Package: srst2 (0.2.0-11 and others)

[ Source: srst2  ]

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Other Packages Related to srst2

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: python [hppa, x32]

  Package not available

• dep: python-biopython [hppa, x32]

  Python library for bioinformatics (implemented in Python 2)

• dep: python-scipy [hppa, x32]

  Package not available

• dep: python3 [not hppa, x32]

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython [not hppa, x32]

  Python3 library for bioinformatics

• dep: python3-scipy [not hppa, x32]

  scientific tools for Python 3

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• rec: python3-rpy2

  Python3 interface to the GNU R language and environment (version 2)

Download srst2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	0.2.0-11	59.6 kB	254.0 kB	[list of files]
amd64	0.2.0-11	59.6 kB	254.0 kB	[list of files]
arm64	0.2.0-11	59.6 kB	254.0 kB	[list of files]
hppa (unofficial port)	0.1.8-1	58.6 kB	258.0 kB	[list of files]
ia64 (unofficial port)	0.2.0-11	59.6 kB	254.0 kB	[list of files]
m68k (unofficial port)	0.2.0-11	59.6 kB	254.0 kB	[list of files]
mips64el	0.2.0-11	59.6 kB	254.0 kB	[list of files]
ppc64 (unofficial port)	0.2.0-11	59.6 kB	254.0 kB	[list of files]
ppc64el	0.2.0-11	59.6 kB	254.0 kB	[list of files]
riscv64	0.2.0-11	59.6 kB	254.0 kB	[list of files]
sh4 (unofficial port)	0.2.0-11	59.6 kB	254.0 kB	[list of files]
sparc64 (unofficial port)	0.2.0-11	59.6 kB	254.0 kB	[list of files]
x32 (unofficial port)	0.1.8-1	58.6 kB	258.0 kB	[list of files]