Pakket: fasta3 (36.3.8i.14-Nov-2020-2~0exp0simde en anderen)

[ Bron: fasta3  ]

Experimenteel pakket

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

tools for searching collections of biological sequences

The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.

 * Protein
   - Protein-protein FASTA
   - Protein-protein Smith-Waterman (ssearch)
   - Global Protein-protein (Needleman-Wunsch) (ggsearch)
   - Global/Local protein-protein (glsearch)
   - Protein-protein with unordered peptides (fasts)
   - Protein-protein with mixed peptide sequences (fastf)

 * Nucleotide
   - Nucleotide-Nucleotide (DNA/RNA fasta)
   - Ordered Nucleotides vs Nucleotide (fastm)
   - Un-ordered Nucleotides vs Nucleotide (fasts)

 * Translated
   - Translated DNA (with frameshifts, e.g. ESTs)
     vs Proteins (fastx/fasty)
   - Protein vs Translated DNA (with frameshifts)
     (tfastx/tfasty)
   - Peptides vs Translated DNA (tfasts)

 * Statistical Significance
   - Protein vs Protein shuffle (prss)
   - DNA vs DNA shuffle (prss)
   - Translated DNA vs Protein shuffle (prfx)

 * Local Duplications
   - Local Protein alignments (lalign)
   - Plot Protein alignment "dot-plot" (plalign)
   - Local DNA alignments (lalign)
   - Plot DNA alignment "dot-plot" (plalign)

This software is often used via a web service at the EBI with readily indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/.

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• dep: libc6 (>= 2.34) [niet alpha, ia64, sh4]

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  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.36) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.36) [ia64]

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fasta3 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	36.3.8i.14-Nov-2020-2~0exp0simde	907,5 kB	7.534,0 kB	[overzicht]
amd64	36.3.8i.14-Nov-2020-2~0exp0simde	902,0 kB	6.970,0 kB	[overzicht]
arm64	36.3.8i.14-Nov-2020-2~0exp0simde	805,3 kB	6.702,0 kB	[overzicht]
armel	36.3.8i.14-Nov-2020-2~0exp0simde	811,0 kB	6.328,0 kB	[overzicht]
armhf	36.3.8i.14-Nov-2020-2~0exp0simde	775,9 kB	4.992,0 kB	[overzicht]
hppa (unofficial port)	36.3.8i.14-Nov-2020-2~0exp0simde	864,1 kB	6.245,0 kB	[overzicht]
i386	36.3.8i.14-Nov-2020-2~0exp0simde	852,7 kB	6.924,0 kB	[overzicht]
ia64 (unofficial port)	36.3.8i.14-Nov-2020-2~0exp0simde	1.074,4 kB	11.899,0 kB	[overzicht]
m68k (unofficial port)	36.3.8i.14-Nov-2020-2~0exp0simde	755,5 kB	5.887,0 kB	[overzicht]
mips64el	36.3.8i.14-Nov-2020-2~0exp0simde	809,2 kB	6.742,0 kB	[overzicht]
ppc64 (unofficial port)	36.3.8i.14-Nov-2020-2~0exp0simde	872,5 kB	7.875,0 kB	[overzicht]
ppc64el	36.3.8i.14-Nov-2020-2~0exp0simde	884,6 kB	8.238,0 kB	[overzicht]
riscv64	36.3.8i.14-Nov-2020-2~0exp0simde+b1	1.005,3 kB	5.915,0 kB	[overzicht]
s390x	36.3.8i.14-Nov-2020-2~0exp0simde	826,3 kB	6.836,0 kB	[overzicht]
sh4 (unofficial port)	36.3.8i.14-Nov-2020-2~0exp0simde	929,0 kB	6.336,0 kB	[overzicht]
sparc64 (unofficial port)	36.3.8i.14-Nov-2020-2~0exp0simde	895,6 kB	18.263,0 kB	[overzicht]
x32 (unofficial port)	36.3.8i.14-Nov-2020-2~0exp0simde	884,5 kB	6.748,0 kB	[overzicht]