Package: abyss (2.3.7-3 and others)

[ Source: abyss  ]

de novo, parallel, sequence assembler for short reads

ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.

Tags: Field: Biology, Implemented in: C, User Interface: Command Line, Role: Program

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• dep: bsdextrautils [not hppa, sparc64]

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• dep: bsdmainutils [hppa, sparc64]

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• dep: libc6 (>= 2.11) [hppa]

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  dep: libc6 (>= 2.29) [sparc64]

  dep: libc6 (>= 2.32) [m68k, sh4]

  dep: libc6 (>= 2.34) [not alpha, hppa, ia64, m68k, sh4, sparc64]

• dep: libc6.1 (>= 2.33) [alpha]

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  dep: libc6.1 (>= 2.35) [ia64]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

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• dep: libgcc1 (>= 1:4.3) [sparc64]

  Package not available

• dep: libgcc4 (>= 4.1.1) [hppa]

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• dep: libgomp1 (>= 4.9)

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• dep: libopenmpi3 [sparc64]

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  dep: libopenmpi3 (>= 4.1.2~rc1) [m68k, sh4]

  dep: libopenmpi3 (>= 4.1.4) [alpha, ia64, x32]

• dep: libopenmpi3t64 (>= 4.1.6) [amd64, arm64, mips64el, ppc64, ppc64el, riscv64]

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Download abyss

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.3.5+dfsg-2	3,091.4 kB	12,135.0 kB	[list of files]
amd64	2.3.7-3+b1	3,188.0 kB	9,900.0 kB	[list of files]
arm64	2.3.7-3+b1	2,960.1 kB	10,548.0 kB	[list of files]
hppa (unofficial port)	2.1.0-1	2,719.4 kB	9,671.0 kB	[list of files]
ia64 (unofficial port)	2.3.5+dfsg-2	3,493.2 kB	17,029.0 kB	[list of files]
m68k (unofficial port)	2.3.3-2	3,040.2 kB	9,799.0 kB	[list of files]
mips64el	2.3.7-3+b1	3,074.6 kB	12,772.0 kB	[list of files]
ppc64 (unofficial port)	2.3.7-3+b1	3,101.8 kB	12,984.0 kB	[list of files]
ppc64el	2.3.7-3+b1	3,123.3 kB	12,532.0 kB	[list of files]
riscv64	2.3.7-3+b1	3,141.5 kB	8,296.0 kB	[list of files]
sh4 (unofficial port)	2.3.3-2	3,276.4 kB	9,167.0 kB	[list of files]
sparc64 (unofficial port)	2.2.2-1	2,718.5 kB	9,131.0 kB	[list of files]
x32 (unofficial port)	2.3.5+dfsg-2	3,104.9 kB	8,946.0 kB	[list of files]