Paket: nanopolish (0.14.0-1 ve diğerleri)

[ Kaynak: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

nanopolish ile İlgili Diğer Paketler

• dep: libc6 (>= 2.23) [sparc64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.29) [ppc64]

  dep: libc6 (>= 2.34) [alpha, ia64, ppc64, sh4, sparc64 değil]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, i386, mips64el, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgcc1 (>= 1:3.4) [sparc64]

  Paket mevcut değil

• dep: libgomp1 (>= 4.9) [sparc64]

  GCC OpenMP (GOMP) support library

  dep: libgomp1 (>= 6) [sparc64 değil]

• dep: libhdf5-100 [sparc64]

  Paket mevcut değil

• dep: libhdf5-103-1 [ppc64]

  HDF5 C runtime files - serial version

• dep: libhdf5-103-1t64 [ppc64, sparc64 değil]

  HDF5 C runtime files - serial version

• dep: libhts2 [sparc64]

  Paket mevcut değil

• dep: libhts3 (>= 1.10) [ppc64]

  C library for high-throughput sequencing data formats

• dep: libhts3t64 (>= 1.17) [ppc64, sparc64 değil]

  C library for high-throughput sequencing data formats

• dep: libslow5-0 (>= 0.5.1) [x32]

  library for reading & writing SLOW5 files

  dep: libslow5-0 (>= 0.5.1+dfsg) [hppa]

• dep: libslow5-0t64 (>= 0.5.1) [hppa, ppc64, sparc64, x32 değil]

  library for reading & writing SLOW5 files

• dep: libstdc++6 (>= 13.1) [ppc64, sparc64 değil]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [sparc64]

  dep: libstdc++6 (>= 9) [ppc64]

• dep: libstreamvbyte0 (>= 0.4.1) [ppc64, sparc64 değil]

  fast integer compression in C using the StreamVByte codec

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: perl [sparc64 değil]

  Larry Wall's Practical Extraction and Report Language

• dep: python3 [sparc64 değil]

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [armel, armhf değil]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

• sug: python [sparc64]

  Paket mevcut değil

nanopolish indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	0.14.0-1+b1	2.133,7 kB	9.606,0 kB	[dosya listesi]
amd64	0.14.0-1+b1	2.144,8 kB	9.343,0 kB	[dosya listesi]
arm64	0.14.0-1+b1	2.073,9 kB	9.219,0 kB	[dosya listesi]
armel	0.14.0-1+b1	2.078,6 kB	9.253,0 kB	[dosya listesi]
armhf	0.14.0-1+b1	2.085,1 kB	8.861,0 kB	[dosya listesi]
hppa (resmi olmayan port)	0.14.0-1+b1	2.149,1 kB	9.501,0 kB	[dosya listesi]
i386	0.14.0-1+b1	2.167,9 kB	9.413,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	0.14.0-1+b1	2.281,9 kB	10.820,0 kB	[dosya listesi]
m68k (resmi olmayan port)	0.14.0-1+b1	2.117,9 kB	9.409,0 kB	[dosya listesi]
mips64el	0.14.0-1+b1	2.105,4 kB	9.592,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	0.13.3-2	2.208,6 kB	9.987,0 kB	[dosya listesi]
ppc64el	0.14.0-1+b1	2.149,2 kB	9.603,0 kB	[dosya listesi]
riscv64	0.14.0-1+b2	2.150,1 kB	9.083,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	0.14.0-1+b1	2.257,1 kB	9.347,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	0.5.0-1+b1	1.799,8 kB	3.490,0 kB	[dosya listesi]
x32 (resmi olmayan port)	0.14.0-1+b1	2.144,4 kB	9.241,0 kB	[dosya listesi]