Paket: bali-phy (3.6.1+dfsg-2 ve diğerleri)

[ Kaynak: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

bali-phy ile İlgili Diğer Paketler

• dep: libboost-chrono1.71.0 [x32]

  Paket mevcut değil

• dep: libboost-chrono1.74.0 (>= 1.74.0) [ia64]

  C++ representation of time duration, time point, and clocks

• dep: libboost-chrono1.83.0t64 (>= 1.83.0) [ia64, x32 değil]

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.71.0 [x32]

  Paket mevcut değil

• dep: libboost-filesystem1.74.0 (>= 1.74.0) [ia64]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-filesystem1.83.0 (>= 1.83.0) [ia64, x32 değil]

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-program-options1.71.0 [x32]

  Paket mevcut değil

• dep: libboost-program-options1.74.0 (>= 1.74.0) [ia64]

  program options library for C++

• dep: libboost-program-options1.83.0 (>= 1.83.0) [ia64, x32 değil]

  program options library for C++

• dep: libboost-random1.71.0 [x32]

  Paket mevcut değil

• dep: libboost-random1.74.0 (>= 1.74.0) [ia64]

  Boost Random Number Library

• dep: libboost-random1.83.0 (>= 1.83.0) [ia64, x32 değil]

  Boost Random Number Library

• dep: libc6 (>= 2.29) [x32]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.34) [alpha, ia64, x32 değil]

• dep: libc6.1 (>= 2.31) [ia64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.34) [alpha]

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libgcc-s1 (>= 3.0) [ppc64el, s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, amd64, ppc64, sparc64, x32]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, ia64]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 13.1) [alpha, ia64, x32 değil]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14-20240221-2.1) [alpha]

  dep: libstdc++6 (>= 9) [ia64, x32]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: gnuplot

  Command-line driven interactive plotting program.
  ayrıca şunun tarafından sağlanan bir sanal paket gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

  GNU R statistical computation and graphics system

• sug: figtree

  graphical phylogenetic tree viewer

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

bali-phy indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	3.6.1+dfsg-2+b1	6.091,7 kB	39.083,0 kB	[dosya listesi]
amd64	3.6.1+dfsg-2+b1	6.382,7 kB	37.532,0 kB	[dosya listesi]
arm64	3.6.1+dfsg-2+b1	5.733,5 kB	35.384,0 kB	[dosya listesi]
armel	3.6.1+dfsg-2+b1	4.895,0 kB	31.410,0 kB	[dosya listesi]
armhf	3.6.1+dfsg-2+b1	4.485,1 kB	23.018,0 kB	[dosya listesi]
hppa (resmi olmayan port)	3.6.1+dfsg-2	6.090,5 kB	36.336,0 kB	[dosya listesi]
i386	3.6.1+dfsg-2+b1	6.163,5 kB	36.222,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	3.6.1+dfsg-1	9.006,8 kB	69.870,0 kB	[dosya listesi]
m68k (resmi olmayan port)	3.6.1+dfsg-2+b1	5.523,4 kB	34.831,0 kB	[dosya listesi]
mips64el	3.6.1+dfsg-2+b1	5.714,9 kB	43.529,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	3.6.1+dfsg-2+b1	5.936,4 kB	42.892,0 kB	[dosya listesi]
ppc64el	3.6.1+dfsg-2+b1	6.244,1 kB	41.282,0 kB	[dosya listesi]
riscv64	3.6.1+dfsg-2+b3	6.366,5 kB	30.588,0 kB	[dosya listesi]
s390x	3.6.1+dfsg-2+b1	5.010,0 kB	35.052,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	3.6.1+dfsg-2+b1	5.065,6 kB	63.553,0 kB	[dosya listesi]
x32 (resmi olmayan port)	3.5.0.1+dfsg-1	5.788,7 kB	33.442,0 kB	[dosya listesi]