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[ Source: samtools  ]

Package: samtools (1.11-1)

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processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Networking: Client, Network Protocol: FTP, protocol::http, role::program, Scope: Utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, use::calculating, Filtering, Works with: Biological Sequence

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Download samtools

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 549.7 kB1,320.0 kB [list of files]
amd64 531.8 kB1,201.0 kB [list of files]
arm64 513.2 kB1,149.0 kB [list of files]
armel 503.0 kB1,134.0 kB [list of files]
armhf 507.0 kB978.0 kB [list of files]
hppa (unofficial port) 539.8 kB1,184.0 kB [list of files]
i386 562.3 kB1,306.0 kB [list of files]
m68k (unofficial port) 516.3 kB1,158.0 kB [list of files]
mips64el 518.2 kB1,281.0 kB [list of files]
mipsel 525.7 kB1,240.0 kB [list of files]
ppc64 (unofficial port) 553.2 kB1,733.0 kB [list of files]
ppc64el 559.1 kB1,669.0 kB [list of files]
riscv64 (unofficial port) 521.0 kB1,031.0 kB [list of files]
s390x 512.5 kB1,229.0 kB [list of files]
sh4 (unofficial port) 585.4 kB1,099.0 kB [list of files]
sparc64 (unofficial port) 504.1 kB1,192.0 kB [list of files]
x32 (unofficial port) 534.8 kB1,174.0 kB [list of files]