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[ Source: muscle  ]

Package: muscle (3.70+fix1-2)

Multiple alignment program of protein sequences

MUSCLE is a multiple alignment program for protein sequences. MUSCLE stands for multiple sequence comparison by log-expectation. In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there.

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Other Packages Related to muscle

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5) [avr32]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.7-1) [not alpha, avr32, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-21) [not armel, avr32, hppa, hurd-i386, kfreebsd-amd64, kfreebsd-i386, m68k]
    GCC support library
    dep: libgcc1 (>= 1:4.2.1) [avr32, hurd-i386]
    dep: libgcc1 (>= 1:4.3) [armel]
    dep: libgcc1 (>= 1:4.4) [kfreebsd-amd64, kfreebsd-i386]
  • dep: libgcc2 (>= 4.2.1-1) [m68k]
    Package not available
  • dep: libgcc4 (>= 4.1.1-21) [hppa]
    GCC support library
  • dep: libstdc++6 (>= 4.1.1-21) [not armel, avr32, hurd-i386, kfreebsd-amd64, kfreebsd-i386]
    The GNU Standard C++ Library v3
    dep: libstdc++6 (>= 4.2.1) [avr32, hurd-i386]
    dep: libstdc++6 (>= 4.3) [armel]
    dep: libstdc++6 (>= 4.4) [kfreebsd-amd64, kfreebsd-i386]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    A library to determine the call-chain of a program - runtime

Download muscle

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 193.7 kB612 kB [list of files]
amd64 162.7 kB500 kB [list of files]
armel 154.4 kB468 kB [list of files]
avr32 (unofficial port) 162.0 kB428 kB [list of files]
hppa 185.0 kB524 kB [list of files]
hurd-i386 156.6 kB488 kB [list of files]
i386 152.4 kB472 kB [list of files]
ia64 242.3 kB812 kB [list of files]
kfreebsd-amd64 161.6 kB478 kB [list of files]
kfreebsd-i386 151.4 kB446 kB [list of files]
m68k (unofficial port) 150.1 kB468 kB [list of files]
mips 191.1 kB660 kB [list of files]
mipsel 190.7 kB660 kB [list of files]
powerpc 176.4 kB528 kB [list of files]
s390 165.0 kB500 kB [list of files]
sparc 158.3 kB500 kB [list of files]