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Pakket: bedtools (2.27.1+dfsg-4 en anderen)

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suite of utilities for comparing genomic features

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by streaming several BEDTools together.

The groupBy utility is distributed in the filo package.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Scope: Suite, Purpose: use::analysing, use::comparing, Data Conversion, use::filtering, works-with::biological-sequence

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bedtools downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Versie Pakketgrootte Geïnstalleerde grootte Bestanden
alpha (unofficial port) 2.27.1+dfsg-3 554,2 kB2.274,0 kB [overzicht]
amd64 2.27.1+dfsg-4 579,5 kB1.955,0 kB [overzicht]
arm64 2.27.1+dfsg-4 515,0 kB1.803,0 kB [overzicht]
armel 2.27.1+dfsg-4 468,1 kB1.634,0 kB [overzicht]
armhf 2.27.1+dfsg-4 497,1 kB1.190,0 kB [overzicht]
hppa (unofficial port) 2.26.0+dfsg-3 624,5 kB2.371,0 kB [overzicht]
i386 2.27.1+dfsg-4 634,7 kB2.186,0 kB [overzicht]
m68k (unofficial port) 2.27.1+dfsg-3 562,0 kB1.886,0 kB [overzicht]
mips64el 2.27.1+dfsg-4 513,7 kB2.518,0 kB [overzicht]
mipsel 2.27.1+dfsg-4 522,3 kB2.394,0 kB [overzicht]
powerpcspe (unofficial port) 2.27.1+dfsg-3 529,0 kB1.959,0 kB [overzicht]
ppc64 (unofficial port) 2.26.0+dfsg-5 563,4 kB2.404,0 kB [overzicht]
ppc64el 2.27.1+dfsg-4 584,6 kB2.407,0 kB [overzicht]
riscv64 (unofficial port) 2.27.1+dfsg-3 571,7 kB1.597,0 kB [overzicht]
sh4 (unofficial port) 2.27.1+dfsg-3 678,7 kB1.739,0 kB [overzicht]
sparc64 (unofficial port) 2.26.0+dfsg-5 460,9 kB1.898,0 kB [overzicht]
x32 (unofficial port) 2.26.0+dfsg-5 555,3 kB1.727,0 kB [overzicht]