Paket: bali-phy (3.6.0+dfsg-1)

[ Kaynak: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

bali-phy ile İlgili Diğer Paketler

• dep: libboost-chrono1.74.0 (>= 1.74.0)

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.74.0 (>= 1.74.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  program options library for C++

• dep: libboost-random1.74.0 (>= 1.74.0)

  Boost Random Number Library

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libgcc-s1 (>= 3.0) [s390x]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [amd64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel, ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: gnuplot

  Command-line driven interactive plotting program.
  ayrıca şunun tarafından sağlanan bir sanal paket gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

  GNU R statistical computation and graphics system

• sug: figtree

  graphical phylogenetic tree viewer

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

bali-phy indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	6.034,2 kB	35.682,0 kB	[dosya listesi]
arm64	5.431,3 kB	32.438,0 kB	[dosya listesi]
armel	4.564,5 kB	29.752,0 kB	[dosya listesi]
armhf	4.260,7 kB	22.024,0 kB	[dosya listesi]
i386	5.831,4 kB	35.044,0 kB	[dosya listesi]
mips64el	5.573,4 kB	42.247,0 kB	[dosya listesi]
mipsel	5.537,4 kB	40.464,0 kB	[dosya listesi]
ppc64el	6.131,2 kB	40.892,0 kB	[dosya listesi]
s390x	4.991,8 kB	35.522,0 kB	[dosya listesi]