Paket: concavity (0.1+dfsg.1-5 ve diğerleri)

[ Kaynak: concavity  ]

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

concavity ile İlgili Diğer Paketler

• dep: libc6 (>= 2.29) [alpha, ia64, riscv64, sh4 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.31) [sh4]

  dep: libc6 (>= 2.34) [riscv64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.31) [ia64]

• dep: libgcc-s1 (>= 3.0) [armel, armhf, hppa, ia64, m68k, sh4 değil]

  GCC support library

  dep: libgcc-s1 (>= 3.3.4) [sh4]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• sug: conservation-code

  protein sequence conservation scoring tool

• sug: pymol

  Molecular Graphics System

concavity indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	0.1+dfsg.1-5	237,3 kB	1.051,0 kB	[dosya listesi]
amd64	0.1+dfsg.1-5	238,5 kB	973,0 kB	[dosya listesi]
arm64	0.1+dfsg.1-5	224,0 kB	941,0 kB	[dosya listesi]
armel	0.1+dfsg.1-5	224,9 kB	933,0 kB	[dosya listesi]
armhf	0.1+dfsg.1-5	222,9 kB	809,0 kB	[dosya listesi]
hppa (resmi olmayan port)	0.1+dfsg.1-5	236,6 kB	981,0 kB	[dosya listesi]
i386	0.1+dfsg.1-5	252,5 kB	1.020,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	0.1+dfsg.1-5	266,8 kB	1.406,0 kB	[dosya listesi]
m68k (resmi olmayan port)	0.1+dfsg.1-5	235,2 kB	976,0 kB	[dosya listesi]
mips64el	0.1+dfsg.1-5	252,7 kB	1.168,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	0.1+dfsg.1-5	252,3 kB	1.194,0 kB	[dosya listesi]
ppc64el	0.1+dfsg.1-5	252,8 kB	1.130,0 kB	[dosya listesi]
riscv64	0.1+dfsg.1-5+b1	242,3 kB	885,0 kB	[dosya listesi]
s390x	0.1+dfsg.1-5	224,1 kB	969,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	0.1+dfsg.1-5	273,7 kB	1.001,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	0.1+dfsg.1-5	218,0 kB	971,0 kB	[dosya listesi]
x32 (resmi olmayan port)	0.1+dfsg.1-5	238,1 kB	948,0 kB	[dosya listesi]