Pacote: edlib-aligner (1.2.4-1)

[ Fonte: libedlib  ]

edlib sequence alignment tool using edit distance

Edlib is a lightweight and super fast C/C++ library for sequence alignment using edit distance. This package provides an aligner using this library.

Features of libedlib

 * Calculates edit distance (Levehnstein distance).
 * It can find optimal alignment path (instructions how to transform
   first sequence into the second sequence).
 * It can find just the start and/or end locations of alignment path -
   can be useful when speed is more important than having exact
   alignment path.
 * Supports multiple alignment methods: global(NW), prefix(SHW) and
   infix(HW), each of them useful for different scenarios.
 * You can extend character equality definition, enabling you to e.g.
   have wildcard characters, to have case insensitive alignment or to
   work with degenerate nucleotides.
 * It can easily handle small or very large sequences, even when finding
   alignment path, while consuming very little memory.
 * Super fast thanks to Myers's bit-vector algorithm.

Outros pacotes relacionados a edlib-aligner

• dep: libc6 (>= 2.14) [amd64]

  GNU Biblioteca C: Bibliotecas compartilhadas
  também um pacote virtual fornecido por libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

  dep: libc6 (>= 2.4) [armhf, i386]

• dep: libedlib0 (= 1.2.4-1)

  library for sequence alignment using edit distance

• dep: libgcc1 (>= 1:3.0) [não armhf]

  Biblioteca de suporte GCC

  dep: libgcc1 (>= 1:3.5) [armhf]

• dep: libstdc++6 (>= 5.2)

  Biblioteca C++ padrão da GNU v3

Download de edlib-aligner

Baixe para todas as arquiteturas disponíveis

Arquitetura	Tamanho do pacote	Tamanho instalado	Arquivos
amd64	22.6 kB	65.0 kB	[lista de arquivos]
arm64	21.4 kB	61.0 kB	[lista de arquivos]
armhf	19.5 kB	48.0 kB	[lista de arquivos]
i386	22.9 kB	68.0 kB	[lista de arquivos]