套件：muscle（1:5.1.0-1 以及其他的）

[ 原始碼： muscle  ]

Multiple alignment program of protein sequences

MUSCLE is a multiple alignment program for protein sequences. MUSCLE stands for multiple sequence comparison by log-expectation. In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there.

Muscle v5 is a major re-write of MUSCLE based on new algorithms.

Users should be aware that command line arguments compared to version 3.x of MUSCLE have changed!

Highest accuracy, scalable to thousands of sequences

Compared to previous versions, Muscle v5 is much more accurate, is often faster, and scales to much larger datasets. At the time of writing (late 2021), Muscle v5 has the highest scores on multiple alignment benchmarks including Balibase, Bralibase, Prefab and Balifam. It can align tens of thousands of sequences with high accuracy on a low-cost commodity computer (say, an 8-core Intel CPU with 32 Gb RAM). On large datasets, Muscle v5 is 20-30% more accurate than MAFFT and Clustal-Omega.

Alignment ensembles

Muscle v5 can generate ensembles of high-accuracy alternative alignments. All replicates have equal average accuracy on benchmark test, including the MSA made with default parameters. By comparing results of downstream analysis (trees, structure prediction...) on different replicates, you can assess the effects of alignment errors on your study.

標籤: 生物學: Clustal/ALN, 蛋白質, 領域: field::biology, field::biology:bioinformatics, 實做語言: implemented-in::c++, interface::commandline, 角色: 程式, 範圍: 實用程式, Purpose: use::comparing, works-with-format::plaintext, 處理: 需要一個額外的標籤

其他與 muscle 有關的套件

• dep: libc6 (>= 2.34)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, riscv64]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11) [除 riscv64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [riscv64]

• enh: seaview

  Multiplatform interface for sequence alignment and phylogeny

• enh: t-coffee

  Multiple Sequence Alignment

下載 muscle

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	1:5.1.0-1	290。4 kB	843。0 kB	[檔案列表]
arm64	1:5.1.0-1	256。3 kB	859。0 kB	[檔案列表]
armel	1:5.1.0-1	238。0 kB	794。0 kB	[檔案列表]
armhf	1:5.1.0-1	242。3 kB	538。0 kB	[檔案列表]
i386	1:5.1.0-1	303。8 kB	922。0 kB	[檔案列表]
mips64el	1:5.1.0-1	278。3 kB	1，104。0 kB	[檔案列表]
ppc64el	1:5.1.0-1	309。8 kB	1，051。0 kB	[檔案列表]
riscv64	1:5.1.0-1+b1	305。9 kB	700。0 kB	[檔案列表]
s390x	1:5.1.0-1	260。2 kB	879。0 kB	[檔案列表]