Paketti: prime-phylo (1.0.11-9 ja muut)

[ Source: prime-phylo  ]

bayesian estimation of gene trees taking the species tree into account

PrIME (Probabilistic Integrated Models of Evolution) is a package supporting inference of evolutionary parameters in a Bayesian framework using Markov chain Monte Carlo simulation. A distinguishing feature of PrIME is that the species tree is taken into account when analyzing gene trees.

The input data to PrIME is a multiple sequence alignment in FASTA format and the output data contains trees in Newick format.

Muut pakettiin prime-phylo liittyvät paketit

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  tai libblas.so.3

  näennäispaketti, jonka toteuttaa libatlas3-base, libblas3, libblis3-openmp, libblis3-pthread, libblis3-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-mpi1.74.0 (>= 1.74.0)

  C++ interface to the Message Passing Interface (MPI)

• dep: libboost-serialization1.74.0 (>= 1.74.0)

  serialization library for C++

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0) [amd64, i386, mipsel, s390x]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

  tai liblapack.so.3

  näennäispaketti, jonka toteuttaa libatlas3-base, liblapack3, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libopenmpi3 (>= 4.0.5)

  high performance message passing library -- shared library

• dep: libstdc++6 (>= 9)

  GNU standardi C++ -kirjasto, versio 3

• dep: libxml2 (>= 2.7.4)

  XML-kirjasto Gnomelle

• dep: perl

  Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: mrbayes

  Bayesian Inference of Phylogeny

• sug: muscle

  Multiple alignment program of protein sequences

• sug: njplot

  phylogenetic tree drawing program

• sug: phyml

  Phylogenetic estimation using Maximum Likelihood

• sug: probalign

  multiple sequence alignment using partition function posterior probabilities

• sug: python3-biopython

  Python3 library for bioinformatics

• sug: raxml

  Randomized Axelerated Maximum Likelihood of phylogenetic trees

• sug: treeviewx

  Displays and prints phylogenetic trees

Imuroi prime-phylo

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	1.0.11-9+b1	802.3 kt	3,138.0 kt	[tiedostoluettelo]
arm64	1.0.11-9+b1	719.1 kt	2,938.0 kt	[tiedostoluettelo]
armel	1.0.11-9+b1	676.5 kt	2,527.0 kt	[tiedostoluettelo]
armhf	1.0.11-9+b1	689.1 kt	2,007.0 kt	[tiedostoluettelo]
i386	1.0.11-9+b1	867.4 kt	3,131.0 kt	[tiedostoluettelo]
mips64el	1.0.11-9+b1	685.2 kt	3,519.0 kt	[tiedostoluettelo]
mipsel	1.0.11-9+b1	689.8 kt	3,245.0 kt	[tiedostoluettelo]
ppc64el	1.0.11-9+b1	810.2 kt	3,882.0 kt	[tiedostoluettelo]
s390x	1.0.11-9+b1	717.4 kt	3,170.0 kt	[tiedostoluettelo]