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[ Source: spaln  ]

Package: spaln (2.4.1+dfsg-3)

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splicing-aware transcript-alignment to genomic DNA

Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.

spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 345.1 kB855.0 kB [list of files]
arm64 311.5 kB775.0 kB [list of files]
armel 296.6 kB781.0 kB [list of files]
armhf 303.3 kB589.0 kB [list of files]
i386 349.5 kB881.0 kB [list of files]
mips64el 330.2 kB955.0 kB [list of files]
mipsel 323.5 kB895.0 kB [list of files]
ppc64el 360.1 kB1,120.0 kB [list of files]
s390x 349.1 kB1,003.0 kB [list of files]