Pakket: prime-phylo (1.0.11-9 en anderen)

[ Bron: prime-phylo  ]

bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Andere aan prime-phylo gerelateerde pakketten

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-mpi1.74.0 (>= 1.74.0)

  C++ interface to the Message Passing Interface (MPI)

• dep: libboost-serialization1.74.0 (>= 1.74.0)

  serialization library for C++

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, i386, mipsel, s390x]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  of liblapack.so.3

  virtueel pakket geboden door libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libopenmpi3 (>= 4.0.5)

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: libxml2 (>= 2.7.4)

  GNOME XML library

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: mrbayes

  Bayesian Inference of Phylogeny

• sug: muscle

  Multiple alignment program of protein sequences

• sug: njplot

  phylogenetic tree drawing program

• sug: phyml

  Phylogenetic estimation using Maximum Likelihood

• sug: probalign

  multiple sequence alignment using partition function posterior probabilities

• sug: python3-biopython

  Python3 library for bioinformatics

• sug: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• sug: treeviewx

  Displays and prints phylogenetic trees

prime-phylo downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.0.11-9+b1	802,3 kB	3.138,0 kB	[overzicht]
arm64	1.0.11-9+b1	719,1 kB	2.938,0 kB	[overzicht]
armel	1.0.11-9+b1	676,5 kB	2.527,0 kB	[overzicht]
armhf	1.0.11-9+b1	689,1 kB	2.007,0 kB	[overzicht]
i386	1.0.11-9+b1	867,4 kB	3.131,0 kB	[overzicht]
mips64el	1.0.11-9+b1	685,2 kB	3.519,0 kB	[overzicht]
mipsel	1.0.11-9+b1	689,8 kB	3.245,0 kB	[overzicht]
ppc64el	1.0.11-9+b1	810,2 kB	3.882,0 kB	[overzicht]
s390x	1.0.11-9+b1	717,4 kB	3.170,0 kB	[overzicht]