Paket: proteinortho (6.3.1+dfsg-1 ve diğerleri)

[ Kaynak: proteinortho  ]

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

proteinortho ile İlgili Diğer Paketler

• dep: diamond-aligner [alpha, hppa, m68k, sh4, sparc64]

  accelerated BLAST compatible local sequence aligner

  dep: diamond-aligner (>= 2.0.10~) [alpha, hppa, m68k, sh4, sparc64 değil]

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  ya da libblas.so.3

  sanal paketi sağlayan libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.32) [m68k, sh4]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.34) [alpha, hppa, ia64, m68k, sh4, sparc64 değil]

  dep: libc6 (>= 2.7) [hppa, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.7) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgcc1 (>= 1:3.4) [sparc64]

  Paket mevcut değil

• dep: libgomp1 (>= 4.9) [alpha, hppa, m68k, sh4, sparc64 değil]

  GCC OpenMP (GOMP) support library

  dep: libgomp1 (>= 6) [alpha, hppa, m68k, sh4, sparc64]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

• dep: libstdc++6 (>= 11) [hppa, m68k, sh4]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [alpha, hppa, m68k, sh4, sparc64 değil]

  dep: libstdc++6 (>= 5.2) [alpha, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: perl [sparc64 değil]

  Larry Wall's Practical Extraction and Report Language

• dep: procps [sparc64 değil]

  /proc file system utilities

• dep: python3

  interactive high-level object-oriented language (default python3 version)

proteinortho indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	6.0.31+dfsg-1	210,9 kB	832,0 kB	[dosya listesi]
amd64	6.3.1+dfsg-1	341,5 kB	1.177,0 kB	[dosya listesi]
arm64	6.3.1+dfsg-1	312,1 kB	1.181,0 kB	[dosya listesi]
hppa (resmi olmayan port)	6.0.31+dfsg-2	207,9 kB	780,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	6.3.1+dfsg-1	397,3 kB	1.577,0 kB	[dosya listesi]
m68k (resmi olmayan port)	6.0.31+dfsg-2	207,1 kB	771,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	6.3.1+dfsg-1	337,2 kB	1.245,0 kB	[dosya listesi]
ppc64el	6.3.1+dfsg-1	334,7 kB	1.245,0 kB	[dosya listesi]
riscv64	6.3.1+dfsg-1	341,6 kB	1.033,0 kB	[dosya listesi]
s390x	6.3.1+dfsg-1	310,6 kB	1.125,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	6.0.31+dfsg-2	221,7 kB	764,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	6.0.8+dfsg-1	187,0 kB	834,0 kB	[dosya listesi]
x32 (resmi olmayan port)	6.3.1+dfsg-1	346,8 kB	1.162,0 kB	[dosya listesi]