Package: samtools (1.19.2-1 and others)

[ Source: samtools  ]

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

Other Packages Related to samtools

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libncurses6 (>= 6)

  shared libraries for terminal handling

• dep: libtinfo6 (>= 6)

  shared low-level terminfo library for terminal handling

• dep: zlib1g (>= 1:1.1.4) [not armel, armhf, hppa, i386, m68k, sh4]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, i386, m68k, sh4]

• sug: cwltool

  Common Workflow Language reference implementation

Download samtools

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.19.2-1+b1	626.8 kB	1,800.0 kB	[list of files]
amd64	1.19.2-1+b1	630.1 kB	1,393.0 kB	[list of files]
arm64	1.19.2-1+b1	602.6 kB	1,669.0 kB	[list of files]
armel	1.19.2-1+b1	596.5 kB	1,318.0 kB	[list of files]
armhf	1.19.2-1+b1	599.6 kB	1,134.0 kB	[list of files]
hppa (unofficial port)	1.19.2-1+b1	627.8 kB	1,355.0 kB	[list of files]
i386	1.19.2-1+b1	665.6 kB	1,518.0 kB	[list of files]
ia64 (unofficial port)	1.19.2-1+b1	716.1 kB	2,112.0 kB	[list of files]
m68k (unofficial port)	1.19.2-1+b1	607.6 kB	1,342.0 kB	[list of files]
mips64el	1.19.2-1+b1	609.1 kB	1,819.0 kB	[list of files]
ppc64 (unofficial port)	1.19.2-1+b1	647.0 kB	1,925.0 kB	[list of files]
ppc64el	1.19.2-1+b1	656.9 kB	1,925.0 kB	[list of files]
riscv64	1.19.2-1+b1	640.5 kB	1,265.0 kB	[list of files]
s390x	1.19.2-1+b1	637.7 kB	1,469.0 kB	[list of files]
sh4 (unofficial port)	1.19.2-1+b1	687.0 kB	1,600.0 kB	[list of files]
sparc64 (unofficial port)	1.19.2-1+b1	596.4 kB	7,761.0 kB	[list of files]
x32 (unofficial port)	1.19.2-1+b1	635.4 kB	1,358.0 kB	[list of files]