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[ Source: cd-hit  ]

Package: cd-hit (4.8.1-4)

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suite of programs designed to quickly group sequences

cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, implemented-in::perl, User Interface: Command Line, Role: role::program, use::comparing, Works with: Biological Sequence

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Download cd-hit

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 505.8 kB1,531.0 kB [list of files]
amd64 510.3 kB1,411.0 kB [list of files]
arm64 493.8 kB1,309.0 kB [list of files]
armel 491.0 kB1,319.0 kB [list of files]
armhf 487.6 kB1,111.0 kB [list of files]
hppa (unofficial port) 506.3 kB1,398.0 kB [list of files]
i386 511.4 kB1,477.0 kB [list of files]
ia64 (unofficial port) 525.4 kB2,178.0 kB [list of files]
m68k (unofficial port) 506.1 kB1,423.0 kB [list of files]
mips64el 510.9 kB1,588.0 kB [list of files]
mipsel 511.2 kB1,541.0 kB [list of files]
ppc64 (unofficial port) 509.0 kB1,813.0 kB [list of files]
ppc64el 508.7 kB1,813.0 kB [list of files]
riscv64 (unofficial port) 502.3 kB1,219.0 kB [list of files]
s390x 496.6 kB1,429.0 kB [list of files]
sh4 (unofficial port) 510.8 kB1,373.0 kB [list of files]
sparc64 (unofficial port) 489.5 kB1,399.0 kB [list of files]
x32 (unofficial port) 506.8 kB1,381.0 kB [list of files]