Paket: python3-pairtools (0.3.0-3.2 ve diğerleri) [debports]

[ Kaynak:  ]

Framework to process sequencing data from a Hi-C experiment

Simple and fast command-line framework to process sequencing data from a Hi-C experiment.

Process pair-end sequence alignments and perform the following operations:

  - Detect ligation junctions (a.k.a. Hi-C pairs) in aligned paired-end
    sequences of Hi-C DNA molecules
  - Sort .pairs files for downstream analyses
  - Detect, tag and remove PCR/optical duplicates
  - Generate extensive statistics of Hi-C datasets
  - Select Hi-C pairs given flexibly defined criteria
  - Restore .sam alignments from Hi-C pairs

python3-pairtools ile İlgili Diğer Paketler

• dep: cython3

  C-Extensions for Python 3

• dep: libc6 (>= 2.3.4)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.12)

  dep: python3 (>= 3.10~)

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-nose

  Paket mevcut değil

• dep: python3-numpy (>= 1:1.20.0)

  Python library for numerical computations (Python 3)

• dep: python3-numpy-abi9

  sanal paketi sağlayan python3-numpy

python3-pairtools indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
hppa (resmi olmayan port)	0.3.0-3.2+b2	144,6 kB	640,0 kB	[dosya listesi]