Pakket: fasta3 (36.3.8i.14-Nov-2020-1 en anderen)

[ Bron: fasta3  ]

tools for searching collections of biological sequences

The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.

 * Protein
   - Protein-protein FASTA
   - Protein-protein Smith-Waterman (ssearch)
   - Global Protein-protein (Needleman-Wunsch) (ggsearch)
   - Global/Local protein-protein (glsearch)
   - Protein-protein with unordered peptides (fasts)
   - Protein-protein with mixed peptide sequences (fastf)

 * Nucleotide
   - Nucleotide-Nucleotide (DNA/RNA fasta)
   - Ordered Nucleotides vs Nucleotide (fastm)
   - Un-ordered Nucleotides vs Nucleotide (fasts)

 * Translated
   - Translated DNA (with frameshifts, e.g. ESTs)
     vs Proteins (fastx/fasty)
   - Protein vs Translated DNA (with frameshifts)
     (tfastx/tfasty)
   - Peptides vs Translated DNA (tfasts)

 * Statistical Significance
   - Protein vs Protein shuffle (prss)
   - DNA vs DNA shuffle (prss)
   - Translated DNA vs Protein shuffle (prfx)

 * Local Duplications
   - Local Protein alignments (lalign)
   - Plot Protein alignment "dot-plot" (plalign)
   - Local DNA alignments (lalign)
   - Plot DNA alignment "dot-plot" (plalign)

This software is often used via a web service at the EBI with readily indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/.

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fasta3 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	36.3.8i.14-Nov-2020-1	907,4 kB	7.534,0 kB	[overzicht]
amd64	36.3.8i.14-Nov-2020-1	902,2 kB	6.970,0 kB	[overzicht]
arm64	36.3.8i.14-Nov-2020-1	805,2 kB	6.702,0 kB	[overzicht]
armel	36.3.8i.14-Nov-2020-1	807,9 kB	6.924,0 kB	[overzicht]
armhf	36.3.8i.14-Nov-2020-1	771,9 kB	5.324,0 kB	[overzicht]
hppa (unofficial port)	36.3.8i.14-Nov-2020-1	864,1 kB	6.245,0 kB	[overzicht]
i386	36.3.8i.14-Nov-2020-1	853,3 kB	6.924,0 kB	[overzicht]
ia64 (unofficial port)	36.3.8i.14-Nov-2020-1	1.075,0 kB	11.899,0 kB	[overzicht]
m68k (unofficial port)	36.3.8i.14-Nov-2020-1	755,2 kB	5.887,0 kB	[overzicht]
mips64el	36.3.8i.14-Nov-2020-1	809,3 kB	6.742,0 kB	[overzicht]
ppc64 (unofficial port)	36.3.8i.14-Nov-2020-1	872,1 kB	7.875,0 kB	[overzicht]
ppc64el	36.3.8i.14-Nov-2020-1	884,6 kB	8.238,0 kB	[overzicht]
riscv64	36.3.8i.14-Nov-2020-1+b1	1.005,6 kB	5.915,0 kB	[overzicht]
s390x	36.3.8i.14-Nov-2020-1	826,1 kB	6.836,0 kB	[overzicht]
sh4 (unofficial port)	36.3.8i.14-Nov-2020-1	929,0 kB	6.336,0 kB	[overzicht]
sparc64 (unofficial port)	36.3.8i.14-Nov-2020-1	895,1 kB	18.263,0 kB	[overzicht]
x32 (unofficial port)	36.3.8i.14-Nov-2020-1	884,2 kB	6.748,0 kB	[overzicht]