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[ Source: garlic  ]

Package: garlic (1.6-1)

A visualization program for biomolecules

Garlic is written for the investigation of membrane proteins. It may be used to visualize other proteins, as well as some geometric objects. This version of garlic recognizes PDB format version 2.1. Garlic may also be used to analyze protein sequences.

It only depends on the X libraries, no other libraries are needed.

Features include: 

 - The slab position and thickness are visible in a small window.
 - Atomic bonds as well as atoms are treated as independent drawable
   objects.
 - The atomic and bond colors depend on position. Five mapping modes
   are available (as for slab).
 - Capable to display stereo image.
 - Capable to display other geometric objects, like membrane.
 - Atomic information is available for atom covered by the mouse
   pointer. No click required, just move the mouse pointer over the
   structure!
 - Capable to load more than one structure.
 - Capable to draw Ramachandran plot, helical wheel, Venn diagram,
   averaged hydrophobicity and hydrophobic moment plot.
 - The command prompt is available at the bottom of the main window.
   It is able to display one error message and one command string.

Tags: Field: Biology, Chemistry, User Interface: X Window System, Role: Program, Scope: Utility, Purpose: Data Visualization, X Window System: Application

Other Packages Related to garlic

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libx11-6
    X11 client-side library
  • sug: garlic-doc
    [Chemistry] a molecular visualization program - documents
  • sug: openbabel
    Convert and manipulate chemical data files

Download garlic

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 319.9 kB1136 kB [list of files]
amd64 265.3 kB952 kB [list of files]
arm 251.9 kB892 kB [list of files]
armel 278.9 kB968 kB [list of files]
hppa 270.1 kB912 kB [list of files]
hurd-i386 233.5 kB900 kB [list of files]
i386 236.1 kB916 kB [list of files]
ia64 376.2 kB1564 kB [list of files]
kfreebsd-amd64 (unofficial port) 264.2 kB850 kB [list of files]
kfreebsd-i386 (unofficial port) 233.6 kB802 kB [list of files]
m68k 206.7 kB828 kB [list of files]
mips 285.7 kB1092 kB [list of files]
mipsel 284.9 kB1092 kB [list of files]
powerpc 264.0 kB932 kB [list of files]
s390 232.5 kB856 kB [list of files]
sparc 240.0 kB912 kB [list of files]