Package: r-cran-alakazam (1.3.0-1 and others)

[ Source: r-cran-alakazam  ]

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

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• dep: libc6 (>= 2.11) [mips64el, ppc64, s390x]

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  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [hppa]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [m68k, sparc64]

• dep: libc6.1 (>= 2.11) [alpha]

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• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

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  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

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• dep: libgcc2 (>= 4.2.1) [m68k]

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• dep: libstdc++6 (>= 13.1) [not m68k, sparc64, x32]

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• dep: r-api-3.5 [m68k]

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• dep: r-cran-airr (>= 1.3) [x32]

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Download r-cran-alakazam

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.3.0-1	2,357.8 kB	2,916.0 kB	[list of files]
amd64	1.3.0-1	2,362.0 kB	2,845.0 kB	[list of files]
arm64	1.3.0-1	2,356.8 kB	2,853.0 kB	[list of files]
hppa (unofficial port)	1.3.0-1	2,360.1 kB	2,849.0 kB	[list of files]
ia64 (unofficial port)	1.3.0-1	2,368.7 kB	2,948.0 kB	[list of files]
m68k (unofficial port)	0.3.0-1	1,706.4 kB	2,053.0 kB	[list of files]
mips64el	1.3.0-1	2,356.0 kB	2,859.0 kB	[list of files]
ppc64 (unofficial port)	1.3.0-1	2,362.4 kB	2,918.0 kB	[list of files]
ppc64el	1.3.0-1	2,361.4 kB	2,917.0 kB	[list of files]
riscv64	1.3.0-1+b1	2,364.5 kB	2,821.0 kB	[list of files]
s390x	1.3.0-1	2,360.8 kB	2,845.0 kB	[list of files]
sh4 (unofficial port)	1.3.0-1	2,367.9 kB	2,851.0 kB	[list of files]
sparc64 (unofficial port)	1.0.2-1	1,855.4 kB	2,252.0 kB	[list of files]
x32 (unofficial port)	1.2.1-1	2,352.5 kB	2,830.0 kB	[list of files]