Paketti: mapdamage (2.2.3+dfsg-2)

[ Source: mapdamage  ]

tracking and quantifying damage patterns in ancient DNA sequences

MapDamage is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

MapDamage is developed at the Centre for GeoGenetics by the Orlando Group.

Muut pakettiin mapdamage liittyvät paketit

• dep: libc6 (>= 2.14) [amd64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libopenblas-dev

  Optimized BLAS (linear algebra) library (dev, meta)

  tai libblas-dev

  Basic Linear Algebra Subroutines 3, static library

  tai libatlas-base-dev

  Paketti ei saatavilla

  tai libblas.so

  näennäispaketti, jonka toteuttaa libblas-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev

• dep: libopenblas-dev

  Optimized BLAS (linear algebra) library (dev, meta)

  tai liblapack-dev

  Library of linear algebra routines 3 - static version

  tai libatlas-base-dev

  Paketti ei saatavilla

  tai liblapack.so

  näennäispaketti, jonka toteuttaa liblapack-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.15)

  dep: python3 (>= 3.13~)

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-gam

  Generalized Additive Models for R

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-inline

  GNU R package to inline C, C++, Fortran functions from R

• dep: r-cran-rcpp

  GNU R package for Seamless R and C++ Integration

• dep: r-cran-rcppgsl

  GNU R package for integration with the GNU GSL

• dep: seqtk

  Fast and lightweight tool for processing sequences in the FASTA or FASTQ format

• dep: zlib1g (>= 1:1.2.3.3)

  pakkauskirjaston ajonaikaistiedostot

Imuroi mapdamage

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	49.0 kt	242.0 kt	[tiedostoluettelo]
arm64	48.7 kt	346.0 kt	[tiedostoluettelo]
armhf	48.5 kt	344.0 kt	[tiedostoluettelo]
i386	48.9 kt	240.0 kt	[tiedostoluettelo]
ppc64el	49.4 kt	346.0 kt	[tiedostoluettelo]
riscv64	48.7 kt	234.0 kt	[tiedostoluettelo]