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Package: embassy-domsearch (0.1.0+20980715-1)

Extra EMBOSS commands to search for protein domains

The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in this DOMSEARCH release are seqfraggle (removes fragment sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove ambiguous classified sequences from DHF files) and seqwords (Generates DHF files from keyword search of UniProt).

Other Packages Related to embassy-domsearch

  • depends
  • recommends
  • suggests
  • dep: emboss-lib
    EMBOSS Libraries
  • dep: libajax6
    EMBOSS library for commands
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc6 (>= 2.0) [i386, mips, mipsel, powerpc, s390]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.2) [hppa]
    dep: libc6 (>= 2.2.5) [amd64]
    dep: libc6 (>= 2.4) [armel]
    dep: libc6 (>= 2.6) [sparc]
  • dep: libc6.1 (>= 2.0) [alpha]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
    dep: libc6.1 (>= 2.2) [ia64]
  • dep: libfontconfig1 (>= 2.4.0)
    generic font configuration library - runtime
  • dep: libfreetype6 (>= 2.2.1)
    FreeType 2 font engine, shared library files
  • dep: libgd2-xpm (>= 2.0.36~rc1~dfsg)
    GD Graphics Library version 2
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libnucleus6
    EMBOSS library for molecular sequence analysis
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libx11-6
    X11 client-side library
  • dep: libxpm4
    X11 pixmap library
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: emboss
    the european molecular biology open software suite
  • sug: embassy
    Package not available

Download embassy-domsearch

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 122.1 kB676 kB [list of files]
amd64 119.7 kB656 kB [list of files]
armel 120.8 kB644 kB [list of files]
hppa 120.4 kB648 kB [list of files]
i386 119.8 kB640 kB [list of files]
ia64 126.6 kB700 kB [list of files]
kfreebsd-amd64 121.3 kB572 kB [list of files]
kfreebsd-i386 119.7 kB552 kB [list of files]
mips 118.8 kB656 kB [list of files]
mipsel 118.3 kB656 kB [list of files]
powerpc 127.9 kB676 kB [list of files]
s390 122.3 kB652 kB [list of files]
sparc 119.4 kB648 kB [list of files]