hurd-i386])
- cave surveying and mapping software
- survex-aven (1.0.39.1-2.1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 1.0.39.1-2 [hurd-i386])
- sophisticated cave survey viewer for Survex
- survex-svxedit (1.0.39.1-2.1)
- survey data editor for Survex
- t-coffee (5.31-1)
- Multiple Sequence Alignment
- t-coffee-examples (5.31-1)
- annotated examples for the use of T-Coffee
- tcd-utils (20061127-2)
- convert Tide Constituent Database (TCD) files
- tessa (0.3.1-4+b2 [alpha, amd64, arm, hppa, i386, ia64, mipsel, powerpc, s390, sparc], 0.3.1-4+b1 [armel, kfreebsd-amd64, kfreebsd-i386, mips], 0.3.1-4 [m68k])
- simulation of 3D optical systems with the FDTD method
- tessa-mpi (0.3.1-4+b2 [alpha, amd64, arm, hppa, i386, ia64, mipsel, powerpc, s390, sparc], 0.3.1-4+b1 [armel, kfreebsd-amd64, kfreebsd-i386, mips], 0.3.1-4 [m68k])
- simulation of 3D optical systems using FDTD on LAM-MPI clusters
- therion (0.5.1+nmu1 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.3.10-3 [hurd-i386, m68k])
- Cave surveying - 2D and 3D drawing software
- therion-doc (0.5.1+nmu1)
- Documentation for Therion Cave surveying software
- therion-viewer (0.5.1+nmu1)
- Cave surveying - 3D viewer for therion models
- tigr-glimmer (3.02-1)
- Gene detection in archea and bacteria
- tochnog (20010124-3.2)
- A free implicit/explicit finite element analysis program
- transcalc (0.14-2)
- microwave and RF transmission line calculator
- tree-ppuzzle (5.2-3 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 5.2-2 [m68k])
- Parallelized reconstruction of phylogenetic trees by maximum likelihood
- tree-puzzle (5.2-3 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 5.2-2 [m68k], 5.2-1 [hurd-i386])
- Reconstruction of phylogenetic trees by maximum likelihood
- treetool (2.0.2a-5) [non-free]
- interactive tool for displaying phylogenetic trees
- treeviewx (0.5.1-5)
- Displays and prints phylogenetic trees
- units-filter (2.8)
- Parser for expressions concerning physical values
- viewmol (2.4.1-13 [alpha, amd64, arm, armel, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 2.4.1-11+b1 [m68k])
- A graphical front end for computational chemistry programs.
- weka (3.5.7+tut1-1) [contrib]
- Machine learning algorithms for data mining tasks
- wise (2.4.1-4)
- comparison of biopolymers, commonly DNA and protein sequences
- worldwind (0.4.1-4) [non-free]
- 3D Virtual Globe
- xbs (0-7.3)
- 3-d models and movies of molecules
- xdrawchem (1.9.9-4+b1 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.9.9-4 [m68k])
- Chemical structures and reactions editor
- xmakemol (5.16-1)
- A program for visualizing atomic and molecular systems
- xmakemol-gl (5.16-1)
- A program for visualizing atomic and molecular systems
- xmds (1.6.5-2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 1.6.3-3 [m68k])
- eXtensible Multi-Dimensional Simulator
- xorsa (0.7.0-12 [alpha, amd64, arm, hppa, hurd-i386, i386, ia64, kfreebsd-amd64, kfreebsd-i386, mips, mipsel, powerpc, s390, sparc], 0.7.0-11+b1 [m68k])
- tool for Celestial Mechanics investigations
- xplot (1.19-7.2 [alpha, amd64, arm, armel, hppa, i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k, mips, mipsel, powerpc, s390, sparc], 1.19-7 [hurd-i386])
- A simple x-y column data plotter for X.
- xtide (2.9.5-3)
- provides tide and current predictions
- xtide-coastline (20020202-1)
- coastline data for xtide
- xtide-data (20070318-3)
- Harmonics data for xtide
- xtide-data-nonfree (20070318-2) [non-free]
- Harmonics data for xtide (Canada, Netherlands, Germany and UK)
- yale (1.0-14) [non-free]
- stellar data set from the Yale Bright Star Catalog
- ygraph (0.15-3.1)
- Visualize one-dimensional scientific data
- zimpl (2.07.ds1-2 [alpha, amd64, arm, armel, hppa, hurd-i386, i386, ia64, m68k, mips, mipsel, powerpc, s390, sparc], 2.05.ds2-1 [kfreebsd-amd64, kfreebsd-i386])
- mathematical modeling language for optimization problems
