Package: phybin (0.3-7 and others)

[ Source: phybin  ]

binning/clustering newick trees by topology

PhyBin is a simple command line tool that classifies a set of Newick tree files by their topology. The purpose of it is to take a large set of tree files and browse through the most common tree topologies.

It can do simple binning of identical trees or more complex clustering based on an all-to-all Robinson-Foulds distance matrix.

phybin produces output files that characterize the size and contents of each bin or cluster (including generating GraphViz-based visual representations of the tree topologies).

Other Packages Related to phybin

• dep: libatomic1 (>= 4.8) [m68k]

  support library providing __atomic built-in functions

• dep: libc6 (>= 2.29) [x32]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.34) [m68k]

  dep: libc6 (>= 2.38) [not alpha, ia64, loong64, m68k, x32]

  dep: libc6 (>= 2.42) [loong64]

• dep: libc6.1 (>= 2.36) [ia64]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libffi8 (>= 3.4)

  Foreign Function Interface library runtime

• dep: libgmp10 (>= 2:6.2.1+dfsg1) [ia64, m68k]

  Multiprecision arithmetic library

  dep: libgmp10 (>= 2:6.3.0+dfsg) [not ia64, m68k, x32]

• dep: libnuma1 (>= 2.0.11) [not ia64, m68k, x32]

  Libraries for controlling NUMA policy

Download phybin

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.3-7	6,343.4 kB	62,547.0 kB	[list of files]
amd64	0.3-7	3,578.3 kB	26,553.0 kB	[list of files]
arm64	0.3-7	3,567.3 kB	29,774.0 kB	[list of files]
armhf	0.3-7	5,186.6 kB	33,521.0 kB	[list of files]
hppa (unofficial port)	0.3-7	5,644.2 kB	59,856.0 kB	[list of files]
i386	0.3-7	5,314.7 kB	42,376.0 kB	[list of files]
ia64 (unofficial port)	0.3-6	6,913.7 kB	182,517.0 kB	[list of files]
loong64	0.3-7	5,771.0 kB	53,712.0 kB	[list of files]
m68k (unofficial port)	0.3-6	3,207.8 kB	33,307.0 kB	[list of files]
ppc64 (unofficial port)	0.3-7	3,439.6 kB	48,798.0 kB	[list of files]
ppc64el	0.3-7	3,464.4 kB	40,666.0 kB	[list of files]
riscv64	0.3-7	4,687.3 kB	32,590.0 kB	[list of files]
s390x	0.3-7	7,118.5 kB	55,881.0 kB	[list of files]
sparc64 (unofficial port)	0.3-7	4,888.5 kB	78,127.0 kB	[list of files]
x32 (unofficial port)	0.3-5+b1	9,291.3 kB	38,282.0 kB	[list of files]