Paket: nanopolish (0.13.2-3)

[ Kaynak: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

nanopolish ile İlgili Diğer Paketler

• dep: libc6 (>= 2.29)

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [armel, armhf, mipsel, ppc64el değil]

  GCC support library

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-103-1

  HDF5 C runtime files - serial version

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [arm64 değil]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.3) [arm64]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

nanopolish indir

Tüm mevcut mimariler için indir

Mimari	Paket Boyutu	Kurulu Boyut	Dosyalar
amd64	2.199,8 kB	9.539,0 kB	[dosya listesi]
arm64	2.130,2 kB	9.334,0 kB	[dosya listesi]
armel	2.126,7 kB	9.405,0 kB	[dosya listesi]
armhf	2.141,1 kB	8.985,0 kB	[dosya listesi]
i386	2.247,0 kB	9.797,0 kB	[dosya listesi]
mips64el	2.140,4 kB	9.757,0 kB	[dosya listesi]
mipsel	2.163,9 kB	9.796,0 kB	[dosya listesi]
ppc64el	2.202,2 kB	9.795,0 kB	[dosya listesi]
s390x	2.134,3 kB	9.626,0 kB	[dosya listesi]