Pakket: mapdamage (2.2.3+dfsg-2)

[ Bron: mapdamage  ]

tracking and quantifying damage patterns in ancient DNA sequences

MapDamage is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

MapDamage is developed at the Centre for GeoGenetics by the Orlando Group.

Andere aan mapdamage gerelateerde pakketten

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libopenblas-dev

  Optimized BLAS (linear algebra) library (dev, meta)

  of libblas-dev

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  of libatlas-base-dev

  Pakket niet beschikbaar

  of libblas.so

  virtueel pakket geboden door libblas-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev

• dep: libopenblas-dev

  Optimized BLAS (linear algebra) library (dev, meta)

  of liblapack-dev

  Library of linear algebra routines 3 - static version

  of libatlas-base-dev

  Pakket niet beschikbaar

  of liblapack.so

  virtueel pakket geboden door liblapack-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.15)

  dep: python3 (>= 3.13~)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-gam

  Generalized Additive Models for R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-inline

  GNU R package to inline C, C++, Fortran functions from R

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppgsl

  GNU R package for integration with the GNU GSL

• dep: seqtk

  Fast and lightweight tool for processing sequences in the FASTA or FASTQ format

• dep: zlib1g (>= 1:1.2.3.3)

  compressiebibliotheek - programma's

mapdamage downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	49,0 kB	242,0 kB	[overzicht]
arm64	48,7 kB	346,0 kB	[overzicht]
armhf	48,5 kB	344,0 kB	[overzicht]
i386	48,9 kB	240,0 kB	[overzicht]
ppc64el	49,4 kB	346,0 kB	[overzicht]
riscv64	48,7 kB	234,0 kB	[overzicht]